6I9A
Porphyromonas gingivalis gingipain K (Kgp) in complex with inhibitor KYT-36
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_C25_C | e6i9aA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Peptidase_C25_C | ECOD (1.6) |
A | Peptidase_C25_cat | e6i9aA4 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: Peptidase_C25_cat | ECOD (1.6) |
A | Peptidase_C25_N | e6i9aA1 | A: a/b three-layered sandwiches | X: Gingipain R extra N-terminal alpha/beta domain (From Topology) | H: Gingipain R extra N-terminal alpha/beta domain (From Topology) | T: Gingipain R extra N-terminal alpha/beta domain | F: Peptidase_C25_N | ECOD (1.6) |
B | Peptidase_C25_C | e6i9aB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Peptidase_C25_C | ECOD (1.6) |
B | Peptidase_C25_cat | e6i9aB2 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: Peptidase_C25_cat | ECOD (1.6) |
B | Peptidase_C25_N | e6i9aB3 | A: a/b three-layered sandwiches | X: Gingipain R extra N-terminal alpha/beta domain (From Topology) | H: Gingipain R extra N-terminal alpha/beta domain (From Topology) | T: Gingipain R extra N-terminal alpha/beta domain | F: Peptidase_C25_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03785 | Peptidase family C25, C terminal ig-like domain (Peptidase_C25_C) | Peptidase family C25, C terminal ig-like domain | - | Domain | |
PF01364 | Peptidase family C25 (Peptidase_C25) | Peptidase family C25 | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029030 | Caspase-like domain superfamily | Homologous Superfamily | |
IPR039392 | Gingipain, N-terminal | Domain | |
IPR005536 | Peptidase C25, Ig-like domain | Domain | |
IPR012600 | Gingipain propeptide | Domain | |
IPR038490 | Gingipain propeptide superfamily | Homologous Superfamily | |
IPR018832 | Peptidase C25, gingipain, C-terminal | Domain | |
IPR001769 | Gingipain | Domain | |
IPR029031 | Gingipain, N-terminal superfamily | Homologous Superfamily | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR011628 | Cleaved adhesin | Domain |