Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D TOCSY | 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O | NMR | 5.9 | 1 atm | 303 | ||
| 2 | 2D NOESY | 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O | NMR | 5.9 | 1 atm | 303 | ||
| 3 | DQF-COSY | 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O | NMR | 5.9 | 1 atm | 273 | ||
| 4 | 2D NOESY | 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O | NMR | 5.9 | 1 atm | 273 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 500 |
| 2 | Varian | INOVA | 600 |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 40 |
| Conformers Submitted Total Number | 33 |
| Representative Model | 17 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | data analysis | Felix | 2000 | |
| 2 | structure solution | Discover | ||
| 3 | refinement | Discover | ||
| 4 | structure solution | Amber | ||














