Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1d8ca_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Malate synthase G Malate synthase G Malate synthase G (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMalate synthase G 8044290 3000549 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMalate_synthasee1d8cA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Malate_synthaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.360 Alpha Beta Alpha-Beta Barrel TIM Barrel Malate synthase, domain 3CATH (4.3.0)
A2.170.170.11 Mainly Beta Beta Complex Malate synthase G - maily-beta sub-domain Malate synthase G - maily-beta sub-domainCATH (4.3.0)
A1.20.1220.12 Mainly Alpha Up-down Bundle Malate Synthase G Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01274Malate synthase, TIM barrel domain (MS_TIM-barrel)Malate synthase, TIM barrel domainMalate synthase (MS) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. There have been i ...Domain
PF20658Malate synthase G, alpha-beta insertion domain (MSG_insertion)Malate synthase G, alpha-beta insertion domainMalate synthase (MS) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. There have been i ...Domain
PF20659Malate synthase, C-terminal (MS_C)Malate synthase, C-terminalMalate synthase (MS) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. There have been i ...Domain
PF20656Malate synthase, N-terminal domain (MS_N)Malate synthase, N-terminal domainMalate synthase (MS) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. There have been i ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
malate synthase  M-CSA #53

The discovery of malate synthase proved to be the missing link in closing the tricarboxylic acid cycle, also known as the glyoxylate cycle. Together with isocitrate lyase, malate synthase allows the utilisation of two carbon compounds that would otherwise be wasted. Firstly isocitrate lyase catalyses the cleavage of isocitrate to succinate and glyoxylate (the citric acid cycle would otherwise convert isocitrate to succinate and two molecules of carbon dioxide). Malate synthase then catalyses the Claisen condensation of glyoxylate with an acetyl group from acetyl-CoA to form a malyl-CoA intermediate. This is subsequently hydrolysed, producing malate to replenish the pool of citric-acid-cycle intermediates.

Defined by 6 residues: ASP:A-270GLU:A-272ARG:A-338GLU:A-427ASP:A-455ASP:A-631
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