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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gysel, K."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Lotus japonicus (6)
	Nitrospira defluvii (5)
	Medicago truncatula (4)
	Lama glama (2)
	Thermus thermophilus HB8 (1)

Taxonomy

	Eukaryota (10)
	Bacteria (6)

Experimental Method

X-RAY DIFFRACTION (16)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (7)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (2)
	2020 - 2024 (9)

Enzyme Classification Name

	Oxidoreductases (5)
	Transferases (4)

Symmetry Type

	Asymmetric (10)
	Cyclic (6)

SCOP Classification

	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 16 of 16 Structures

Page 1 of 1

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4M05 \| pdb_00004m05	Download File View File

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii R173E

Gysel, K., Hagmueller, A., Djinovic-Carugo, K.

(2014) Biochemistry 53: 77-89

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Nitrospira defluvii
Macromolecule	Chlorite dismutase (protein)
Unique Ligands	ACT, EDO, HEM

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4M06 \| pdb_00004m06	Download File View File

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii W145F in Complex with Cyanide

Hagmueller, A., Gysel, K., Djinovic-Carugo, K.

(2014) Biochemistry 53: 77-89

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Nitrospira defluvii
Macromolecule	Chlorite dismutase (protein)
Unique Ligands	CYN, EDO, GOL, HEM

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4M07 \| pdb_00004m07	Download File View File

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii W145F

Hagmueller, A., Gysel, K., Djinovic-Carugo, K.

(2014) Biochemistry 53: 77-89

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Nitrospira defluvii
Macromolecule	Chlorite dismutase (protein)
Unique Ligands	EDO, GOL, HEM

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4M08 \| pdb_00004m08	Download File View File

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii W145V

Gysel, K., Hagmueller, A., Djinovic-Carugo, K.

(2014) Biochemistry 53: 77-89

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.799 Å
Organisms	Nitrospira defluvii
Macromolecule	Chlorite dismutase (protein)
Unique Ligands	EDO, HEM, IMD, SO4

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4M09 \| pdb_00004m09	Download File View File

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii W146Y R173Q

Gysel, K., Hagmueller, A., Djinovic-Carugo, K.

(2014) Biochemistry 53: 77-89

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Nitrospira defluvii
Macromolecule	Chlorite dismutase (protein)
Unique Ligands	EDO, HEM, IMD, SO4

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4XCM \| pdb_00004xcm	Download File View File

Crystal structure of the putative NlpC/P60 D,L endopeptidase from T. thermophilus

Wong, J., Midtgaard, S., Gysel, K., Thygesen, M.B., Sorensen, K.K., Jensen, K.J., Stougaard, J., Thirup, S., Blaise, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 592-605

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Cell wall-binding endopeptidase-related protein (protein)

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5LS2 \| pdb_00005ls2	Download File View File

Receptor mediated chitin perception in legumes is functionally seperable from Nod factor perception

Bozsoki, Z., Cheng, J., Feng, F., Gysel, K., Andersen, K.R., Oldroyd, G., Blaise, M., Radutoiu, S., Stougaard, J.

(2017) Proc Natl Acad Sci U S A 114: E8118-E8127

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lotus japonicus
Macromolecule	LysM type receptor kinase (protein)
Unique Ligands	SO4
Unique branched monosaccharides	NAG

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6QUP \| pdb_00006qup	Download File View File

Structural signatures in EPR3 define a unique class of plant carbohydrate receptors

Wong, J.E., Gysel, K., Birkefeldt, T.G., Vinther, M., Muszynski, A., Azadi, P., Laursen, N.S., Sullivan, J.T., Ronson, C.W., Stougaard, J., Andersen, K.R.

(2020) Nat Commun 11: 3797-3797

Released	2020-08-05
Method	X-RAY DIFFRACTION 1.871 Å
Organisms	Lama glama Lotus japonicus
Macromolecule	LysM type receptor kinase (protein) Nanobody 186 (Nb186) (protein)
Unique Ligands	EDO, IPA, NAG

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6XWE \| pdb_00006xwe	Download File View File

Crystal structure of LYK3 ectodomain

Gysel, K., Blaise, M., Andersen, K.R.

(2020) Science 369: 663-670

Released	2020-08-12
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Medicago truncatula
Macromolecule	LysM domain receptor-like kinase 3 (protein)
Unique Ligands	CCN
Unique branched monosaccharides	BMA, FUC, NAG

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7AU7 \| pdb_00007au7	Download File View File

Crystal structure of Nod Factor Perception ectodomain

Gysel, K., Blaise, M., Andersen, K.R.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.547 Å
Organisms	Medicago truncatula
Macromolecule	Serine/threonine receptor-like kinase NFP (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7BAX \| pdb_00007bax	Download File View File

Crystal structure of LYS11 ectodomain

Laursen, M., Cheng, J., Gysel, K., Blaise, M., Andersen, K.R.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Lotus japonicus
Macromolecule	LysM type receptor kinase (protein)
Unique Ligands	NAG

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8PEH \| pdb_00008peh	Download File View File

Crystal structure of Lotus japonicus SYMRK kinase domain D738N

Noergaard, M.M.M., Gysel, K., Hansen, S.B., Andersen, K.R.

(2024) Proc Natl Acad Sci U S A 121: e2311522121-e2311522121

Released	2024-02-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Lotus japonicus
Macromolecule	Receptor-like kinase SYMRK (protein)
Unique Ligands	EDO, SO4

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8PS7 \| pdb_00008ps7	Download File View File

Crystal structure of Medicago truncatula LYR4 kinase domain

Simonsen, B., Gysel, K., Laursen, M., Andersen, K.R.

(2025) New Phytol

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Medicago truncatula
Macromolecule	LysM-domain receptor-like kinase (protein)
Unique Ligands	ANP, GOL, SO4

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8S79 \| pdb_00008s79	Download File View File

Lotus japonicus NFR5 intracellular domain in complex with Nanobody 200

Hansen, S.B., Gysel, K., Andersen, K.R.

(2024) Proc Natl Acad Sci U S A 121: e2405671121-e2405671121

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Lama glama Lotus japonicus
Macromolecule	Nanobody 200 (protein) Nod-factor receptor 5 (protein)
Unique Ligands	ACT, BME, PEG

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9GB9 \| pdb_00009gb9	Download File View File

Crystal structure of Lotus japonicus CERK6 kinase domain D460N

Simonsen, B.W., Gysel, K., Andersen, K.R.

(2024) bioRxiv

Released	2024-11-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Lotus japonicus
Macromolecule	LysM type receptor kinase (protein)
Unique Ligands	EDO, IMD

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9GFZ \| pdb_00009gfz	Download File View File

Crystal structure of Medicago Truncatula LYK3 kinase domain D459N

Simonsen, B., Gysel, K., Andersen, C.G., Andersen, K.R.

(2024) bioRxiv

Released	2024-11-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Medicago truncatula
Macromolecule	LysM domain receptor-like kinase 3 (protein)
Unique Ligands	ANP

1 to 16 of 16 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4M05 | pdb_00004m05

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii R173E

4M06 | pdb_00004m06

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii W145F in Complex with Cyanide

4M07 | pdb_00004m07

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii W145F

4M08 | pdb_00004m08

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii W145V

4M09 | pdb_00004m09

Crystal Structure of Mutant Chlorite Dismutase from Candidatus Nitrospira defluvii W146Y R173Q

4XCM | pdb_00004xcm

Crystal structure of the putative NlpC/P60 D,L endopeptidase from T. thermophilus

5LS2 | pdb_00005ls2

Receptor mediated chitin perception in legumes is functionally seperable from Nod factor perception

6QUP | pdb_00006qup

Structural signatures in EPR3 define a unique class of plant carbohydrate receptors

6XWE | pdb_00006xwe

Crystal structure of LYK3 ectodomain

7AU7 | pdb_00007au7

Crystal structure of Nod Factor Perception ectodomain

7BAX | pdb_00007bax

Crystal structure of LYS11 ectodomain

8PEH | pdb_00008peh

Crystal structure of Lotus japonicus SYMRK kinase domain D738N

8PS7 | pdb_00008ps7

Crystal structure of Medicago truncatula LYR4 kinase domain

8S79 | pdb_00008s79

Lotus japonicus NFR5 intracellular domain in complex with Nanobody 200

9GB9 | pdb_00009gb9

Crystal structure of Lotus japonicus CERK6 kinase domain D460N

9GFZ | pdb_00009gfz

Crystal structure of Medicago Truncatula LYK3 kinase domain D459N

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4M05 | pdb_00004m05

4M06 | pdb_00004m06

4M07 | pdb_00004m07

4M08 | pdb_00004m08

4M09 | pdb_00004m09

4XCM | pdb_00004xcm

5LS2 | pdb_00005ls2

6QUP | pdb_00006qup

6XWE | pdb_00006xwe

7AU7 | pdb_00007au7

7BAX | pdb_00007bax

8PEH | pdb_00008peh

8PS7 | pdb_00008ps7

8S79 | pdb_00008s79

9GB9 | pdb_00009gb9

9GFZ | pdb_00009gfz