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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kotra, L.P."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Escherichia coli (9)
	synthetic construct (5)
	Gallus gallus (4)
	Homo sapiens (4)
	Bacillus subtilis (3)
	Tequintavirus T5 (3)
	Burkholderia pseudomallei (2)
	Lactiplantibacillus plantarum (2)
	Lactococcus lactis (2)
	Mus musculus (2)

More...

Taxonomy

	Bacteria (23)
	Eukaryota (10)
	other sequences (5)
	Duplodnaviria (3)

Experimental Method

X-RAY DIFFRACTION (36)

Polymer Entity Type

	Protein (36)
	DNA (6)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (6)
	1.5 - 2.0 (11)
	2.0 - 2.5 (11)
	2.5 - 3.0 (4)
	> 4.5 (3)

Release Date

	1980 - 1984 (2)
	1985 - 1989 (1)
	1990 - 1994 (2)
	1995 - 1999 (4)
	2000 - 2004 (8)
	2005 - 2009 (4)
	2010 - 2014 (12)
	2015 - 2019 (3)

Enzyme Classification Name

	Hydrolases (14)
	Oxidoreductases (7)
	Lyases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (4)
	Dihedral (4)
	Octahedral (4)
	Tetrahedral (2)

SCOP Classification

	All alpha proteins (14)
	Alpha and beta proteins (a/b) (7)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (4)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 36 Structures

Page 1 of 2

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1AEW \| pdb_00001aew	Download File View File

L-CHAIN HORSE APOFERRITIN

Hempstead, P.D., Yewdall, S.J., Lawson, D.M., Harrison, P.M., Artymiuk, P.J.

(1997) J Mol Biology 268: 424-448

Released	1997-09-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Equus caballus
Macromolecule	FERRITIN (protein)
Unique Ligands	CD

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1BDX \| pdb_00001bdx	Download File View File

E. COLI DNA HELICASE RUVA WITH BOUND DNA HOLLIDAY JUNCTION, ALPHA CARBONS AND PHOSPHATE ATOMS ONLY

Hargreaves, D., Rice, D.W., Sedelnikova, S.E., Artymiuk, P.J., Lloyd, R.G., Rafferty, J.B.

(1998) Nat Struct Biol 5: 441-446

Released	1999-11-24
Method	X-RAY DIFFRACTION 6 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	HOLLIDAY JUNCTION DNA HELICASE RUVA (protein) DNA (5'-D(PGPCPAPTPGPCPAPTPAPTPGPCPAPTPGPC)-3') (nucleic acid)

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1EUM \| pdb_00001eum	Download File View File

CRYSTAL STRUCTURE OF THE E.COLI FERRITIN ECFTNA

Stillman, T.J., Hempstead, P.D., Artymiuk, P.J., Andrews, S.C., Hudson, A.J., Treffry, A., Guest, J.R., Harrison, P.M.

(2001) J Mol Biology 307: 587-603

Released	2001-03-28
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	FERRITIN 1 (protein)

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1FHA \| pdb_00001fha	Download File View File

SOLVING THE STRUCTURE OF HUMAN H FERRITIN BY GENETICALLY ENGINEERING INTERMOLECULAR CRYSTAL CONTACTS

Artymiuk, P.J., Harrison, P.M.

(1991) Nature 349: 541-544

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	FERRITIN (protein)
Unique Ligands	CA, FE

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1HEW \| pdb_00001hew	Download File View File

REFINEMENT OF AN ENZYME COMPLEX WITH INHIBITOR BOUND AT PARTIAL OCCUPANCY. HEN EGG-WHITE LYSOZYME AND TRI-N-ACETYLCHITOTRIOSE AT 1.75 ANGSTROMS RESOLUTION

Cheetham, J.C., Artymiuk, P.J., Phillips, D.C.

(1992) J Mol Biology 224: 613-628

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Gallus gallus
Macromolecule	HEN EGG WHITE LYSOZYME (protein)
Unique branched monosaccharides	NAG

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1JKU \| pdb_00001jku	Download File View File

Crystal Structure of Manganese Catalase from Lactobacillus plantarum

Barynin, V.V., Whittaker, M.M., Antonyuk, S.V., Lamzin, V.S., Harrison, P.M., Artymiuk, P.J., Whittaker, J.W.

(2001) Structure 9: 725-738

Released	2002-07-13
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	pseudocatalase (protein)
Unique Ligands	CA, MN3, OH

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1JKV \| pdb_00001jkv	Download File View File

Crystal Structure of Manganese Catalase from Lactobacillus plantarum complexed with azide

Barynin, V.V., Whittaker, M.M., Antonyuk, S.V., Lamzin, V.S., Harrison, P.M., Artymiuk, P.J., Whittaker, J.W.

(2001) Structure 9: 725-738

Released	2002-07-13
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	pseudocatalase (protein)
Unique Ligands	AZI, CA, EDO, MN3, OH

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1L5J \| pdb_00001l5j	Download File View File

CRYSTAL STRUCTURE OF E. COLI ACONITASE B.

Williams, C.H., Stillman, T.J., Barynin, V.V., Sedelnikova, S.E., Tang, Y., Green, J., Guest, J.R., Artymiuk, P.J.

(2002) Nat Struct Biol 9: 447-452

Released	2002-06-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Aconitate hydratase 2 (protein)
Unique Ligands	F3S, TRA

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1LZ1 \| pdb_00001lz1	Download File View File

REFINEMENT OF HUMAN LYSOZYME AT 1.5 ANGSTROMS RESOLUTION. ANALYSIS OF NON-BONDED AND HYDROGEN-BOND INTERACTIONS

Artymiuk, P.J., Blake, C.C.F.

(1981) J Mol Biology 152: 737-762

Released	1985-01-02
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	HUMAN LYSOZYME (protein)

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1LZH \| pdb_00001lzh	Download File View File

THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION.

Artymiuk, P.J., Blake, C.C.F., Rice, D.W., Wilson, K.S.

(1982) Acta Crystallogr B 38: 778-783

Released	1981-09-28
Method	X-RAY DIFFRACTION 6 Å
Organisms	Gallus gallus
Macromolecule	HEN EGG WHITE LYSOZYME (protein)

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1QOY \| pdb_00001qoy	Download File View File

E.coli Hemolysin E (HlyE, ClyA, SheA)

Wallace, A.J., Stillman, T.J., Atkins, A., Jamieson, S.J., Bullough, P.A., Green, J., Artymiuk, P.J.

(2000) Cell 100: 265

Released	2000-01-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	HEMOLYSIN E (protein)
Unique Ligands	SO4

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1SUL \| pdb_00001sul	Download File View File

Crystal Structure of the apo-YsxC

Ruzheinikov, S.N., Das, K.S., Sedelnikova, S.E., Baker, P.J., Artymiuk, P.J., Garcia-Lara, J., Foster, S.J., Rice, D.W.

(2004) J Mol Biology 339: 265-278

Released	2004-05-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	GTP-binding protein YsxC (protein)

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1SVI \| pdb_00001svi	Download File View File

Crystal Structure of the GTP-binding protein YsxC complexed with GDP

Ruzheinikov, S.N., Das, S.K., Sedelnikova, S.E., Baker, P.J., Artymiuk, P.J., Garcia-Lara, J., Foster, S.J., Rice, D.W.

(2004) J Mol Biology 339: 265-278

Released	2004-05-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus subtilis
Macromolecule	GTP-binding protein YSXC (protein)
Unique Ligands	GDP

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1SVW \| pdb_00001svw	Download File View File

Crystal Structure of YsxC complexed with GMPPNP

Ruzheinikov, S.N., Das, S.K., Sedelnikova, S.E., Baker, P.J., Artymiuk, P.J., Garcia-Lara, J., Foster, S.J., Rice, D.W.

(2004) J Mol Biology 339: 265-278

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus subtilis
Macromolecule	GTP-binding protein YsxC (protein)
Unique Ligands	GTP, MG

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1ZS3 \| pdb_00001zs3	Download File View File

The crystal structure of the Lactococcus lactis MG1363 DpsB protein

Stillman, T.J., Upadhyay, M., Norte, V.A., Sedelnikova, S.E., Carradus, M., Tzokov, S., Bullough, P.A., Shearman, C.A., Gasson, M.J., Williams, C.H., Artymiuk, P.J., Green, J.

(2005) Mol Microbiol 57: 1101-1112

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Lactococcus lactis
Macromolecule	Lactococcus lactis MG1363 DpsA (protein)

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1ZUJ \| pdb_00001zuj	Download File View File

The crystal structure of the Lactococcus lactis MG1363 DpsA protein

Stillman, T.J., Upadhyay, M., Norte, V.A., Sedelnikova, S.E., Carradus, M., Tzokov, S., Bullough, P.A., Shearman, C.A., Gasson, M.J., Williams, C.H., Artymiuk, P.J., Green, J.

(2005) Mol Microbiol 57: 1101-1112

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Lactococcus lactis
Macromolecule	hypothetical protein Llacc01001955 (protein)

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2FHA \| pdb_00002fha	Download File View File

HUMAN H CHAIN FERRITIN

Hempstead, P.D., Artymiuk, P.J., Harrison, P.M.

(1997) J Mol Biology 268: 424-448

Released	1997-09-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	FERRITIN (protein)
Unique Ligands	CA

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2LZH \| pdb_00002lzh	Download File View File

THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION.

Artymiuk, P.J., Blake, C.C.F., Rice, D.W., Wilson, K.S.

(1982) Acta Crystallogr B 38: 778-783

Released	1981-09-28
Method	X-RAY DIFFRACTION 6 Å
Organisms	Gallus gallus
Macromolecule	HEN EGG WHITE LYSOZYME (protein)

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2V8T \| pdb_00002v8t	Download File View File

Crystal structure of Mn catalase from Thermus Thermophilus complexed with chloride

Antonyuk, S.V., Barynin, V.V., Vaguine, A.A., Melik-Adamyan, W.R., Popov, A.N., Lamsin, V.S., Harrison, P.M., Artymiuk, P.J.

(2000) Crystallogr Rep 45: 105

Released	2007-09-11
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Thermus thermophilus HB27
Macromolecule	MANGANESE-CONTAINING PSEUDOCATALASE (protein)
Unique Ligands	CL, LI, MN, SO4

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2V8U \| pdb_00002v8u	Download File View File

Atomic resolution structure of Mn catalase from Thermus Thermophilus

Barynin, V.V., Antonyuk, S.V., Vaguine, A.A., Melik-Adamyan, W.R., Popov, A.N., Lamsin, V.S., Harrison, P.M., Artymiuk, P.J.

(2000) Crystallogr Rep 45: 105

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Thermus thermophilus HB27
Macromolecule	MANGANESE-CONTAINING PSEUDOCATALASE (protein)
Unique Ligands	LI, MN, O, SO4

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3TU8 \| pdb_00003tu8	Download File View File

Crystal Structure of the Burkholderia Lethal Factor 1 (BLF1)

Cruz, A., Hautbergue, G.M., Artymiuk, P.J., Baker, P.J., Chang, C.T., Mahadi, N.M., Mobbs, G.W., Mohamed, R., Nathan, S., Partridge, L.J., Raih, M.F., Ruzheinikov, S.N., Sedelnikova, S.E., Wilson, S.A., Rice, D.W.

(2011) Science 334: 821-824

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.04 Å
Organisms	Burkholderia pseudomallei
Macromolecule	Burkholderia Lethal Factor 1 (BLF1) (protein)
Unique Ligands	BR

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3TUA \| pdb_00003tua	Download File View File

Crystal Structure of the Burkholderia Lethal Factor 1 (BLF1) C94S mutant

(2011) Science 334: 821-824

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.09 Å
Organisms	Burkholderia pseudomallei
Macromolecule	Burkholderia Lethal Factor 1 (BLF1) (protein)

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3V6O \| pdb_00003v6o	Download File View File

Leptin Receptor-antibody complex

Carpenter, B., Hemsworth, G.R., Ross, R.J., Artymiuk, P.J.

(2012) Structure 20: 487-497

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Leptin receptor (protein) Monoclonal antibody 9F8 fab fragment Heavy chain (protein) Monoclonal antibody 9F8 fab fragment Light chain (protein)
Unique Ligands	ACT, CYS, EDO, NA, NAG

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3VG0 \| pdb_00003vg0	Download File View File

Antibody Fab fragment

Carpenter, B., Hemsworth, G.R., Ross, R.J., Artymiuk, P.J.

(2012) Structure 20: 487-497

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Mus musculus
Macromolecule	Monoclonal antibody 9F8 Fab fragment H chain (protein) Monoclonal antibody 9F8 Fab fragment L chain (protein)
Unique Ligands	ACT, SO4
Unique branched monosaccharides	FUC, NAG