7S81
Structure of human PARP1 domains (Zn1, Zn3, WGR, HD) bound to a DNA double strand break.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | WGR domain-like | 8039231 | 3000760 | SCOP2B (2022-06-29) |
D [auth K] | SCOP2B Superfamily | WGR domain-like | 8039231 | 3000760 | SCOP2B (2022-06-29) |
K [auth P] | SCOP2B Superfamily | WGR domain-like | 8039231 | 3000760 | SCOP2B (2022-06-29) |
L [auth H] | SCOP2B Superfamily | WGR domain-like | 8039231 | 3000760 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PARP_reg | e7s81C2 | A: alpha bundles | X: Domain of poly(ADP-ribose) polymerase (From Topology) | H: Domain of poly(ADP-ribose) polymerase (From Topology) | T: Domain of poly(ADP-ribose) polymerase | F: PARP_reg | ECOD (1.6) |
C | WGR | e7s81C1 | A: a+b two layers | X: WGR domain (From Topology) | H: WGR domain (From Topology) | T: WGR domain | F: WGR | ECOD (1.6) |
D [auth K] | PARP_reg | e7s81K2 | A: alpha bundles | X: Domain of poly(ADP-ribose) polymerase (From Topology) | H: Domain of poly(ADP-ribose) polymerase (From Topology) | T: Domain of poly(ADP-ribose) polymerase | F: PARP_reg | ECOD (1.6) |
D [auth K] | WGR | e7s81K1 | A: a+b two layers | X: WGR domain (From Topology) | H: WGR domain (From Topology) | T: WGR domain | F: WGR | ECOD (1.6) |
K [auth P] | PARP_reg | e7s81P2 | A: alpha bundles | X: Domain of poly(ADP-ribose) polymerase (From Topology) | H: Domain of poly(ADP-ribose) polymerase (From Topology) | T: Domain of poly(ADP-ribose) polymerase | F: PARP_reg | ECOD (1.6) |
K [auth P] | WGR | e7s81P1 | A: a+b two layers | X: WGR domain (From Topology) | H: WGR domain (From Topology) | T: WGR domain | F: WGR | ECOD (1.6) |
L [auth H] | PARP_reg | e7s81H2 | A: alpha bundles | X: Domain of poly(ADP-ribose) polymerase (From Topology) | H: Domain of poly(ADP-ribose) polymerase (From Topology) | T: Domain of poly(ADP-ribose) polymerase | F: PARP_reg | ECOD (1.6) |
L [auth H] | WGR | e7s81H1 | A: a+b two layers | X: WGR domain (From Topology) | H: WGR domain (From Topology) | T: WGR domain | F: WGR | ECOD (1.6) |
G [auth N] | zf-PARP | e7s81N1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PARP-type zinc finger | F: zf-PARP | ECOD (1.6) |
H [auth I] | zf-PARP | e7s81I1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PARP-type zinc finger | F: zf-PARP | ECOD (1.6) |
I [auth A] | zf-PARP | e7s81A1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PARP-type zinc finger | F: zf-PARP | ECOD (1.6) |
O [auth F] | zf-PARP | e7s81F1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PARP-type zinc finger | F: zf-PARP | ECOD (1.6) |
J [auth G] | PLN03123 | e7s81G2 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: PLN03123 | ECOD (1.6) |
J [auth G] | PADR1 | e7s81G1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PADR1 | ECOD (1.6) |
M [auth O] | PLN03123 | e7s81O2 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: PLN03123 | ECOD (1.6) |
M [auth O] | PADR1 | e7s81O1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PADR1 | ECOD (1.6) |
N [auth J] | PLN03123 | e7s81J2 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: PLN03123 | ECOD (1.6) |
N [auth J] | PADR1 | e7s81J1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PADR1 | ECOD (1.6) |
P [auth B] | PLN03123 | e7s81B1 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: PLN03123 | ECOD (1.6) |
P [auth B] | PADR1 | e7s81B2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PADR1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C, D [auth K], K [auth P], L [auth H] | PF05406 | WGR domain (WGR) | WGR domain | This domain is found in a variety of polyA polymerases as well as the E. coli molybdate metabolism regulator Swiss:P33345 and other proteins of unknown function. I have called this domain WGR after the most conserved central motif of the domain. The ... | Domain |
G [auth N], H [auth I], I [auth A], O [auth F] | PF00645 | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region (zf-PARP) | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | Poly(ADP-ribose) polymerase is an important regulatory component of the cellular response to DNA damage. The amino-terminal region of Poly(ADP-ribose) polymerase consists of two PARP-type zinc fingers. This region acts as a DNA nick sensor. | Domain |
J [auth G], M [auth O], N [auth J], P [auth B] | PF21728 | PADR1, N-terminal helical domain (PADR1_N) | PADR1, N-terminal helical domain | This entry represents de N-terminal helical region of PADR1 zinc-binding domain found in poly(ADP-ribose) polymerase-1 (PARP-1) from human and its homologues. The PADR1, known as the third zinc-binding domain (Zn3) localises between the N-terminal PA ... | Domain |
J [auth G], M [auth O], N [auth J], P [auth B] | PF08063 | PADR1 domain, zinc ribbon fold (Zn_ribbon_PADR1) | PADR1 domain, zinc ribbon fold | This is the zinc ribbon fold of the PADR1 domain found in poly(ADP-ribose)-polymerases, referred to as the third zinc-binding domain of these proteins [1-5]. The PADR1 domain is involved in protein-protein interactions that orchestrate PARP-1 activat ... | Domain |