SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 6 mM cytochrome b5 mutant 1H | 10 mM phosphate buffer, 90% H2O, 10% D2O | 10 mM | 7.0 | 1 atm | 303 | |
2 | 2D NOESY | 6 mM cytochrome b5 mutant 1H | 10 mM phosphate buffer, D2O | 10 mM | 7.0 | 1 atm | 303 | |
3 | DQF-COSY | 6 mM cytochrome b5 mutant 1H | 10 mM phosphate buffer, 90% H2O, 10% D2O | 10 mM | 7.0 | 1 atm | 303 | |
4 | DQF-COSY | 6 mM cytochrome b5 mutant 1H | 10 mM phosphate buffer, D2O | 10 mM | 7.0 | 1 atm | 303 | |
5 | TOCSY | 6 mM cytochrome b5 mutant 1H | 10 mM phosphate buffer, 90% H2O, 10% D2O | 10 mM | 7.0 | 1 atm | 303 | |
6 | TOCSY | 6 mM cytochrome b5 mutant 1H | 10 mM phosphate buffer, D2O | 10 mM | 7.0 | 1 atm | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
TORSION ANGLE MOLECULAR | DYNAMICS SIMULATED ANNEALING, RESTRAINED ENERGY MINIMIZATION; PSEUDOCONTACT SHIFTS WERE USED IN THE CALCULATION AND IN THE MINIMIZATION AS FURTHER NON-CLASSICAL CONSTRAINTS | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 35 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 5.0 | Gntert, Mumenthaler, Wthrich |
2 | structure solution | PSEUDODYANA | Banci, Bertini, Cremonini, Gori Savellini, Luchinat, Wthrich, Gntert | |
3 | refinement | Amber | 5.0 | Pearlman, Case, Caldwell, Ross, Cheatham, Ferguson, Seibel, Singh, Weiner, Kollman |
4 | refinement | PSEUDOREM | Banci, Bertini, Gori Savellini, Romagnoli, Turano, Cremonini, Luchinat, Gary |