RCSB PDB: Search

2FH7 \| pdb_00002fh7	Download File View File

Crystal structure of the phosphatase domains of human PTP SIGMA

Alvarado, J., Udupi, R., Smith, D., Koss, J., Wasserman, S.R., Ozyurt, S., Atwell, S., Powell, A., Kearins, M.C., Rooney, I., Maletic, M., Bain, K.T., Freeman, J.C., Russell, M., Thompson, D.A., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2007) J Struct Funct Genomics 8: 121-140

Released	2006-01-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase S (protein)

Explore in 3D

2GDQ \| pdb_00002gdq	Download File View File

Crystal structure of mandelate racemase/muconate lactonizing enzyme from Bacillus subtilis at 1.8 A resolution

Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Emtage, S., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Burley, S.K., Sali, A., Babbitt, P., Pieper, U., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-04-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	yitF (protein)

Explore in 3D

2GGE \| pdb_00002gge	Download File View File

Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A

Malashkevich, V.N., Sauder, J.M., Schwinn, K.D., Emtage, S., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Burley, S.K., Sali, A., Babbitt, P., Pieper, U., Gerlt, J.A., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Bacillus subtilis
Macromolecule	yitF (protein)
Unique Ligands	CL, MG

Explore in 3D

2HHL \| pdb_00002hhl	Download File View File

Crystal structure of the human small CTD phosphatase 3 isoform 1

Malashkevich, V.N., Toro, R., Ramagopal, U., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2007) J Struct Funct Genomics 8: 121-140

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CTD small phosphatase-like protein (protein)
Unique Ligands	KEG

Explore in 3D

2I1Y \| pdb_00002i1y	Download File View File

Crystal structure of the phosphatase domain of human PTP IA-2

Faber-Barata, J., Patskovsky, Y., Alvarado, J., Smith, D., Koss, J., Wasserman, S.R., Ozyurt, S., Atwell, S., Powell, A., Kearins, M.C., Maletic, M., Rooney, I., Bain, K.T., Freeman, M., Russell, J.C., Thompson, D.A., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2007) J Struct Funct Genomics 8: 121-140

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase (protein)
Unique Ligands	GOL

Explore in 3D

2IEC \| pdb_00002iec	Download File View File

Crystal Structure of uncharacterized conserved archael protein from Methanopyrus kandleri

Bonanno, J.B., Ramagopal, U.A., Dickey, M., Bain, K.T., Powell, A., Ozyurt, S., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-10-03
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Methanopyrus kandleri
Macromolecule	Uncharacterized protein conserved in archaea (protein)
Unique Ligands	MG

Explore in 3D

2IF6 \| pdb_00002if6	Download File View File

Crystal structure of metalloprotein yiiX from Escherichia coli O157:H7, DUF1105

Bonanno, J.B., Gilmore, J., Bain, K.T., Powell, A., Ozyurt, S., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-10-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Hypothetical protein yiiX (protein)
Unique Ligands	UNX

Explore in 3D

2IJQ \| pdb_00002ijq	Download File View File

Crystal structure of protein rrnAC1037 from Haloarcula marismortui, Pfam DUF309

Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Haloarcula marismortui
Macromolecule	Hypothetical protein (protein)

Explore in 3D

2IM9 \| pdb_00002im9	Download File View File

Crystal structure of protein LPG0564 from Legionella pneumophila str. Philadelphia 1, Pfam DUF1460

Bonanno, J.B., Freeman, J., Bain, K.T., Powell, A., Ozyurt, S., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-10-17
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Hypothetical protein (protein)

Explore in 3D

2O16 \| pdb_00002o16	Download File View File

Crystal structure of a putative acetoin utilization protein (AcuB) from Vibrio cholerae

Patskovsky, Y., Bonanno, J.B., Rutter, M., Bain, K.T., Powell, A., Slocombe, A., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vibrio cholerae
Macromolecule	Acetoin utilization protein AcuB, putative (protein)
Unique Ligands	PO4

Explore in 3D

2O34 \| pdb_00002o34	Download File View File

Crystal structure of protein DVU1097 from Desulfovibrio vulgaris Hildenborough, Pfam DUF375

Malashkevich, V.N., Toro, R., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Nitratidesulfovibrio vulgaris
Macromolecule	Hypothetical protein (protein)
Unique Ligands	NA

Explore in 3D

2OKT \| pdb_00002okt	Download File View File

Crystal structure of O-succinylbenzoic acid synthetase from Staphylococcus aureus, ligand-free form

Patskovsky, Y., Toro, R., Malashkevich, V., Sauder, J.M., Ozyurt, S., Smith, D., Dickey, M., Maletic, M., Powell, A., Gheyi, T., Wasserman, S.R., Gerlt, J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2014) Proc Natl Acad Sci U S A 111: 8535-8540

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Staphylococcus aureus subsp. aureus COL
Macromolecule	O-succinylbenzoic acid synthetase (protein)

Explore in 3D

2OOG \| pdb_00002oog	Download File View File

Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus

Patskovsky, Y., Fedorov, E., Toro, R., Sauder, J.M., Smith, D., Freeman, J., Maletic, M., Powell, A., Gheyi, T., Wasserman, S.R., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	Glycerophosphoryl diester phosphodiesterase (protein)
Unique Ligands	GOL, SO4, ZN

Explore in 3D

2Q01 \| pdb_00002q01	Download File View File

Crystal structure of glucuronate isomerase from Caulobacter crescentus

Patskovsky, Y., Bonanno, J., Sridhar, V., Sauder, J.M., Freeman, J., Powell, A., Koss, J., Groshong, C., Gheyi, T., Wasserman, S.R., Raushel, F., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Caulobacter vibrioides CB15
Macromolecule	Uronate isomerase (protein)
Unique Ligands	K

Explore in 3D

3B5M \| pdb_00003b5m	Download File View File

Crystal structure of conserved uncharacterized protein from Rhodopirellula baltica

Patskovsky, Y., Bonanno, J.B., Sridhar, V., Rutter, M., Powell, A., Maletic, M., Rodgers, R., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.21 Å
Organisms	Rhodopirellula baltica SH 1
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	SO4

Explore in 3D

3BT5 \| pdb_00003bt5	Download File View File

Crystal structure of DUF305 fragment from Deinococcus radiodurans

Ramagopal, U.A., Patskovsky, Y., Rutter, M., Toro, R., Bain, K., Meyer, A.J., Powell, A., Gheyi, T., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	Uncharacterized protein DUF305 (protein)
Unique Ligands	CL

Explore in 3D

3E0S \| pdb_00003e0s	Download File View File

Crystal structure of an uncharacterized protein from Chlorobium tepidum

Bonanno, J.B., Dickey, M., Bain, K.T., Powell, A., Ozyurt, S., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-08-26
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Chlorobaculum tepidum
Macromolecule	uncharacterized protein (protein)
Unique Ligands	SO4

Explore in 3D

5S6X \| pdb_00005s6x	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with Z2889976755

Godoy, A.S., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	CIT, WUG

Explore in 3D

5S6Y \| pdb_00005s6y	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with Z56900771

Godoy, A.S., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	CIT, WUJ

Explore in 3D

5S6Z \| pdb_00005s6z	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with PB2255187532

Godoy, A.S., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	CIT, WUM

Explore in 3D

5S70 \| pdb_00005s70	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with EN300-181428

Godoy, A.S., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.327 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	CIT, WUS

Explore in 3D

5S71 \| pdb_00005s71	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with FUZS-5

Godoy, A.S., Bege, M., Bajusz, D., BorbAs, A., Keseru, G.M., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.941 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	CIT, WUV

Explore in 3D

5S72 \| pdb_00005s72	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with BBL029427

Godoy, A.S., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.512 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	CIT, WUY

Explore in 3D

5SA4 \| pdb_00005sa4	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with Z239136710

Godoy, A.S., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.046 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	K3A

Explore in 3D

5SA5 \| pdb_00005sa5	Download File View File

PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NendoU in complex with Z1530301542

Godoy, A.S., Douangamath, A., Nakamura, A.M., Dias, A., Krojer, T., Noske, G.D., Gawiljuk, V.O., Fernandes, R.S., Fairhead, M., Powell, A., Dunnet, L., Aimon, A., Fearon, D., Brandao-Neto, J., Skyner, R., von Delft, F., Oliva, G.

(2023) Nucleic Acids Res

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Uridylate-specific endoribonuclease (protein)
Unique Ligands	CIT, ZQA

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2FH7 | pdb_00002fh7

2GDQ | pdb_00002gdq

2GGE | pdb_00002gge

2HHL | pdb_00002hhl

2I1Y | pdb_00002i1y

2IEC | pdb_00002iec

2IF6 | pdb_00002if6

2IJQ | pdb_00002ijq

2IM9 | pdb_00002im9

2O16 | pdb_00002o16

2O34 | pdb_00002o34

2OKT | pdb_00002okt

2OOG | pdb_00002oog

2Q01 | pdb_00002q01

3B5M | pdb_00003b5m

3BT5 | pdb_00003bt5

3E0S | pdb_00003e0s

5S6X | pdb_00005s6x

5S6Y | pdb_00005s6y

5S6Z | pdb_00005s6z

5S70 | pdb_00005s70

5S71 | pdb_00005s71

5S72 | pdb_00005s72

5SA4 | pdb_00005sa4

5SA5 | pdb_00005sa5