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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kohno, T."

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Search Summary

This query matches 50 Structures.

Refinements

Structure Determination Methodology

experimental (50)

Scientific Name of Source Organism

	Homo sapiens (18)
	Aloe arborescens (3)
	Rheum palmatum (3)
	Agelenopsis aperta (2)
	Conus magus (2)
	Conus textile (2)
	Huperzia serrata (2)
	Rattus norvegicus (2)
	Thermus thermophilus HB8 (2)
	Vespa simillima xanthoptera (2)

More...

Taxonomy

	Eukaryota (37)
	Bacteria (4)
	Eukaryota (eukaryotes) (4)
	Riboviria (2)
	Riboviria (RNA viruses and viroids) (1)
	other sequences (1)

Experimental Method

	SOLUTION NMR (28)
	X-RAY DIFFRACTION (21)
	SOLID-STATE NMR (1)

Polymer Entity Type

Protein (50)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (7)
	2005 - 2009 (23)
	2010 - 2014 (11)
	2015 - 2019 (2)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (9)
	Hydrolases (7)
	Oxidoreductases (2)

Membrane Protein Annotation

	OPM (6)
	mpstruc (2)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (35)
	Cyclic (15)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (8)
	Alpha and beta proteins (a+b) (8)
	Small proteins (8)
	All alpha proteins (3)
	Artifacts (5)
	All beta proteins (2)
	Peptides (1)

AllSelected

1 to 25 of 50 Structures

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1A13 \| pdb_00001a13	Download File View File

G PROTEIN-BOUND CONFORMATION OF MASTOPARAN-X, NMR, 14 STRUCTURES

Kusunoki, H., Wakamatsu, K., Sato, K., Miyazawa, T., Kohno, T.

(1998) Biochemistry 37: 4782-4790

Released	1999-01-13
Method	SOLUTION NMR
Organisms	Vespa simillima xanthoptera
Macromolecule	MASTOPARAN-X (protein)

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1F3K \| pdb_00001f3k	Download File View File

THREE-DIMENSIONAL SOLUTION STRUCTURE OF OMEGA-CONOTOXIN TXVII, AN L-TYPE CALCIUM CHANNEL BLOCKER

Kobayashi, K., Sasaki, T., Sato, K., Kohno, T.

(2000) Biochemistry 39: 14761-14767

Released	2000-12-13
Method	SOLUTION NMR
Organisms	Conus textile
Macromolecule	OMEGA-CONOTOXIN TXVII (protein)

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1FU3 \| pdb_00001fu3	Download File View File

THREE-DIMENSIONAL STRUCTURE IN SOLUTION OF THE SODIUM CHANNEL AGONIST/ANTAGONIST DELTA-CONOTOXIN TXVIA

Kohno, T., Sasaki, T., Fainzilber, M., Sato, K.

(2002) J Biological Chem 277: 36387-36391

Released	2002-09-20
Method	SOLUTION NMR
Organisms	Conus textile
Macromolecule	DELTA-CONOTOXIN TXVIA (protein)

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1HD0 \| pdb_00001hd0	Download File View File

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR

Nagata, T., Kurihara, Y., Matsuda, G., Saeki, J., Kohno, T., Yanagida, Y., Ishikawa, F., Uesugi, S., Katahira, M.

(1999) J Mol Biology 287: 221-237

Released	2000-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0) (protein)

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1HD1 \| pdb_00001hd1	Download File View File

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR

Nagata, T., Kurihara, Y., Matsuda, G., Saeki, J., Kohno, T., Yanagida, Y., Ishikawa, F., Uesugi, S., Katahira, M.

(1999) J Mol Biology 287: 221-237

Released	2000-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0) (protein)

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1J1B \| pdb_00001j1b	Download File View File

Binary complex structure of human tau protein kinase I with AMPPNP

Aoki, M., Yokota, T., Sugiura, I., Sasaki, C., Hasegawa, T., Okumura, C., Kohno, T., Sugio, S., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 439-446

Released	2003-12-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	ANP

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1J1C \| pdb_00001j1c	Download File View File

Binary complex structure of human tau protein kinase I with ADP

Aoki, M., Yokota, T., Sugiura, I., Sasaki, C., Hasegawa, T., Okumura, C., Kohno, T., Sugio, S., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 439-446

Released	2003-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	ADP, MG

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1J1J \| pdb_00001j1j	Download File View File

Crystal Structure of human Translin

Sugiura, I., Sasaki, C., Hasegawa, T., Kohno, T., Sugio, S., Moriyama, H., Kasai, M., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 674-679

Released	2003-12-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Translin (protein)

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1NC8 \| pdb_00001nc8	Download File View File

HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE MINIMAL ACTIVE DOMAIN OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN, 15 STRUCTURES

Kodera, Y., Sato, K., Tsukahara, T., Komatsu, H., Maeda, T., Kohno, T.

(1998) Biochemistry 37: 17704-17713

Released	1999-05-25
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 2
Macromolecule	NUCLEOCAPSID PROTEIN (protein)
Unique Ligands	ZN

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1OAV \| pdb_00001oav	Download File View File

OMEGA-AGATOXIN IVA

Kim, J.I., Konishi, S., Iwai, H., Kohno, T., Gouda, H., Shimada, I., Sato, K., Arata, Y.

(1995) J Mol Biology 250: 659-671

Released	1995-10-15
Method	SOLUTION NMR
Organisms	Agelenopsis aperta
Macromolecule	OMEGA-AGATOXIN IVA (protein)

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1OAW \| pdb_00001oaw	Download File View File

OMEGA-AGATOXIN IVA

Kim, J.I., Konishi, S., Iwai, H., Kohno, T., Gouda, H., Shimada, I., Sato, K., Arata, Y.

(1995) J Mol Biology 250: 659-671

Released	1995-10-15
Method	SOLUTION NMR
Organisms	Agelenopsis aperta
Macromolecule	OMEGA-AGATOXIN IVA (protein)

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1OMG \| pdb_00001omg	Download File View File

NMR STUDY OF OMEGA-CONOTOXIN MVIIA

Kohno, T., Kim, J.-I., Kobayashi, K., Kodera, Y., Maeda, T., Sato, K.

(1995) Biochemistry 34: 10256-10265

Released	1996-04-03
Method	SOLUTION NMR
Organisms	Conus magus
Macromolecule	OMEGA-CONOTOXIN MVIIA (protein)

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1QCM \| pdb_00001qcm	Download File View File

AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES

Kohno, T., Kobayashi, K., Maeda, T., Sato, K., Takashima, A.

(1996) Biochemistry 35: 16094-16104

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	AMYLOID BETA PEPTIDE (protein)

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1T1T \| pdb_00001t1t	Download File View File

Solution Structure of Kurtoxin

Lee, C.W., Min, H.J., Cho, E.M., Kohno, T., Eu, Y.J., Kim, J.I.

To be published

Released	2005-06-28
Method	SOLUTION NMR
Organisms	Parabuthus transvaalicus
Macromolecule	Kurtoxin (protein)

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1V4Q \| pdb_00001v4q	Download File View File

Three-dimensional solution structure of the analogue peptide of omega-conotoxin MVIIC

Kobayashi, K., Sasaki, T., Sato, K., Kohno, T.

To be published

Released	2005-03-01
Method	SOLUTION NMR
Organisms	Conus magus
Macromolecule	omega-conotoxin MVIIC (protein)

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1V4R \| pdb_00001v4r	Download File View File

Solution structure of Streptmycal repressor TraR

Tanaka, T., Komatsu, C., Kobayashi, K., Sugai, M., Kataoka, M., Kohno, T.

To be published

Released	2005-03-01
Method	SOLUTION NMR
Organisms	Streptomyces
Macromolecule	Transcriptional Repressor (protein)

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1V5A \| pdb_00001v5a	Download File View File

Solution Structure of Covalitoxin I

Kohno, T., Sasaki, T., Sato, K.

To be published

Released	2005-03-01
Method	SOLUTION NMR
Macromolecule	Covalitoxin-I (protein)

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1WQB \| pdb_00001wqb	Download File View File

Three-dimensional Solution Strucutre of Aptotoxin VII, from the venom of a Trap-door Spider

Kobayashi, K., Kim, J.-I., Sato, K., Kohno, T.

To be published

Released	2005-12-13
Method	SOLUTION NMR
Organisms	Apomastus schlingeri
Macromolecule	Aptotoxin VII (protein)

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2CZP \| pdb_00002czp	Download File View File

Structural analysis of membrane-bound mastoparan-X by solid-state NMR

Todokoro, Y., Fujiwara, T., Yumen, I., Fukushima, K., Kang, S.-W., Park, J.-S., Kohno, T., Wakamatsu, K., Akutsu, H.

(2006) Biophys J 91: 1368-1379

Released	2006-07-04
Method	SOLID-STATE NMR
Organisms	Vespa simillima xanthoptera
Macromolecule	Mastoparan X (protein)

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2D1N \| pdb_00002d1n	Download File View File

Collagenase-3 (MMP-13) complexed to a hydroxamic acid inhibitor

Kohno, T., Hochigai, H., Yamashita, E., Tsukihara, T., Kanaoka, M.

(2006) Biochem Biophys Res Commun 344: 315-322

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	Collagenase 3 (protein)
Unique Ligands	CA, FA4, ZN

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2D1O \| pdb_00002d1o	Download File View File

Stromelysin-1 (MMP-3) complexed to a hydroxamic acid inhibitor

Kohno, T., Hochigai, H., Yamashita, E., Tsukihara, T., Kanaoka, M.

(2006) Biochem Biophys Res Commun 344: 315-322

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Stromelysin-1 (protein)
Unique Ligands	CA, FA4, ZN

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2D39 \| pdb_00002d39	Download File View File

Trivalent Recognition Unit of Innate Immunity System; Crystal Structure of human M-ficolin Fibrinogen-like Domain

Tanio, M., Kondo, S., Sugio, S., Kohno, T.

(2007) J Biological Chem 282: 3889-3895

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Ficolin-1 (protein)
Unique Ligands	CA

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2D3M \| pdb_00002d3m	Download File View File

Pentaketide chromone synthase complexed with coenzyme A

Morita, H., Kondo, S., Oguro, S., Noguchi, H., Sugio, S., Abe, I., Kohno, T.

(2007) Chem Biol 14: 359-369

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aloe arborescens
Macromolecule	pentaketide chromone synthase (protein)
Unique Ligands	COA

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2D51 \| pdb_00002d51	Download File View File

Pentaketide chromone synthase (M207G mutant)

Kohno, T., Morita, H.

(2007) Chem Biol 14: 359-369

Released	2006-11-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aloe arborescens
Macromolecule	pentaketide chromone synthase (protein)

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2D52 \| pdb_00002d52	Download File View File

Pentaketide chromone synthase (M207G mutant complexed with Coa)

Kohno, T., Morita, H.

(2007) Chem Biol 14: 359-369

Released	2006-11-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Aloe arborescens
Macromolecule	pentaketide chromone synthase (protein)
Unique Ligands	COA

1 to 25 of 50 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A13 | pdb_00001a13

1F3K | pdb_00001f3k

1FU3 | pdb_00001fu3

1HD0 | pdb_00001hd0

1HD1 | pdb_00001hd1

1J1B | pdb_00001j1b

1J1C | pdb_00001j1c

1J1J | pdb_00001j1j

1NC8 | pdb_00001nc8

1OAV | pdb_00001oav

1OAW | pdb_00001oaw

1OMG | pdb_00001omg

1QCM | pdb_00001qcm

1T1T | pdb_00001t1t

1V4Q | pdb_00001v4q

1V4R | pdb_00001v4r

1V5A | pdb_00001v5a

1WQB | pdb_00001wqb

2CZP | pdb_00002czp

2D1N | pdb_00002d1n

2D1O | pdb_00002d1o

2D39 | pdb_00002d39

2D3M | pdb_00002d3m

2D51 | pdb_00002d51

2D52 | pdb_00002d52