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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kim, S.-H."

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Search Summary

This query matches 122 Structures.

Refinements

Structure Determination Methodology

experimental (122)

Scientific Name of Source Organism

	Homo sapiens (43)
	Salmonella enterica subsp. enterica serovar Typhimurium (12)
	Thermotoga maritima (10)
	Mycoplasmoides pneumoniae (9)
	Methanocaldococcus jannaschii (6)
	Thermus thermophilus HB8 (6)
	Escherichia coli (4)
	Arabidopsis thaliana (3)
	Gallus gallus (3)
	Pyrococcus horikoshii (3)

More...

Taxonomy

	Eukaryota (53)
	Bacteria (52)
	Archaea (13)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (122)

Polymer Entity Type

	Protein (119)
	DNA (2)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (34)
	2.0 - 2.5 (46)
	2.5 - 3.0 (30)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)

Release Date

	1975 - 1979 (1)
	1985 - 1989 (2)
	1990 - 1994 (12)
	1995 - 1999 (21)
	2000 - 2004 (62)
	2005 - 2009 (24)

Enzyme Classification Name

	Hydrolases (43)
	Oxidoreductases (14)
	Transferases (17)
	Translocases (4)
	Ligases (4)
	Lyases (1)

Membrane Protein Annotation

	MemProtMD (3)
	OPM (3)
	PDBTM (3)

Symmetry Type

	Asymmetric (77)
	Cyclic (30)
	Dihedral (19)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (30)
	All alpha proteins (49)
	Alpha and beta proteins (a/b) (34)
	Artifacts (12)
	All beta proteins (13)
	Membrane and cell surface proteins and peptides (3)
	Multi-domain proteins (alpha and beta) (2)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 122 Structures

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1AIN \| pdb_00001ain	Download File View File

CRYSTAL STRUCTURE OF HUMAN ANNEXIN I AT 2.5 ANGSTROMS RESOLUTION

Kim, S.-H.

(1993) Protein Sci 2: 448-458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	ANNEXIN I (protein)
Unique Ligands	CA

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1B0U \| pdb_00001b0u	Download File View File

ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM

Hung, L.-W., Wang, I.X., Nikaido, K., Liu, P.-Q., Ames, G.F.-L., Kim, S.-H.

(1998) Nature 396: 703-707

Released	1999-11-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	HISTIDINE PERMEASE (protein)
Unique Ligands	ATP, CL

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1B8P \| pdb_00001b8p	Download File View File

MALATE DEHYDROGENASE FROM AQUASPIRILLUM ARCTICUM

Kim, S.Y., Hwang, K.Y., Kim, S.-H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)

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1B8U \| pdb_00001b8u	Download File View File

MALATE DEHYDROGENASE FROM AQUASPIRILLUM ARCTICUM

Kim, S.Y., Hwang, K.Y., Kim, S.-H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)
Unique Ligands	NAD, OAA

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1BCC \| pdb_00001bcc	Download File View File

CYTOCHROME BC1 COMPLEX FROM CHICKEN

Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.-I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A., Kim, S.-H.

(1998) Nature 392: 677-684

Released	1998-08-19
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Gallus gallus
Macromolecule	Unique protein chains: 10
Unique Ligands	BOG, FES, HEM, PEE, U10

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1BU2 \| pdb_00001bu2	Download File View File

X-RAY STRUCTURE OF A VIRAL CYCLIN FROM HERPESVIRUS SAIMIRI

Schulze-Gahmen, U., Jung, J.U., Kim, S.-H.

(1999) Structure 7: 245-254

Released	1999-06-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Herpesvirus saimiri (strain 11)
Macromolecule	CYCLIN HOMOLOG (protein)

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1COJ \| pdb_00001coj	Download File View File

FE-SOD FROM AQUIFEX PYROPHILUS, A HYPERTHERMOPHILIC BACTERIUM

Lim, J.H., Yu, Y.G., Kim, S.-H., Cho, S.-J., Ahn, B.Y., Han, Y.S., Cho, Y.

(1997) J Mol Biology 270: 259-274

Released	1999-06-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex pyrophilus
Macromolecule	PROTEIN (SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	FE

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1DM2 \| pdb_00001dm2	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR HYMENIALDISINE

Thunnissen, A.M., Kim, S.-H.

(2000) Chem Biol 7: 51-63

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 2 (protein)
Unique Ligands	EDO, HMD

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1G2I \| pdb_00001g2i	Download File View File

CRYSTAL STRUCTURE OF A NOVEL INTRACELLULAR PROTEASE FROM PYROCOCCUS HORIKOSHII AT 2 A RESOLUTION

Du, X., Choi, I.-G., Kim, R., Jancarik, J., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2000) Proc Natl Acad Sci U S A 97: 14079-14084

Released	2000-11-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	PROTEASE I (protein)
Unique Ligands	SO4

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1G5S \| pdb_00001g5s	Download File View File

CRYSTAL STRUCTURE OF HUMAN CYCLIN DEPENDENT KINASE 2 (CDK2) IN COMPLEX WITH THE INHIBITOR H717

Dreyer, M.K., Borcherding, D.R., Dumont, J.A., Peet, N.P., Tsay, J.T., Wright, P.S., Bitonti, A.J., Shen, J., Kim, S.-H.

(2001) J Med Chem 44: 524-530

Released	2001-11-02
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	I17

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1HCK \| pdb_00001hck	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2

Schulze-Gahmen, U., De Bondt, H.L., Kim, S.-H.

(1996) J Med Chem 39: 4540-4546

Released	1996-12-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	HUMAN CYCLIN-DEPENDENT KINASE 2 (protein)
Unique Ligands	ATP, MG

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1HCL \| pdb_00001hcl	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2

Schulze-Gahmen, U., De Bondt, H.L., Kim, S.-H.

(1996) J Med Chem 39: 4540-4546

Released	1996-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	HUMAN CYCLIN-DEPENDENT KINASE 2 (protein)

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1HMC \| pdb_00001hmc	Download File View File

THREE-DIMENSIONAL STRUCTURE OF DIMERIC HUMAN RECOMBINANT MACROPHAGE COLONY STIMULATING FACTOR

Bohm, A., Pandit, J., Jancarik, J., Halenbeck, R., Koths, K., Kim, S.-H.

(1992) Science 258: 1358-1362

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	HUMAN MACROPHAGE COLONY STIMULATING FACTOR (protein)

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1ILW \| pdb_00001ilw	Download File View File

Crystal Structure of Pyrazinamidase/Nicotinamidase of Pyrococcus horikoshii

Du, X., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2001) Biochemistry 40: 14166-14172

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pyrococcus horikoshii
Macromolecule	180 aa long hypothetical Pyrazinamidase/nicotinamidase (protein)

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1IM5 \| pdb_00001im5	Download File View File

Crystal Structure of Pyrazinamidase of Pyrococcus horikoshii in Complex with Zinc

Du, X., Kim, S.-H.

(2001) Biochemistry 40: 14166-14172

Released	2001-12-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pyrococcus horikoshii
Macromolecule	180aa long hypothetical Pyrazinamidase/Nicotinamidase (protein)
Unique Ligands	ZN

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1J97 \| pdb_00001j97	Download File View File

Phospho-Aspartyl Intermediate Analogue of Phosphoserine phosphatase

Cho, H., Wang, W., Kim, R., Yokota, H., Damo, S., Kim, S.-H., Wemmer, D., Kustu, S., Yan, D., Berkeley Structural Genomics Center (BSGC)

(2001) Proc Natl Acad Sci U S A 98: 8525-8530

Released	2001-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Phosphoserine Phosphatase (protein)
Unique Ligands	MG, PO4

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1JX7 \| pdb_00001jx7	Download File View File

Crystal structure of ychN protein from E.coli

Shin, D.H., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2002) J Struct Funct Genomics 2: 53-66

Released	2002-09-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL PROTEIN YCHN (protein)

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1KXU \| pdb_00001kxu	Download File View File

CYCLIN H, A POSITIVE REGULATORY SUBUNIT OF CDK ACTIVATING KINASE

Kim, K.K., Chamberin, H.M., Morgan, D.O., Kim, S.-H.

(1996) Nat Struct Biol 3: 849-855

Released	1997-01-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN H (protein)

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1LAF \| pdb_00001laf	Download File View File

STRUCTURAL BASES FOR MULTIPLE LIGAND SPECIFICITY OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN

Kim, S.-H., Oh, B.-H.

(1994) J Biological Chem 269: 26323-26330

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN (protein)
Unique Ligands	ARG

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1LAG \| pdb_00001lag	Download File View File

STRUCTURAL BASES FOR MULTIPLE LIGAND SPECIFICITY OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN

Kim, S.-H., Oh, B.-H.

(1994) J Biological Chem 269: 26323-26330

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN (protein)
Unique Ligands	HIS

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1LAH \| pdb_00001lah	Download File View File

STRUCTURAL BASES FOR MULTIPLE LIGAND SPECIFICITY OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN

Kim, S.-H., Oh, B.-H.

(1994) J Biological Chem 269: 26323-26330

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN (protein)
Unique Ligands	ORN

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1LFD \| pdb_00001lfd	Download File View File

CRYSTAL STRUCTURE OF THE ACTIVE RAS PROTEIN COMPLEXED WITH THE RAS-INTERACTING DOMAIN OF RALGDS

Huang, L., Hofer, F., Martin, G.S., Kim, S.-H.

(1998) Nat Struct Biol 5: 422-426

Released	1999-05-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	RALGDS (protein) RAS (protein)
Unique Ligands	GNP, MG

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1LIH \| pdb_00001lih	Download File View File

THREE-DIMENSIONAL STRUCTURES OF THE LIGAND-BINDING DOMAIN OF THE BACTERIAL ASPARTATE RECEPTOR WITH AND WITHOUT A LIGAND

Kim, S.-H., Scott, W., Yeh, J.I., Prive, G.G., Milburn, M.

(1991) Science 254: 1342-1347

Released	1995-09-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	ASPARTATE RECEPTOR (protein)
Unique Ligands	PHN

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1LQL \| pdb_00001lql	Download File View File

Crystal structure of OsmC like protein from Mycoplasma pneumoniae

Choi, I.-G., Shin, D.H., Brandsen, J., Jancarik, J., Kim, R., Yokota, H., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2003) J Struct Funct Genomics 4: 31-34

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Mycoplasmoides pneumoniae
Macromolecule	osmotical inducible protein C like family (protein)

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1LST \| pdb_00001lst	Download File View File

THREE-DIMENSIONAL STRUCTURES OF THE PERIPLASMIC LYSINE-, ARGININE-, ORNITHINE-BINDING PROTEIN WITH AND WITHOUT A LIGAND

Kim, S.-H., Oh, B.-H.

(1993) J Biological Chem 268: 11348-11355

Released	1994-06-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN (protein)
Unique Ligands	LYS

1 to 25 of 122 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AIN | pdb_00001ain

1B0U | pdb_00001b0u

1B8P | pdb_00001b8p

1B8U | pdb_00001b8u

1BCC | pdb_00001bcc

1BU2 | pdb_00001bu2

1COJ | pdb_00001coj

1DM2 | pdb_00001dm2

1G2I | pdb_00001g2i

1G5S | pdb_00001g5s

1HCK | pdb_00001hck

1HCL | pdb_00001hcl

1HMC | pdb_00001hmc

1ILW | pdb_00001ilw

1IM5 | pdb_00001im5

1J97 | pdb_00001j97

1JX7 | pdb_00001jx7

1KXU | pdb_00001kxu

1LAF | pdb_00001laf

1LAG | pdb_00001lag

1LAH | pdb_00001lah

1LFD | pdb_00001lfd

1LIH | pdb_00001lih

1LQL | pdb_00001lql

1LST | pdb_00001lst