6B23 | pdb_00006b23

Capsid protein and C-terminal part of CpmB protein in the Staphylococcus aureus pathogenicity island 1 80alpha-derived procapsid

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhage_capside6b23A1 A: a+b three layersX: Thioredoxin-likeH: Major capsid protein gp5 (From Topology)T: Major capsid protein gp5F: Phage_capsidECOD (1.6)
D [auth B]Phage_capside6b23B1 A: a+b three layersX: Thioredoxin-likeH: Major capsid protein gp5 (From Topology)T: Major capsid protein gp5F: Phage_capsidECOD (1.6)
E [auth C]Phage_capside6b23C1 A: a+b three layersX: Thioredoxin-likeH: Major capsid protein gp5 (From Topology)T: Major capsid protein gp5F: Phage_capsidECOD (1.6)
G [auth D]Phage_capside6b23D1 A: a+b three layersX: Thioredoxin-likeH: Major capsid protein gp5 (From Topology)T: Major capsid protein gp5F: Phage_capsidECOD (1.6)
F [auth c]UNK_F_TYPEe6b23c1 A: alpha duplicates or obligate multimersX: Pathogenicity island 1 protein gp6 (From Topology)H: Pathogenicity island 1 protein gp6 (From Topology)T: Pathogenicity island 1 protein gp6F: UNK_F_TYPEECOD (1.6)
H [auth d]UNK_F_TYPEe6b23d1 A: alpha duplicates or obligate multimersX: Pathogenicity island 1 protein gp6 (From Topology)H: Pathogenicity island 1 protein gp6 (From Topology)T: Pathogenicity island 1 protein gp6F: UNK_F_TYPEECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
D [auth B],
E [auth C],
G [auth D]		PF05065Phage capsid family (Phage_capsid)Phage capsid family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth B],
E [auth C],
G [auth D]		Major head protein- -
B [auth a],
C [auth b],
F [auth c],
H [auth d]		Capsid morphogenesis B protein- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
D [auth B],
E [auth C],
G [auth D]		IPR054612Phage capsid-like, C-terminalDomain
A,
D [auth B],
E [auth C],
G [auth D]		IPR024455Phage capsidFamily
B [auth a],
C [auth b],
F [auth c],
H [auth d]		IPR031999Pathogenicity island protein gp6, StaphylococcusFamily
B [auth a],
C [auth b],
F [auth c],
H [auth d]		IPR038540Pathogenicity island protein gp6 superfamilyHomologous Superfamily