GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 4I1O designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4I1O_GDP_G_202Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4I1O_GDP_G_202Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4I1O_GDP_G_202Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4I1O_GDP_G_202 79% 39% 0.129 0.9761.22 1.18 1 4120100%1
4I1O_GDP_E_202 78% 39% 0.132 0.9741.27 1.12 2 360100%1
4I1O_GDP_C_202 77% 40% 0.136 0.9761.22 1.13 1 420100%1
4I1O_GDP_A_202 73% 39% 0.145 0.9741.21 1.16 1 420100%1
8ALK_GDP_B_201 79% 43% 0.118 0.9650.93 1.28 1 400100%1
4HLQ_GDP_D_202 64% 17% 0.164 0.9652.04 1.59 4 600100%1
6SKU_GDP_B_201 62% 45% 0.165 0.9590.97 1.15 1 200100%1
5O74_GDP_B_500 50% 41% 0.186 0.9390.93 1.36 1 400100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1