RCSB PDB: Search

1UDX \| pdb_00001udx	Download File View File

Crystal structure of the conserved protein TT1381 from Thermus thermophilus HB8

Kukimoto-Niino, M., Shirouzu, M., Murayama, K., Inoue, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Mol Biology 337: 761-770

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Thermus thermophilus HB8
Macromolecule	the GTP-binding protein Obg (protein)
Unique Ligands	ACT, MPD

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1WD5 \| pdb_00001wd5	Download File View File

Crystal structure of TT1426 from Thermus thermophilus HB8

Shibata, R., Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Protein Sci 14: 823-827

Released	2004-11-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	hypothetical protein TT1426 (protein)
Unique Ligands	MES

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1WEH \| pdb_00001weh	Download File View File

Crystal structure of the conserved hypothetical protein TT1887 from Thermus thermophilus HB8

Kukimoto-Niino, M., Murayama, K., Idaka, M., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Protein Sci 13: 3038-3042

Released	2004-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Conserved hypothetical protein TT1887 (protein)

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1WEK \| pdb_00001wek	Download File View File

Crystal structure of the conserved hypothetical protein TT1465 from Thermus thermophilus HB8

Kukimoto-Niino, M., Murayama, K., Kato-Murayama, M., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Protein Sci 13: 3038-3042

Released	2004-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus
Macromolecule	hypothetical protein TT1465 (protein)
Unique Ligands	PO4

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1WZ7 \| pdb_00001wz7	Download File View File

Crystal structure of enhancer of rudimentary homologue (ERH)

Arai, R., Kukimoto-Niino, M., Uda-Tochio, H., Morita, S., Uchikubo-Kamo, T., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Protein Sci 14: 1888-1893

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Enhancer of rudimentary homolog (protein)

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1X3S \| pdb_00001x3s	Download File View File

Crystal structure of human Rab18 in complex with Gppnhp

Kukimoto-Niino, M., Murayama, K., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-11-10
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-18 (protein)
Unique Ligands	GNP, MG

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1X42 \| pdb_00001x42	Download File View File

Crystal structure of a haloacid dehalogenase family protein (PH0459) from Pyrococcus horikoshii OT3

Arai, R., Kukimoto-Niino, M., Sugahara, M., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) Protein Sci 15: 373-377

Released	2005-11-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical protein PH0459 (protein)

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2CWE \| pdb_00002cwe	Download File View File

Crystal structure of hypothetical transcriptional regulator protein, PH1932 from Pyrococcus horikoshii OT3

Arai, R., Kishishita, S., Kukimoto-Niino, M., Wang, H., Sugawara, M., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical transcription regulator protein, PH1932 (protein)

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2CXF \| pdb_00002cxf	Download File View File

RUN domain of Rap2 interacting protein x, crystallized in C2 space group

Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) J Biological Chem 281: 31843-31853

Released	2005-12-29
Method	X-RAY DIFFRACTION 3.07 Å
Organisms	Mus musculus
Macromolecule	rap2 interacting protein x (protein)

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2CXL \| pdb_00002cxl	Download File View File

RUN domain of Rap2 interacting protein x, crystallized in I422 space group

Kukimoto-Niino, M., Umehara, T., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) J Biological Chem 281: 31843-31853

Released	2005-12-30
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus
Macromolecule	rap2 interacting protein x (protein)

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2CXX \| pdb_00002cxx	Download File View File

Crystal structure of a probable GTP-binding protein engB

Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable GTP-binding protein engB (protein)
Unique Ligands	GDP

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2CZ4 \| pdb_00002cz4	Download File View File

Crystal structure of a putative PII-like signaling protein (TTHA0516) from Thermus thermophilus HB8

Arai, R., Fusatomi, E., Kukimoto-Niino, M., Kawaguchi, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-10
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Thermus thermophilus HB8
Macromolecule	hypothetical protein TTHA0516 (protein)
Unique Ligands	ACT, CL

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2DBY \| pdb_00002dby	Download File View File

Crystal structure of the GTP-binding protein YchF in complexed with GDP

Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-06-16
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Thermus thermophilus HB8
Macromolecule	GTP-binding protein (protein)
Unique Ligands	FMT, GDP

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2DWB \| pdb_00002dwb	Download File View File

Aurora-A kinase complexed with AMPPNP

Kukimoto-Niino, M., Murayama, K., Shirouzu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-07-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase 6 (protein)
Unique Ligands	ANP, SO4

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2DWG \| pdb_00002dwg	Download File View File

RUN domain of Rap2 interacting protein x, crystallized in P2(1)2(1)2(1) space group

Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) J Biological Chem 281: 31843-31853

Released	2006-10-24
Method	X-RAY DIFFRACTION 3.22 Å
Organisms	Mus musculus
Macromolecule	Protein RUFY3 (protein)

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2DWK \| pdb_00002dwk	Download File View File

Crystal structure of the RUN domain of mouse Rap2 interacting protein x

Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) J Biological Chem 281: 31843-31853

Released	2006-08-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Protein RUFY3 (protein)

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2DWQ \| pdb_00002dwq	Download File View File

Thermus thermophilus YchF GTP-binding protein

Kukimoto-Niino, M., Murayama, K., Shorouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-02-16
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Thermus thermophilus HB8
Macromolecule	GTP-binding protein (protein)

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2DYL \| pdb_00002dyl	Download File View File

Crystal structure of human mitogen-activated protein kinase kinase 7 activated mutant (S287D, T291D)

Kukimoto-Niino, M., Takagi, T., Kaminishi, T., Uchikubo-Kamo, T., Terada, T., Matsuzaki, O., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 7 (protein)

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2E0A \| pdb_00002e0a	Download File View File

Crystal structure of human pyruvate dehydrogenase kinase 4 in complex with AMPPNP

Kukimoto-Niino, M., Tokmakov, A., Terada, T., Shiromizu, I., Kawamoto, M., Matsusue, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2011) Acta Crystallogr D Biol Crystallogr 67: 763-773

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate dehydrogenase kinase isozyme 4 (protein)
Unique Ligands	ANP, MG

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2E87 \| pdb_00002e87	Download File View File

Crystal structure of hypothetical GTP-binding protein PH1320 from Pyrococcus horikoshii OT3, in complex with GDP

Kukimoto-Niino, M., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Hypothetical protein PH1320 (protein)
Unique Ligands	GDP, SO4

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2EB2 \| pdb_00002eb2	Download File View File

Crystal structure of mutated EGFR kinase domain (G719S)

Yoshikawa, S., Kukimoto-Niino, M., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Senba, K., Yamamoto, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2012) Oncogene

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)

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2EB3 \| pdb_00002eb3	Download File View File

Crystal structure of mutated EGFR kinase domain (L858R) in complex with AMPPNP

Yoshikawa, S., Kukimoto-Niino, M., Shirouzu, M., Senba, K., Yamamoto, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2012) Oncogene

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	ANP

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2EF1 \| pdb_00002ef1	Download File View File

Crystal structure of the extracellular domain of human CD38

Kukimoto-Niino, M., Nureki, O., Murayama, K., Shirouzu, M., Katada, T., Hara-Yokoyama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	EPE

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2EG9 \| pdb_00002eg9	Download File View File

Crystal structure of the truncated extracellular domain of mouse CD38

Kukimoto-Niino, M., Mishima, C., Wakiyama, M., Terada, T., Shirouzu, M., Hara-Yokoyama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	ADP-ribosyl cyclase 1 (protein)

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2PSM \| pdb_00002psm	Download File View File

Crystal structure of Interleukin 15 in complex with Interleukin 15 receptor alpha

Olsen, S.K., Murayama, K., Kishishita, S., Kukimoto-Niino, M., Terada, T., Shirouzu, M., Ota, N., Kanagawa, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) J Biological Chem 282: 37191-37204

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Mus musculus
Macromolecule	Interleukin-15 (protein) Interleukin-15 receptor alpha chain (protein)
Unique Ligands	BEN

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1UDX | pdb_00001udx

1WD5 | pdb_00001wd5

1WEH | pdb_00001weh

1WEK | pdb_00001wek

1WZ7 | pdb_00001wz7

1X3S | pdb_00001x3s

1X42 | pdb_00001x42

2CWE | pdb_00002cwe

2CXF | pdb_00002cxf

2CXL | pdb_00002cxl

2CXX | pdb_00002cxx

2CZ4 | pdb_00002cz4

2DBY | pdb_00002dby

2DWB | pdb_00002dwb

2DWG | pdb_00002dwg

2DWK | pdb_00002dwk

2DWQ | pdb_00002dwq

2DYL | pdb_00002dyl

2E0A | pdb_00002e0a

2E87 | pdb_00002e87

2EB2 | pdb_00002eb2

2EB3 | pdb_00002eb3

2EF1 | pdb_00002ef1

2EG9 | pdb_00002eg9

2PSM | pdb_00002psm