3GM8 | pdb_00003gm8

Crystal structure of a beta-glycosidase from Bacteroides vulgatus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyE-set domains of sugar-utilizing enzymes 8045422 4007565 SCOP2 (2022-06-29)
ASCOP2 FamilyE-set domains of sugar-utilizing enzymes 8090584 4007565 SCOP2 (2022-06-29)
ASCOP2 Familybeta-Galactosidase N-terminal domain-like 8090586 4002476 SCOP2 (2022-06-29)
ASCOP2 Familybeta-Galactosidase/glucuronidase domain 8090588 4007531 SCOP2 (2022-06-29)
ASCOP2 Familybeta-glycanases 8090590 4003164 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyE set domains 8090583 3000070 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyE set domains 8090585 3000070 SCOP2 (2022-06-29)
ASCOP2 Superfamilygalactose-binding domain-like 8090587 3000087 SCOP2 (2022-06-29)
ASCOP2 Superfamilybeta-Galactosidase/glucuronidase domain-like 8090589 3002047 SCOP2 (2022-06-29)
ASCOP2 Superfamily(Trans)glycosidases 8090591 3000313 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGlyco_hydro_2_Ne3gm8A2 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: Glyco_hydro_2_NECOD (1.6)
AGlyco_hydro_2e3gm8A3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_hydro_2ECOD (1.6)
AInvasin_D3_2e3gm8A5 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Invasin_D3_2ECOD (1.6)
ADUF4982e3gm8A6 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: DUF4982ECOD (1.6)
AGlyco_hydro_2_Ce3gm8A1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Glyco_hydro_2_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)