4V42

Crystal structure of the ribosome at 5.5 A resolution.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth AE]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8044010 3001397 SCOP2B (2022-06-29)
G [auth AF]SCOP2B SuperfamilyRibosomal protein S3 C-terminal domain 8044012 3001053 SCOP2B (2022-06-29)
G [auth AF]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II) 8044011 3001043 SCOP2B (2022-06-29)
H [auth AG]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8044014 3001473 SCOP2B (2022-06-29)
I [auth AH]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8044015 3000100 SCOP2B (2022-06-29)
I [auth AH]SCOP2B SuperfamilydsRNA-binding domain-like 8044017 3000985 SCOP2B (2022-06-29)
K [auth AJ]SCOP2B SuperfamilyRibosomal protein S7 8033523 3000799 SCOP2B (2022-06-29)
M [auth AL]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8037678 3000100 SCOP2B (2022-06-29)
N [auth AM]SCOP2B SuperfamilyRibosomal protein S10 8044019 3001336 SCOP2B (2022-06-29)
O [auth AN]SCOP2B SuperfamilyTranslational machinery components 8044020 3000571 SCOP2B (2022-06-29)
P [auth AO]SCOP2B SuperfamilyNucleic acid-binding proteins 8044021 3000135 SCOP2B (2022-06-29)
Q [auth AP]SCOP2B SuperfamilyS13-like H2TH domain 8003708 3000053 SCOP2B (2022-06-29)
R [auth AQ]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052585 3000068 SCOP2B (2022-06-29)
T [auth AS]SCOP2B SuperfamilyRibosomal protein S16 8044025 3000680 SCOP2B (2022-06-29)
U [auth AT]SCOP2B SuperfamilyNucleic acid-binding proteins 8044026 3000135 SCOP2B (2022-06-29)
V [auth AU]SCOP2B SuperfamilyRibosomal protein S18 8044028 3001191 SCOP2B (2022-06-29)
W [auth AV]SCOP2B SuperfamilyRibosomal protein S19 8044027 3000686 SCOP2B (2022-06-29)
X [auth AW]SCOP2B SuperfamilyRibosomal protein S20 8044029 3001362 SCOP2B (2022-06-29)
CA [auth BD]SCOP2B SuperfamilyNucleic acid-binding proteins 8041953 3000135 SCOP2B (2022-06-29)
CA [auth BD]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8041672 3000334 SCOP2B (2022-06-29)
GA [auth BH]SCOP2B SuperfamilyRibosomal protein L6 8036508 3000724 SCOP2B (2022-06-29)
GA [auth BH]SCOP2B SuperfamilyRibosomal protein L6 8036504 3000724 SCOP2B (2022-06-29)
HA [auth BI]SCOP2B SuperfamilyRibosomal protein L7/12, oligomerisation (N-terminal) domain 8033488 3001092 SCOP2B (2022-06-29)
HA [auth BI]SCOP2B SuperfamilyClpS-like 8035078 3000936 SCOP2B (2022-06-29)
IA [auth BJ]SCOP2B SuperfamilyClpS-like 8035078 3000936 SCOP2B (2022-06-29)
IA [auth BJ]SCOP2B SuperfamilyRibosomal protein L7/12, oligomerisation (N-terminal) domain 8033488 3001092 SCOP2B (2022-06-29)
JA [auth BK]SCOP2B SuperfamilyL9 N-domain-like 8042225 3000338 SCOP2B (2022-06-29)
JA [auth BK]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8035874 3000329 SCOP2B (2022-06-29)
KA [auth BL]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8036651 3001186 SCOP2B (2022-06-29)
KA [auth BL]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8035082 3000950 SCOP2B (2022-06-29)
LA [auth BM]SCOP2B SuperfamilyRibosomal protein L13 8032632 3001134 SCOP2B (2022-06-29)
MA [auth BN]SCOP2B Superfamily50S Ribosomal protein L14-like 8041752 3000433 SCOP2B (2022-06-29)
OA [auth BP]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8082463 3000884 SCOP2B (2022-06-29)
QA [auth BR]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8032651 3000068 SCOP2B (2022-06-29)
RA [auth BS]SCOP2B SuperfamilyRibosomal protein L22 8033220 3001078 SCOP2B (2022-06-29)
SA [auth BT]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8032646 3000210 SCOP2B (2022-06-29)
TA [auth BU]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8032648 3000334 SCOP2B (2022-06-29)
VA [auth BW]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8032653 3000713 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth AE]Ribosomal_S2e4v42AE1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
G [auth AF]Ribosomal_S3_Ce4v42AF1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
G [auth AF]KH_2_1e4v42AF2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
H [auth AG]S4e4v42AG1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
I [auth AH]Ribosomal_S5_Ce4v42AH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
I [auth AH]Ribosomal_S5e4v42AH2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
J [auth AI]Ribosomal_S6e4v42AI1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
K [auth AJ]Ribosomal_S7_1e4v42AJ1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
L [auth AK]Ribosomal_S8_Ne4v42AK1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
L [auth AK]Ribosomal_S8_Ce4v42AK2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
M [auth AL]Ribosomal_S9e4v42AL1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
N [auth AM]Ribosomal_S10e4v42AM1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
O [auth AN]Ribosomal_S11e4v42AN1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
P [auth AO]Ribosom_S12_S23e4v42AO1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
Q [auth AP]Ribosomal_S13_1e4v42AP1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
R [auth AQ]Ribosomal_S14e4v42AQ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14ECOD (1.6)
S [auth AR]Ribosomal_S15_1e4v42AR1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
T [auth AS]Ribosomal_S16_1e4v42AS1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
U [auth AT]Ribosomal_S17_1e4v42AT1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
V [auth AU]Ribosomal_S18e4v42AU1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
W [auth AV]Ribosomal_S19e4v42AV1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
X [auth AW]Ribosomal_S20pe4v42AW1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
BA [auth BC]Ribosomal_L1_2nd_1e4v42BC2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
BA [auth BC]Ribosomal_L1_1ste4v42BC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1stECOD (1.6)
CA [auth BD]Ribosomal_L2_1e4v42BD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
CA [auth BD]Ribosomal_L2_C_2e4v42BD1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
DA [auth BE]Ribosomal_L3e4v42BE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
EA [auth BF]Ribosomal_L4e4v42BF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
FA [auth BG]Ribosomal_L5_Ce4v42BG1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
GA [auth BH]Ribosomal_L6e4v42BH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
GA [auth BH]Ribosomal_L6_1e4v42BH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
HA [auth BI]Ribosomal_L12_Ne4v42BI1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_NECOD (1.6)
HA [auth BI]Ribosomal_L12e4v42BI2 A: a+b two layersX: ClpS-likeH: ClpS-related (From Topology)T: ClpS-relatedF: Ribosomal_L12ECOD (1.6)
IA [auth BJ]Ribosomal_L12_Ne4v42BJ1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: Ribosomal_L12_NECOD (1.6)
IA [auth BJ]Ribosomal_L12e4v42BJ2 A: a+b two layersX: ClpS-likeH: ClpS-related (From Topology)T: ClpS-relatedF: Ribosomal_L12ECOD (1.6)
JA [auth BK]Ribosomal_L9_Ne4v42BK2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
JA [auth BK]Ribosomal_L9_Ce4v42BK1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_CECOD (1.6)
KA [auth BL]Ribosomal_L11e4v42BL1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
KA [auth BL]Ribosomal_L11_Ne4v42BL2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
LA [auth BM]Ribosomal_L13e4v42BM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
MA [auth BN]Ribosomal_L14e4v42BN1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
NA [auth BO]Ribosomal_L18e4v42BO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
OA [auth BP]Ribosomal_L16e4v42BP1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
PA [auth BQ]Ribosomal_L5ee4v42BQ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
QA [auth BR]Ribosomal_L24ee4v42BR1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
RA [auth BS]Ribosomal_L22e4v42BS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
SA [auth BT]Ribosomal_L23_1e4v42BT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_1ECOD (1.6)
TA [auth BU]Ribosomal_L26e4v42BU1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
UA [auth BV]Ribosomal_L25pe4v42BV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
VA [auth BW]Ribosomal_L29e4v42BW1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
WA [auth BX]Ribosomal_L30e4v42BX1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth AE]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
G [auth AF]PF07650KH domain (KH_2)KH domain- Domain
G [auth AF]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
H [auth AG]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
H [auth AG]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
I [auth AH]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
I [auth AH]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
J [auth AI]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
L [auth AK]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
M [auth AL]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
N [auth AM]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
O [auth AN]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
P [auth AO]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
Q [auth AP]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
R [auth AQ]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
S [auth AR]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
T [auth AS]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
U [auth AT]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
V [auth AU]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
W [auth AV]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
Y [auth AX]PF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- Family
BA [auth BC]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
CA [auth BD]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
CA [auth BD]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
EA [auth BF]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
FA [auth BG]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
FA [auth BG]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
GA [auth BH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
HA [auth BI],
IA [auth BJ]
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
HA [auth BI],
IA [auth BJ]
PF00542Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12)Ribosomal protein L7/L12 C-terminal domain- Domain
JA [auth BK]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
JA [auth BK]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
KA [auth BL]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
KA [auth BL]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
LA [auth BM]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
MA [auth BN]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
OA [auth BP]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PA [auth BQ]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
RA [auth BS]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
SA [auth BT]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
TA [auth BU]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
TA [auth BU]PF00467KOW motif (KOW)KOW motif- Family
VA [auth BW]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
WA [auth BX]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA]30S 16S RIBOSOMAL RNA---
B [auth AB],
C [auth AC]
TRNA(PHE)---
D [auth AD]TRNA(PHE)---
E [auth A1]A- AND P-SITE MESSENGER RNA CODONS---
F [auth AE]30S RIBOSOMAL PROTEIN S2
G [auth AF]30S RIBOSOMAL PROTEIN S3
H [auth AG]30S RIBOSOMAL PROTEIN S4
I [auth AH]30S RIBOSOMAL PROTEIN S5
J [auth AI]30S RIBOSOMAL PROTEIN S6
K [auth AJ]30S RIBOSOMAL PROTEIN S7
L [auth AK]30S RIBOSOMAL PROTEIN S8
M [auth AL]30S RIBOSOMAL PROTEIN S9
N [auth AM]30S RIBOSOMAL PROTEIN S10
O [auth AN]30S RIBOSOMAL PROTEIN S11
P [auth AO]30S RIBOSOMAL PROTEIN S12
Q [auth AP]30S RIBOSOMAL PROTEIN S13
R [auth AQ]30S RIBOSOMAL PROTEIN S14
S [auth AR]30S RIBOSOMAL PROTEIN S15
T [auth AS]30S RIBOSOMAL PROTEIN S16
U [auth AT]30S RIBOSOMAL PROTEIN S17
V [auth AU]30S RIBOSOMAL PROTEIN S18
W [auth AV]30S RIBOSOMAL PROTEIN S19
X [auth AW]30S RIBOSOMAL PROTEIN S20
Y [auth AX]30S RIBOSOMAL PROTEIN THX -
Z [auth BA]50S 23S RIBOSOMAL RNA---
AA [auth BB]50S 5S RIBOSOMAL RNA---
BA [auth BC]50S RIBOSOMAL PROTEIN L1
CA [auth BD]50S RIBOSOMAL PROTEIN L2
DA [auth BE]50S RIBOSOMAL PROTEIN L3
EA [auth BF]50S RIBOSOMAL PROTEIN L4
FA [auth BG]50S RIBOSOMAL PROTEIN L5
GA [auth BH]50S RIBOSOMAL PROTEIN L6
HA [auth BI],
IA [auth BJ]
50S RIBOSOMAL PROTEIN L7/L12
JA [auth BK]50S RIBOSOMAL PROTEIN L9
KA [auth BL]50S RIBOSOMAL PROTEIN L11
LA [auth BM]50S RIBOSOMAL PROTEIN L13
MA [auth BN]50S RIBOSOMAL PROTEIN L14
NA [auth BO]50S RIBOSOMAL PROTEIN L15
OA [auth BP]50S RIBOSOMAL PROTEIN L16
PA [auth BQ]50S RIBOSOMAL PROTEIN L18
QA [auth BR]50S RIBOSOMAL PROTEIN L19
RA [auth BS]50S RIBOSOMAL PROTEIN L22
SA [auth BT]50S RIBOSOMAL PROTEIN L23
TA [auth BU]50S RIBOSOMAL PROTEIN L24
UA [auth BV]50S RIBOSOMAL PROTEIN L25---
VA [auth BW]50S RIBOSOMAL PROTEIN L29
WA [auth BX]50S RIBOSOMAL PROTEIN L30

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth AE]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
F [auth AE]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
F [auth AE]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
F [auth AE]IPR001865Small ribosomal subunit protein uS2Family
G [auth AF]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
G [auth AF]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
G [auth AF]IPR004087K Homology domainDomain
G [auth AF]IPR004044K Homology domain, type 2Domain
G [auth AF]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
G [auth AF]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
G [auth AF]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
G [auth AF]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
H [auth AG]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
H [auth AG]IPR002942RNA-binding S4 domainDomain
H [auth AG]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
H [auth AG]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
H [auth AG]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
H [auth AG]IPR022801Small ribosomal subunit protein uS4Family
I [auth AH]IPR000851Small ribosomal subunit protein uS5Family
I [auth AH]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
I [auth AH]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
I [auth AH]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth AH]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
I [auth AH]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
I [auth AH]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
J [auth AI]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
J [auth AI]IPR000529Small ribosomal subunit protein bS6Family
J [auth AI]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
J [auth AI]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
J [auth AI]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
K [auth AJ]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
K [auth AJ]IPR000235Small ribosomal subunit protein uS7Family
K [auth AJ]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
K [auth AJ]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
K [auth AJ]IPR023798Small ribosomal subunit protein uS7 domainDomain
L [auth AK]IPR000630Small ribosomal subunit protein uS8Family
L [auth AK]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
L [auth AK]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
M [auth AL]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
M [auth AL]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
M [auth AL]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
M [auth AL]IPR000754Small ribosomal subunit protein uS9Family
M [auth AL]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
N [auth AM]IPR001848Small ribosomal subunit protein uS10Family
N [auth AM]IPR027486Small ribosomal subunit protein uS10 domainDomain
N [auth AM]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
N [auth AM]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
O [auth AN]IPR001971Small ribosomal subunit protein uS11Family
O [auth AN]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
O [auth AN]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
O [auth AN]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
P [auth AO]IPR006032Small ribosomal subunit protein uS12Family
P [auth AO]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth AO]IPR005679Ribosomal protein uS12, bacterial-typeFamily
Q [auth AP]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
Q [auth AP]IPR001892Small ribosomal subunit protein uS13Family
Q [auth AP]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
Q [auth AP]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
Q [auth AP]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
R [auth AQ]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
R [auth AQ]IPR001209Small ribosomal subunit protein uS14Family
R [auth AQ]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
R [auth AQ]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
S [auth AR]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
S [auth AR]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
S [auth AR]IPR000589Small ribosomal subunit protein uS15Family
T [auth AS]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
T [auth AS]IPR000307Small ribosomal subunit protein bS16Family
U [auth AT]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
U [auth AT]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
U [auth AT]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
U [auth AT]IPR000266Small ribosomal subunit protein uS17Family
V [auth AU]IPR001648Small ribosomal subunit protein bS18Family
V [auth AU]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
V [auth AU]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
W [auth AV]IPR002222Small ribosomal subunit protein uS19Family
W [auth AV]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
W [auth AV]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
W [auth AV]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
X [auth AW]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
X [auth AW]IPR002583Small ribosomal subunit protein bS20Family
Y [auth AX]IPR030826Small ribosomal subunit protein bTHX/bTHXc/bTHXmFamily
Y [auth AX]IPR031414Small ribosomal subunit protein bTHXFamily
BA [auth BC]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
BA [auth BC]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
BA [auth BC]IPR005878Large ribosomal subunit protein uL1, bacterial-typeFamily
BA [auth BC]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
BA [auth BC]IPR002143Large ribosomal subunit protein uL1Family
BA [auth BC]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
CA [auth BD]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
CA [auth BD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth BD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth BD]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
CA [auth BD]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
CA [auth BD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth BD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
CA [auth BD]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
CA [auth BD]IPR002171Large ribosomal subunit protein uL2Family
CA [auth BD]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
CA [auth BD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth BD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth BD]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
CA [auth BD]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
CA [auth BD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth BD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
CA [auth BD]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
CA [auth BD]IPR002171Large ribosomal subunit protein uL2Family
DA [auth BE]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
DA [auth BE]IPR019928Large ribosomal subunit protein uL3, archaealFamily
DA [auth BE]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth BE]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
DA [auth BE]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
DA [auth BE]IPR000597Large ribosomal subunit protein uL3Family
EA [auth BF]IPR019970Large ribosomal subunit protein uL4, archaeaFamily
EA [auth BF]IPR002136Large ribosomal subunit protein uL4Family
EA [auth BF]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
EA [auth BF]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
EA [auth BF]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
FA [auth BG]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
FA [auth BG]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
FA [auth BG]IPR022804Large ribosomal subunit protein uL5, archaealFamily
FA [auth BG]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
FA [auth BG]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
FA [auth BG]IPR002132Large ribosomal subunit protein uL5Family
GA [auth BH]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
GA [auth BH]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
GA [auth BH]IPR000702Large ribosomal subunit protein uL6-likeFamily
GA [auth BH]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
GA [auth BH]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
HA [auth BI],
IA [auth BJ]
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
HA [auth BI],
IA [auth BJ]
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
HA [auth BI],
IA [auth BJ]
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
HA [auth BI],
IA [auth BJ]
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
HA [auth BI],
IA [auth BJ]
IPR000206Large ribosomal subunit protein bL12Family
JA [auth BK]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
JA [auth BK]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
JA [auth BK]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
JA [auth BK]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
JA [auth BK]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
JA [auth BK]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
JA [auth BK]IPR000244Large ribosomal subunit protein bL9Family
KA [auth BL]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
KA [auth BL]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
KA [auth BL]IPR000911Ribosomal protein uL11Family
KA [auth BL]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
KA [auth BL]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
KA [auth BL]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
KA [auth BL]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
LA [auth BM]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
LA [auth BM]IPR005822Large ribosomal subunit protein uL13Family
LA [auth BM]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
LA [auth BM]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
MA [auth BN]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
MA [auth BN]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
MA [auth BN]IPR000218Large ribosomal subunit protein uL14Family
MA [auth BN]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
NA [auth BO]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
NA [auth BO]IPR021131Large ribosomal subunit protein uL15/eL18Domain
NA [auth BO]IPR030878Large ribosomal subunit protein uL15Family
NA [auth BO]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
NA [auth BO]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
OA [auth BP]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
OA [auth BP]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
OA [auth BP]IPR016180Large ribosomal subunit protein uL16 domainDomain
OA [auth BP]IPR047873Large ribosomal subunit protein uL16Family
PA [auth BQ]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
QA [auth BR]IPR023438Ribosomal_eL24Unknown
QA [auth BR]IPR011017TRASH domainDomain
QA [auth BR]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
QA [auth BR]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
QA [auth BR]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
RA [auth BS]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
RA [auth BS]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
RA [auth BS]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
RA [auth BS]IPR001063Large ribosomal subunit protein uL22Family
RA [auth BS]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
SA [auth BT]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
SA [auth BT]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
SA [auth BT]IPR019985Large ribosomal subunit protein uL23Family
SA [auth BT]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
SA [auth BT]IPR013025Large ribosomal subunit protein uL23-likeFamily
TA [auth BU]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
TA [auth BU]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
TA [auth BU]IPR005824KOWDomain
TA [auth BU]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
TA [auth BU]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
TA [auth BU]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
VA [auth BW]IPR050063Universal ribosomal protein uL29Family
VA [auth BW]IPR001854Large ribosomal subunit protein uL29Family
VA [auth BW]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
VA [auth BW]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
WA [auth BX]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
WA [auth BX]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
WA [auth BX]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
WA [auth BX]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site