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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gong, W."

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Search Summary

This query matches 160 Structures.

Refinements

Structure Determination Methodology

experimental (160)

Scientific Name of Source Organism

	Homo sapiens (60)
	Nonlabens marinus S1-08 (11)
	Mus musculus (10)
	Escherichia coli (7)
	Thermotoga maritima (7)
	Geobacillus stearothermophilus (6)
	Rattus norvegicus (6)
	Escherichia coli K-12 (4)
	Schizosaccharomyces pombe 972h- (4)
	synthetic construct (4)

More...

Taxonomy

	Eukaryota (90)
	Bacteria (60)
	Archaea (5)
	other sequences (4)
	Riboviria (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (148)
	ELECTRON MICROSCOPY (12)

Polymer Entity Type

	Protein (160)
	DNA (4)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (32)
	1.5 - 2.0 (58)
	2.0 - 2.5 (29)
	2.5 - 3.0 (19)
	3.0 - 3.5 (16)
	3.5 - 4.0 (4)

Release Date

	2000 - 2004 (17)
	2005 - 2009 (23)
	2010 - 2014 (27)
	2015 - 2019 (38)
	2020 - 2024 (55)

Enzyme Classification Name

	Lyases (19)
	Hydrolases (30)
	Oxidoreductases (9)
	Transferases (9)
	Ligases (5)

Membrane Protein Annotation

	PDBTM (25)
	mpstruc (22)
	MemProtMD (17)
	OPM (5)

Symmetry Type

	Asymmetric (89)
	Cyclic (70)
	Dihedral (3)

SCOP Classification

	All alpha proteins (37)
	Alpha and beta proteins (a+b) (17)
	All beta proteins (22)
	Alpha and beta proteins (a/b) (13)
	Artifacts (9)
	Membrane and cell surface proteins and peptides (15)
	Multi-domain proteins (alpha and beta) (3)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 160 Structures

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1GCU \| pdb_00001gcu	Download File View File

CRYSTAL STRUCTURE OF RAT BILIVERDIN REDUCTASE AT 1.4 A

Kikuchi, A., Park, S.Y., Shiro, Y.

(2001) Nat Struct Biol 8: 221-225

Released	2001-02-08
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Rattus norvegicus
Macromolecule	BILIVERDIN REDUCTASE A (protein)

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1GCV \| pdb_00001gcv	Download File View File

DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS

Naoi, Y., Chong, K.T., Yoshimatsu, K., Miyazaki, G., Tame, J.R.H., Park, S.Y., Adachi, S.I., Morimoto, H.

(2001) J Mol Biology 307: 259-270

Released	2000-08-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mustelus griseus
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	HEM

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1GCW \| pdb_00001gcw	Download File View File

CO form hemoglobin from mustelus griseus

Naoi, Y., Chong, K.T., Yoshimatsu, K., Miyazaki, G., Tame, J.R.H., Park, S.Y., Adachi, S.I., Morimoto, H.

(2001) J Mol Biology 307: 259-270

Released	2000-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mustelus griseus
Macromolecule	PROTEIN (HEMOGLOBIN) (protein)
Unique Ligands	CMO, HEM

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1IW0 \| pdb_00001iw0	Download File View File

Crystal structure of a heme oxygenase (HmuO) from Corynebacterium diphtheriae complexed with heme in the ferric state

Hirotsu, S., Unno, M., Chu, G.C., Lee, D.S., Park, S.Y., Shiro, Y., Ikeda-Saito, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 11937-11947

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase (protein)
Unique Ligands	HEM, SO4
Unique branched monosaccharides	FRU, GLC

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1IW1 \| pdb_00001iw1	Download File View File

Crystal structure of a heme oxygenase (HmuO) from Corynebacterium diphtheriae complexed with heme in the ferrous state

Hirotsu, S., Unno, M., Chu, G.C., Lee, D.S., Park, S.Y., Shiro, Y., Ikeda-Saito, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 11937-11947

Released	2003-04-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase (protein)
Unique Ligands	HEM, SO4
Unique branched monosaccharides	FRU, GLC

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1IZO \| pdb_00001izo	Download File View File

Cytochrome P450 BS beta Complexed with Fatty Acid

Lee, D.S., Yamada, A., Sugimoto, H., Matsunaga, I., Ogura, H., Ichihara, K., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 9761-9767

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus subtilis
Macromolecule	Cytochrome P450 152A1 (protein)
Unique Ligands	HEM, PAM

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1JFB \| pdb_00001jfb	Download File View File

X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferric resting state at atomic resolution

Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Acta Crystallogr D Biol Crystallogr 58: 81-89

Released	2001-12-20
Method	X-RAY DIFFRACTION 1 Å
Organisms	Fusarium oxysporum
Macromolecule	nitric-oxide reductase cytochrome P450 55A1 (protein)
Unique Ligands	GOL, HEM

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1JFC \| pdb_00001jfc	Download File View File

X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferrous CO state at atomic resolution

Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Acta Crystallogr D Biol Crystallogr 58: 81-89

Released	2001-12-20
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Fusarium oxysporum
Macromolecule	nitric-oxide reductase Cytochrome P450 55A1 (protein)
Unique Ligands	CMO, GOL, HEM

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1L8L \| pdb_00001l8l	Download File View File

Molecular basis for the local confomational rearrangement of human phosphoserine phosphatase

Kim, H.Y., Heo, Y.S., Kim, J.H., Park, M.H., Moon, J., Park, S.Y., Lee, T.G., Jeon, Y.H., Ro, S., Hwang, K.Y.

(2002) J Biological Chem 277: 46651-46658

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	L-3-phosphoserine phosphatase (protein)
Unique Ligands	APO

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1L8O \| pdb_00001l8o	Download File View File

Molecular basis for the local conformational rearrangement of human phosphoserine phosphatase

Kim, H.Y., Heo, Y.S., Kim, J.H., Park, M.H., Moon, J., Park, S.Y., Lee, T.G., Jeon, Y.H., Ro, S., Hwang, K.Y.

(2002) J Biological Chem 277: 46651-46658

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	L-3-phosphoserine phosphatase (protein)
Unique Ligands	PO4, SER

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1U0S \| pdb_00001u0s	Download File View File

Chemotaxis kinase CheA P2 domain in complex with response regulator CheY from the thermophile thermotoga maritima

Park, S.Y., Beel, B.D., Simon, M.I., Bilwes, A.M., Crane, B.R.

(2004) Proc Natl Acad Sci U S A 101: 11646-11651

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	Chemotaxis protein cheA (protein) Chemotaxis protein cheY (protein)

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1UEK \| pdb_00001uek	Download File View File

Crystal structure of 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase

Wada, T., Kuramitsu, S., Yokoyama, S., Tame, J.R.H., Park, S.Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biological Chem 278: 30022-30027

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus
Macromolecule	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase (protein)

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1V4U \| pdb_00001v4u	Download File View File

Crystal structure of bluefin tuna carbonmonoxy-hemoglobin

Yokoyama, T., Chong, K.T., Miyazaki, Y., Nakatsukasa, T., Unzai, S., Miyazaki, G., Morimoto, H., Jeremy, R.H.T., Park, S.Y.

(2004) J Biological Chem 279: 28632-28640

Released	2004-07-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thunnus thynnus
Macromolecule	hemoglobin alpha chain (protein) hemoglobin beta chain (protein)
Unique Ligands	CMO, HEM

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1V4W \| pdb_00001v4w	Download File View File

Crystal structure of bluefin tuna hemoglobin deoxy form at pH7.5

Yokoyama, T., Chong, K.T., Miyazaki, Y., Nakatsukasa, T., Unzai, S., Miyazaki, G., Morimoto, H., Jeremy, R.H.T., Park, S.Y.

(2004) J Biological Chem 279: 28632-28640

Released	2004-07-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thunnus thynnus
Macromolecule	hemoglobin alpha chain (protein) hemoglobin beta chain (protein)
Unique Ligands	HEM

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1V4X \| pdb_00001v4x	Download File View File

Crystal structure of bluefin tuna hemoglobin deoxy form at pH5.0

Yokoyama, T., Chong, K.T., Miyazaki, Y., Nakatsukasa, T., Unzai, S., Miyazaki, G., Morimoto, H., Jeremy, R.H.T., Park, S.Y.

(2004) J Biological Chem 279: 28632-28640

Released	2004-07-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thunnus thynnus
Macromolecule	hemoglobin alpha chain (protein) hemoglobin beta chain (protein)
Unique Ligands	HEM

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1VAT \| pdb_00001vat	Download File View File

Iodine derivative of hen egg-white lysozyme

Takeda, K., Miyatake, H., Park, S.Y., Kawamoto, M., Kamiya, N., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Appl Crystallogr 37: 925-933

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	IOD

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1VAU \| pdb_00001vau	Download File View File

Xenon derivative of hen egg-white lysozyme

Takeda, K., Miyatake, H., Park, S.Y., Kawamoto, M., Kamiya, N., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Appl Crystallogr 37: 925-933

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, NA, XE

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1XKO \| pdb_00001xko	Download File View File

Structure of Thermotoga maritima CheX

Park, S.Y., Chao, X., Gonzalez-Bonet, G., Beel, B.D., Bilwes, A.M., Crane, B.R.

(2004) Mol Cell 16: 563-574

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Thermotoga maritima
Macromolecule	CHEMOTAXIS protein cheX (protein)

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1XKR \| pdb_00001xkr	Download File View File

X-ray Structure of Thermotoga maritima CheC

Park, S.Y., Chao, X., Gonzalez-Bonet, G., Beel, B.D., Bilwes, A.M., Crane, B.R.

(2004) Mol Cell 16: 563-574

Released	2004-12-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermotoga maritima
Macromolecule	chemotaxis protein CheC (protein)

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2B9L \| pdb_00002b9l	Download File View File

Crystal structure of prophenoloxidase activating factor-II from the beetle Holotrichia diomphalia

Piao, S., Song, Y.-L., Park, S.Y., Lee, B.L., Oh, B.-H., Ha, N.-C.

(2005) EMBO J 24: 4404-4414

Released	2006-01-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Holotrichia diomphalia
Macromolecule	prophenoloxidase activating factor (protein)
Unique Ligands	CA, SO4
Unique branched monosaccharides	FUC, NAG

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2CH4 \| pdb_00002ch4	Download File View File

Complex between Bacterial Chemotaxis histidine kinase CheA domains P4 and P5 and receptor-adaptor protein CheW

Park, S.Y., Bilwes, A.M., Crane, B.R.

(2006) Nat Struct Mol Biol 13: 400

Released	2006-04-18
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Thermotoga maritima
Macromolecule	CHEMOTAXIS PROTEIN CHEA (protein) CHEMOTAXIS PROTEIN CHEW (protein)
Unique Ligands	ANP

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2CH7 \| pdb_00002ch7	Download File View File

Crystal structure of the cytoplasmic domain of a bacterial chemoreceptor from Thermotoga maritima

Park, S.Y., Bilwes, A.M., Crane, B.R.

(2006) Nat Struct Mol Biol 13: 400

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermotoga maritima
Macromolecule	METHYL-ACCEPTING CHEMOTAXIS PROTEIN (protein)
Unique Ligands	PB

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2D5X \| pdb_00002d5x	Download File View File

Crystal structure of carbonmonoxy horse hemoglobin complexed with L35

Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.

(2006) J Mol Biology 356: 790-801

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Equus caballus
Macromolecule	Hemoglobin alpha subunit (protein) Hemoglobin beta subunit (protein)
Unique Ligands	CMO, HEM, L35

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2D5Z \| pdb_00002d5z	Download File View File

Crystal structure of T-state human hemoglobin complexed with three L35 molecules

Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.

(2006) J Mol Biology 356: 790-801

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin alpha subunit (protein) Hemoglobin beta subunit (protein)
Unique Ligands	HEM, L35

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2D60 \| pdb_00002d60	Download File View File

Crystal structure of deoxy human hemoglobin complexed with two L35 molecules

Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.

(2006) J Mol Biology 356: 790-801

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Hemoglobin alpha subunit (protein) Hemoglobin beta subunit (protein)
Unique Ligands	HEM, L35

1 to 25 of 160 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1GCU | pdb_00001gcu

1GCV | pdb_00001gcv

1GCW | pdb_00001gcw

1IW0 | pdb_00001iw0

1IW1 | pdb_00001iw1

1IZO | pdb_00001izo

1JFB | pdb_00001jfb

1JFC | pdb_00001jfc

1L8L | pdb_00001l8l

1L8O | pdb_00001l8o

1U0S | pdb_00001u0s

1UEK | pdb_00001uek

1V4U | pdb_00001v4u

1V4W | pdb_00001v4w

1V4X | pdb_00001v4x

1VAT | pdb_00001vat

1VAU | pdb_00001vau

1XKO | pdb_00001xko

1XKR | pdb_00001xkr

2B9L | pdb_00002b9l

2CH4 | pdb_00002ch4

2CH7 | pdb_00002ch7

2D5X | pdb_00002d5x

2D5Z | pdb_00002d5z

2D60 | pdb_00002d60