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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Carreras Puigvert, J."

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Search Summary

This query matches 1,659 Structures.

Refinements

Structure Determination Methodology

experimental (1,659)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (1,565)
	Severe acute respiratory syndrome-related coronavirus (52)
	synthetic construct (40)
	Homo sapiens (17)
	Middle East respiratory syndrome-related coronavirus (17)
	Severe acute respiratory syndrome coronavirus (11)
	Bat SARS CoV Rf1/2004 (2)
	Betacoronavirus England 1 (2)
	Camelus bactrianus (2)
	Murine hepatitis virus strain A59 (2)

More...

Taxonomy

	Riboviria (1,659)
	other sequences (40)
	Eukaryota (22)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (1,635)
	ELECTRON MICROSCOPY (20)
	NEUTRON DIFFRACTION (4)
	SOLUTION NMR (3)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (1,659)
	RNA (16)

Refinement Resolution (Å)

	1.0 - 1.5 (145)
	1.5 - 2.0 (1,005)
	2.0 - 2.5 (410)
	2.5 - 3.0 (84)
	3.0 - 3.5 (12)
	3.5 - 4.0 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (17)
	2015 - 2019 (14)
	2020 - 2024 (1,554)
	2025 - 2029 (71)

Enzyme Classification Name

	Hydrolases (1,659)
	Transferases (56)
	Lyases (10)

Symmetry Type

	Cyclic (1,565)
	Asymmetric (97)

SCOP Classification

	All beta proteins (372)
	Artifacts (22)
	Alpha and beta proteins (a+b) (12)
	Alpha and beta proteins (a/b) (11)
	Small proteins (4)

AllSelected

1 to 25 of 1,659 Structures

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1UK4 \| pdb_00001uk4	Download File View File

Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) Complexed With An Inhibitor

Yang, H., Yang, M., Liu, Y., Bartlam, M., Ding, Y., Lou, Z., Sun, L., Zhou, Z., Ye, S., Anand, K., Pang, H., Gao, G.F., Hilgenfeld, R., Rao, Z.

(2003) Proc Natl Acad Sci U S A 100: 13190-13195

Released	2003-11-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Severe acute respiratory syndrome-related coronavirus synthetic construct
Macromolecule	3C-like proteinase nsp5 (protein) 5-mer peptide of inhibitor (protein)

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2BX3 \| pdb_00002bx3	Download File View File

Crystal Structure of SARS Coronavirus Main Proteinase (P43212)

Verschueren, K.H.G., Mesters, J.R., Hilgenfeld, R.

(2005) J Mol Biology 354: 25

Released	2005-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	SARS coronavirus Sin2774
Macromolecule	3C-like proteinase nsp5 (protein)

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2BX4 \| pdb_00002bx4	Download File View File

Crystal Structure of SARS Coronavirus Main Proteinase (P21212)

Verschueren, K.H.G., Mesters, J.R., Bigalke, J., Hilgenfeld, R.

(2005) J Mol Biology 354: 25

Released	2005-09-26
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	SARS coronavirus Sin2774
Macromolecule	3C-like proteinase nsp5 (protein)

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2M0A \| pdb_00002m0a	Download File View File

Solution structure of MHV nsp3a

Keane, S.C., Giedroc, D.P.

(2013) J Virol 87: 3502-3515

Released	2013-01-23
Method	SOLUTION NMR
Organisms	Murine hepatitis virus strain A59
Macromolecule	Non-structural protein 3 (protein)

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2YNA \| pdb_00002yna	Download File View File

Crystal structure of the main protease of coronavirus HKU4

Ma, Q., Xiao, Y., Hilgenfeld, R.

To be published

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tylonycteris bat coronavirus HKU4
Macromolecule	3C-LIKE PROTEINASE (protein)
Unique Ligands	GOL, IMD, NI

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2YNB \| pdb_00002ynb	Download File View File

Crystal structure of the main protease of coronavirus HKU4 in complex with a Michael acceptor SG85

Ma, Q., Xiao, Y., Hilgenfeld, R.

To be published

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Tylonycteris bat coronavirus HKU4
Macromolecule	3C-LIKE PROTEINASE (protein)
Unique Ligands	G85, NI

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3ATW \| pdb_00003atw	Download File View File

Structure-Based Design, Synthesis, Evaluation of Peptide-mimetic SARS 3CL Protease Inhibitors

Akaji, K., Konno, H., Mitsui, H., Teruya, K., Hattori, Y., Ozaki, T., Kusunoki, M., Sanjho, A.

(2011) J Med Chem 54: 7962-7973

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-Like Proteinase (protein) peptide ACE-THR-VAL-ALC-HIS-H (protein)

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3AVZ \| pdb_00003avz	Download File View File

Structure of SARS 3CL protease with peptidic aldehyde inhibitor containing cyclohexyl side chain

Akaji, K., Konno, H., Mitsui, H., Teruya, K., Hattori, Y., Ozaki, T., Kusunoki, M., Sanjho, A.

(2011) J Med Chem 54: 7962-7973

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-Like Proteinase (protein) peptide ACE-SER-ALA-VAL-ALC-HIS-H (protein)

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3AW0 \| pdb_00003aw0	Download File View File

Structure of SARS 3CL protease with peptidic aldehyde inhibitor

Akaji, K., Konno, H., Mitsui, H., Teruya, K., Hattori, Y., Ozaki, T., Kusunoki, M., Sanjho, A.

(2011) J Med Chem 54: 7962-7973

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-Like Proteinase (protein) peptide ACE-SER-ALA-VAL-LEU-HIS-H (protein)

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3AW1 \| pdb_00003aw1	Download File View File

Structure of SARS 3CL protease auto-proteolysis resistant mutant in the absent of inhibitor

Akaji, K., Konno, H., Mitsui, H., Teruya, K., Hattori, Y., Ozaki, T., Kusunoki, M., Sanjho, A.

(2011) J Med Chem 54: 7962-7973

Released	2011-12-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-Like Proteinase (protein)

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3TIT \| pdb_00003tit	Download File View File

Crystal structure of SARS coronavirus main protease complexed with an alpha, beta-unsaturated ethyl ester SG81

Zhu, L., Hilgenfeld, R.

To be published

Released	2012-08-22
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	SARS coronavirus main protease (protein)
Unique Ligands	G81

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3TIU \| pdb_00003tiu	Download File View File

Crystal structure of SARS coronavirus main protease complexed with an alpha,beta-unsaturated ethyl ester inhibitor SG82

Zhu, L., Hilgenfeld, R.

To be published

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	SARS coronavirus main protease (protein)
Unique Ligands	DMS, G82

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3TNS \| pdb_00003tns	Download File View File

Crystal structure of SARS coronavirus main protease complexed with an alpha, beta-unsaturated ethyl ester inhibitor SG83

Zhu, L., Hilgenfeld, R.

To be published

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	SARS coronavirus main protease (protein)
Unique Ligands	G83

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3TNT \| pdb_00003tnt	Download File View File

Crystal structure of SARS coronavirus main protease complexed with an alpha, beta-unsaturated ethyl ester inhibitor SG85

Zhu, L., Hilgenfeld, R.

To be published

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	SARS coronavirus main protease (protein)
Unique Ligands	G85

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3V3M \| pdb_00003v3m	Download File View File

Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) 3CL Protease in Complex with N-[(1R)-2-(tert-butylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-N-(4-tert-butylphenyl)furan-2-carboxamide inhibitor.

Jacobs, J., Grum-Tokars, V., Zhou, Y., Turlington, M., Saldanha, S.A., Chase, P., Eggler, A., Dawson, E.S., Baez-Santos, Y.M., Tomar, S., Mielech, A.M., Baker, S.C., Lindsley, C.W., Hodder, P., Mesecar, A., Stauffer, S.R.

(2013) J Med Chem 56: 534-546

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	0EN, DMS

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4M0W \| pdb_00004m0w	Download File View File

Crystal Structure of SARS-CoV papain-like protease C112S mutant in complex with ubiquitin

Chou, C.-Y., Chen, H.-Y., Lai, H.-Y., Cheng, S.-C., Chou, Y.-W.

(2014) Acta Crystallogr D Biol Crystallogr 70: 572-581

Released	2014-02-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bos taurus Severe acute respiratory syndrome-related coronavirus
Macromolecule	Replicase polyprotein 1a (protein) Ubiquitin (protein)
Unique Ligands	GOL, NA, NHE, ZN

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4MM3 \| pdb_00004mm3	Download File View File

Crystal structure of SARS-CoV papain-like protease PLpro in complex with ubiquitin aldehyde

Mesecar, A.D., Ratia, K.

(2014) PLoS Pathog 10: e1004113-e1004113

Released	2014-07-02
Method	X-RAY DIFFRACTION 2.752 Å
Organisms	Homo sapiens Severe acute respiratory syndrome-related coronavirus
Macromolecule	Papain-like proteinase (protein) Ubiquitin (protein)
Unique Ligands	ZN

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4OVZ \| pdb_00004ovz	Download File View File

X-Ray Structural and Biological Evaluation of a Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases

Baez-Santos, Y.M., Mesecar, A.

(2014) J Med Chem 57: 2393-2412

Released	2014-04-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	SARS coronavirus Urbani
Macromolecule	Papain-like proteinase (protein)
Unique Ligands	DMS, NA, P85, ZN

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4OW0 \| pdb_00004ow0	Download File View File

X-Ray Structural and Biological Evaluation of a Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases

Baez-Santos, Y.M., Mesecar, A.

(2014) J Med Chem 57: 2393-2412

Released	2014-04-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	SARS coronavirus Urbani
Macromolecule	papain-like protease (protein)
Unique Ligands	DMS, GOL, S88, ZN

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4R3D \| pdb_00004r3d	Download File View File

Crystal structure of MERS Coronavirus papain like protease

Kong, L.Y., Wang, Q., Ming, Z.H., Shaw, N., Sun, Y.N., Yan, L.M., Lou, Z.Y., Rao, Z.H.

To be published

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.818 Å
Organisms	Betacoronavirus England 1
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	ZN

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4TWW \| pdb_00004tww	Download File View File

Structure of SARS-3CL protease complex with a Bromobenzoyl (S,R)-N-decalin type inhibitor

Akaji, K., Teruya, K., Shimamoto, Y., Sanjho, A., Yamashita, E., Nakagawa, A.

(2015) Bioorg Med Chem 23: 876-890

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	3A7

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4TWY \| pdb_00004twy	Download File View File

Structure of SARS-3CL protease complex with a phenylbenzoyl (S,R)-N-decalin type inhibitor

Akaji, K., Teruya, K., Shimamoto, Y., Sanjho, A., Yamashita, E., Nakagawa, A.

(2015) Bioorg Med Chem 23: 876-890

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	3BL

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4WUR \| pdb_00004wur	Download File View File

The crystal structure of the MERS-CoV papain-like protease (C111S) with human ubiquitin

Lei, J., Hilgenfeld, R.

(2016) Virol Sin 31: 288-299

Released	2014-11-26
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Betacoronavirus England 1 Homo sapiens
Macromolecule	Papain-like protease (protein) Polyubiquitin-B (protein)
Unique Ligands	IPA, ZN

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4YPT \| pdb_00004ypt	Download File View File

X-ray structural of three tandemly linked domains of nsp3 from murine hepatitis virus at 2.60 Angstroms resolution

Chen, Y., Savinov, S.N., Mielech, A.M., Cao, T., Baker, S.C., Mesecar, A.D.

(2015) J Biological Chem 290: 25293-25306

Released	2015-08-26
Method	X-RAY DIFFRACTION 2.6009 Å
Organisms	Murine hepatitis virus strain A59
Macromolecule	Replicase polyprotein 1ab (protein)
Unique Ligands	GOL, ZN

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5B6O \| pdb_00005b6o	Download File View File

Crystal structure of MS8104

Wang, H., Kim, Y., Muramatsu, T., Takemoto, C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2016) Proc Natl Acad Sci U S A 113: 12997-13002

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

1 to 25 of 1,659 Structures

Page 1 of 67

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1UK4 | pdb_00001uk4

2BX3 | pdb_00002bx3

2BX4 | pdb_00002bx4

2M0A | pdb_00002m0a

2YNA | pdb_00002yna

2YNB | pdb_00002ynb

3ATW | pdb_00003atw

3AVZ | pdb_00003avz

3AW0 | pdb_00003aw0

3AW1 | pdb_00003aw1

3TIT | pdb_00003tit

3TIU | pdb_00003tiu

3TNS | pdb_00003tns

3TNT | pdb_00003tnt

3V3M | pdb_00003v3m

4M0W | pdb_00004m0w

4MM3 | pdb_00004mm3

4OVZ | pdb_00004ovz

4OW0 | pdb_00004ow0

4R3D | pdb_00004r3d

4TWW | pdb_00004tww

4TWY | pdb_00004twy

4WUR | pdb_00004wur

4YPT | pdb_00004ypt

5B6O | pdb_00005b6o