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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Chao, X."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Homo sapiens (20)
	Thermotoga maritima (2)
	Xenopus tropicalis (2)
	Thermotoga maritima MSB8 (1)

Taxonomy

	Eukaryota (22)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (19)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (25)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (10)
	2.5 - 3.0 (3)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (1)
	2010 - 2014 (13)
	2015 - 2019 (3)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (10)
	Oxidoreductases (4)
	Translocases (6)
	Transferases (3)

Membrane Protein Annotation

	OPM (6)
	PDBTM (6)
	mpstruc (5)

Symmetry Type

	Asymmetric (16)
	Cyclic (10)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	Artifacts (2)
	Small proteins (1)

AllSelected

1 to 25 of 25 Structures

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1XKO \| pdb_00001xko	Download File View File

Structure of Thermotoga maritima CheX

Park, S.Y., Chao, X., Gonzalez-Bonet, G., Beel, B.D., Bilwes, A.M., Crane, B.R.

(2004) Mol Cell 16: 563-574

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Thermotoga maritima
Macromolecule	CHEMOTAXIS protein cheX (protein)

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1XKR \| pdb_00001xkr	Download File View File

X-ray Structure of Thermotoga maritima CheC

Park, S.Y., Chao, X., Gonzalez-Bonet, G., Beel, B.D., Bilwes, A.M., Crane, B.R.

(2004) Mol Cell 16: 563-574

Released	2004-12-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermotoga maritima
Macromolecule	chemotaxis protein CheC (protein)

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2F9Z \| pdb_00002f9z	Download File View File

Complex between the chemotaxis deamidase CheD and the chemotaxis phosphatase CheC from Thermotoga maritima

Chao, X., Park, S.Y., Bilwes, A.M., Crane, B.R.

(2006) Cell 124: 561-571

Released	2006-06-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	PROTEIN (chemotaxis methylation protein) (protein) chemotaxis protein CheC (protein)

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3OW8 \| pdb_00003ow8	Download File View File

Crystal Structure of the WD repeat-containing protein 61

Tempel, W., Li, Z., Chao, X., Lam, R., Wernimont, A.K., He, H., Seitova, A., Pan, P.W., Li, Y., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)

(2011) Protein Cell 2: 202-214

Released	2010-09-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 61 (protein)
Unique Ligands	UNX

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3Q1J \| pdb_00003q1j	Download File View File

Crystal structure of tudor domain 1 of human PHD finger protein 20

Tempel, W., Li, Z., Wernimont, A.K., Chao, X., Bian, C., Lam, R., Crombet, L., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2012) FEBS Lett 586: 859-865

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	PHD finger protein 20 (protein)
Unique Ligands	UNX

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3QII \| pdb_00003qii	Download File View File

Crystal structure of tudor domain 2 of human PHD finger protein 20

Li, Z., Tempel, W., Wernimont, A.K., Chao, X., Bian, C., Lam, R., Crombet, L., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Min, J., Structural Genomics Consortium (SGC)

(2012) FEBS Lett 586: 859-865

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PHD finger protein 20 (protein)
Unique Ligands	UNX

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3S8S \| pdb_00003s8s	Download File View File

Crystal structure of the RRM domain of human SETD1A

Chao, X., Tempel, W., Bian, C., Cerovina, T., Walker, J.R., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

To be published

Released	2011-06-08
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETD1A (protein)
Unique Ligands	UNX

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3S93 \| pdb_00003s93	Download File View File

Crystal structure of conserved motif in TDRD5

Chao, X., Tempel, W., Bian, C., Kania, J., Wernimont, A.K., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

To be published

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	Tudor domain-containing protein 5 (protein)
Unique Ligands	UNX

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3UXG \| pdb_00003uxg	Download File View File

Crystal structure of RFXANK

Tempel, W., Chao, X., Bian, C., Li, Y., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2012) Sci Signal 5: ra39-ra39

Released	2012-06-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	DNA-binding protein RFXANK (protein) Histone deacetylase 4 (protein)
Unique Ligands	UNX

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4HP1 \| pdb_00004hp1	Download File View File

Crystal structure of Tet3 in complex with a non-CpG dsDNA

Chao, X., Tempel, W., Bian, C., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2012) Cell 151: 1200-1213

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Xenopus tropicalis
Macromolecule	LOC100036628 protein (protein) DNA (5'-D(GPCPCPAPCP(5CM)PGPGPTPGPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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4HP3 \| pdb_00004hp3	Download File View File

Crystal structure of Tet3 in complex with a CpG dsDNA

Chao, X., Tempel, W., Bian, C., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2012) Cell 151: 1200-1213

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Xenopus tropicalis
Macromolecule	LOC100036628 protein (protein) DNA (5'-D(GPCPCPAPAPCPGPTPTPGPGPC)-3') (nucleic acid)
Unique Ligands	UNX, ZN

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4II1 \| pdb_00004ii1	Download File View File

Crystal structure of the zinc finger of ZGPAT

Bian, C., Tempel, W., Dong, A., Chao, X., Fu, M., Wernimont, A.K., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

To be published

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Zinc finger CCCH-type with G patch domain-containing protein (protein)
Unique Ligands	UNX, ZN

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4NW3 \| pdb_00004nw3	Download File View File

Crystal structure of MLL CXXC domain in complex with a CpG DNA

Bian, C., Tempel, W., Chao, X., Walker, J.R., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2018) Structure 26: 85-95.e3

Released	2014-04-23
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2A (protein) 5'-D(GPCPCPAPTPCPGPAPTPGPGPC)-3' (nucleic acid)
Unique Ligands	ZN

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4O61 \| pdb_00004o61	Download File View File

Structure of human ALKBH5 crystallized in the presence of citrate

Tempel, W., Chao, X., Liu, K., Dong, A., Cerovina, T., He, H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2014) J Biological Chem 289: 17299-17311

Released	2014-02-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	RNA demethylase ALKBH5 (protein)
Unique Ligands	CIT, GOL, UNL, UNX

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4OCT \| pdb_00004oct	Download File View File

Crystal structure of human ALKBH5 crystallized in the presence of Mn^{2+} and 2-oxoglutarate

Tempel, W., Chao, X., Liu, K., Dong, A., Cerovina, T., He, H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2014) J Biological Chem 289: 17299-17311

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	RNA demethylase ALKBH5 (protein)
Unique Ligands	AKG, MN, UNX

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4PZI \| pdb_00004pzi	Download File View File

Zinc finger region of MLL2 in complex with CpG DNA

Chao, X., Tempel, W., Liu, K., Dong, A., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2018) Structure 26: 85-95.e3

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase 2B (protein) DNA (5'-D(GPCPCPAPCPCPGPGPTPGPGPC)-3') (nucleic acid)
Unique Ligands	UNX, ZN

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5TEE \| pdb_00005tee	Download File View File

Crystal structure of Gemin5 WD40 repeats in apo form

Chao, X., Tempel, W., Bian, C., Cerovina, T., He, H., Walker, J.R., Seitova, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2016) Genes Dev 30: 2376-2390

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)
Unique Ligands	GOL, NA, UNX

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5TEF \| pdb_00005tef	Download File View File

Crystal structure of Gemin5 WD40 repeats in complex with m7GpppG

Chao, X., Tempel, W., Bian, C., He, H., Cerovina, T., Seitova, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2016) Genes Dev 30: 2376-2390

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)
Unique Ligands	GOL, GTG, UNX

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5THA \| pdb_00005tha	Download File View File

Gemin5 WD40 repeats in complex with a guanosyl moiety

Chao, X., Tempel, W., Bian, C., Cerovina, T., He, H., Seitova, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2016) Genes Dev 30: 2376-2390

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)
Unique Ligands	GP3, UNX

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7X07 \| pdb_00007x07	Download File View File

Cryo-EM structure of human ABCD1 in the presence of C26:0

Chao, X., Li-Na, J., Lin, T.

(2023) Signal Transduct Target Ther 8: 74-74

Released	2023-03-22
Method	ELECTRON MICROSCOPY 3.78 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family D member 1 (protein)
Unique Ligands	7PO

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7X0T \| pdb_00007x0t	Download File View File

Cryo-EM structure of human ABCD1 E630Q in the presence of C26:0-CoA and ATP

Chao, X., Li-Na, J., Lin, T.

(2023) Signal Transduct Target Ther 8: 74-74

Released	2023-03-22
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family D member 1 (protein)
Unique Ligands	ATP, CO8

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7X0Z \| pdb_00007x0z	Download File View File

Cryo-EM structure of human ABCD1 E630Q in the presence of ATP and Magnesium in outward-facing state

Chao, X., Li-Na, J., Lin, T.

(2023) Signal Transduct Target Ther 8: 74-74

Released	2023-03-22
Method	ELECTRON MICROSCOPY 2.96 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family D member 1 (protein)
Unique Ligands	ATP, MG

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7X1W \| pdb_00007x1w	Download File View File

Cryo-EM structure of human ABCD1 E630Q in the presence of ATP in inward-facing state

Chao, X., Li-Na, J., Lin, T.

(2023) Signal Transduct Target Ther 8: 74-74

Released	2023-03-22
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family D member 1 (protein)
Unique Ligands	ATP

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7XEC \| pdb_00007xec	Download File View File

Cryo-EM structure of human ABCD1 E630Q in the presence of ATP in inward-facing state 2

Chao, X., Li-Na, J., Lin, T.

(2023) Signal Transduct Target Ther 8: 74-74

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.34 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family D member 1 (protein)
Unique Ligands	ATP

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7YRQ \| pdb_00007yrq	Download File View File

Cryo-EM structure of human Peroxisomal ABC Transporter ABCD1

Chao, X., Li-Na, J., Lin, T.

(2023) Signal Transduct Target Ther 8: 74-74

Released	2023-03-22
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	Homo sapiens
Macromolecule	ATP-binding cassette sub-family D member 1 (protein)
Unique Ligands	K9G

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1XKO | pdb_00001xko

1XKR | pdb_00001xkr

2F9Z | pdb_00002f9z

3OW8 | pdb_00003ow8

3Q1J | pdb_00003q1j

3QII | pdb_00003qii

3S8S | pdb_00003s8s

3S93 | pdb_00003s93

3UXG | pdb_00003uxg

4HP1 | pdb_00004hp1

4HP3 | pdb_00004hp3

4II1 | pdb_00004ii1

4NW3 | pdb_00004nw3

4O61 | pdb_00004o61

4OCT | pdb_00004oct

4PZI | pdb_00004pzi

5TEE | pdb_00005tee

5TEF | pdb_00005tef

5THA | pdb_00005tha

7X07 | pdb_00007x07

7X0T | pdb_00007x0t

7X0Z | pdb_00007x0z

7X1W | pdb_00007x1w

7XEC | pdb_00007xec

7YRQ | pdb_00007yrq