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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kumar, S."

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Search Summary

This query matches 162 Structures.

Refinements

Structure Determination Methodology

experimental (162)

Scientific Name of Source Organism

	Homo sapiens (28)
	Daboia russelii pulchella (20)
	Salpingoeca rosetta (14)
	Human immunodeficiency virus 1 (9)
	Entamoeba histolytica HM-1:IMSS (7)
	Scadoxus multiflorus (7)
	Arabidopsis thaliana (6)
	Escherichia coli K-12 (6)
	synthetic construct (5)
	Cicer arietinum (4)

More...

Taxonomy

	Eukaryota (111)
	Bacteria (33)
	Riboviria (14)
	other sequences (5)
	Archaea (3)
	Duplodnaviria (2)
	Viruses incertae sedis (2)

Experimental Method

	X-RAY DIFFRACTION (128)
	ELECTRON MICROSCOPY (21)
	SOLUTION NMR (10)
	NEUTRON DIFFRACTION (3)

Polymer Entity Type

	Protein (153)
	DNA (12)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (31)
	2.0 - 2.5 (47)
	2.5 - 3.0 (37)
	3.0 - 3.5 (11)
	3.5 - 4.0 (13)
	4.0 - 4.5 (3)
	> 4.5 (2)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (5)
	2005 - 2009 (34)
	2010 - 2014 (44)
	2015 - 2019 (23)
	2020 - 2024 (45)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (47)
	Transferases (17)
	Lyases (4)
	Oxidoreductases (6)
	Ligases (5)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (16)
	OPM (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (88)
	Cyclic (62)
	Dihedral (7)
	Tetrahedral (1)

SCOP Classification

	All alpha proteins (28)
	Alpha and beta proteins (a+b) (11)
	All beta proteins (9)
	Alpha and beta proteins (a/b) (22)
	Artifacts (10)
	Coiled coil proteins (4)
	Multi-domain proteins (alpha and beta) (3)
	Small proteins (1)

AllSelected

1 to 25 of 162 Structures

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1AC9 \| pdb_00001ac9	Download File View File

SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION REFINEMENT, 6 STRUCTURES

Foti, M., Marshalko, S., Schurter, E., Kumar, S., Beardsley, G.P., Schweitzer, B.I.

(1997) Biochemistry 36: 5336-5345

Released	1997-07-07
Method	SOLUTION NMR
Macromolecule	DNA (nucleic acid)

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1AUL \| pdb_00001aul	Download File View File

SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE

Kumar, S., Reed, M.W., Gamper Junior, H.B., Gorn, V.V., Lukhtanov, E.A., Foti, M., West, J., Meyer Junior, R.B., Schweitzer, B.I.

(1998) Nucleic Acids Res 26: 831-838

Released	1997-12-24
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPAPGPAPTPAPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PTHXPGPAPTPTPAPTPCPTPG)-3') (nucleic acid)

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1DQ7 \| pdb_00001dq7	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A NEUROTOXIN FROM RED SCORPION (BUTHUS TAMULUS) AT 2.2A RESOLUTION.

Sharma, M., Yadav, S., Karthikeyan, S., Kumar, S., Paramasivam, M., Srinivasan, A., Singh, T.P.

To be published

Released	2000-12-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mesobuthus tamulus
Macromolecule	NEUROTOXIN (protein)

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1F9B \| pdb_00001f9b	Download File View File

MELANIN PROTEIN INTERACTION: X-RAY STRUCTURE OF THE COMPLEX OF MARE LACTOFERRIN WITH MELANIN MONOMERS

Kumar, S., Singh, T.P., Sharma, A.K., Singh, N., Raman, G.

(2001) Proteins 45: 229-236

Released	2001-02-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Equus caballus
Macromolecule	LACTOTRANSFERRIN (protein)
Unique Ligands	3ID, BCT, FE

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1OYO \| pdb_00001oyo	Download File View File

Regulation of protease activity by melanin: Crystal structure of the complex formed between proteinase K and melanin monomers at 2.0 resolution

Singh, N., Sharma, S., Kumar, S., Raman, G., Singh, T.P.

To be published

Released	2003-05-20
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Parengyodontium album
Macromolecule	Proteinase K (protein)
Unique Ligands	3ID, CA

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1QDF \| pdb_00001qdf	Download File View File

THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, APTAMER (15MER) DNA

Marathias, V.M., Wang, K.Y., Kumar, S., Swaminathan, S., Bolton, P.H.

(1996) J Mol Biology 260: 378-394

Released	1996-11-08
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPTPTPGPGPTPGPTPGPGPTPTPGP*G)-3') (nucleic acid)

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1QDH \| pdb_00001qdh	Download File View File

THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, APTAMER (15MER) DNA

Marathias, V.M., Wang, K.Y., Kumar, S., Swaminathan, S., Bolton, P.H.

(1996) J Mol Biology 260: 378-394

Released	1996-11-08
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPTPTPGPGPTPGPTPGPGPTPTPGP*G)-3') (nucleic acid)
Unique Ligands	MN

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1QDI \| pdb_00001qdi	Download File View File

THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, (12MER) DNA

Marathias, V.M., Wang, K.Y., Kumar, S., Swaminathan, S., Bolton, P.H.

(1996) J Mol Biology 260: 378-394

Released	1996-11-08
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3') (nucleic acid)

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1QDK \| pdb_00001qdk	Download File View File

THE NMR STUDY OF DNA QUADRUPLEX STRUCTURE, (12MER) DNA

Marathias, V.M., Wang, K.Y., Kumar, S., Swaminathan, S., Bolton, P.H.

(1996) J Mol Biology 260: 378-394

Released	1996-11-08
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3') (nucleic acid)
Unique Ligands	MN

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1RGY \| pdb_00001rgy	Download File View File

Citrobacter freundii GN346 Class C beta-Lactamase Complexed with Transition-State Analog of Cefotaxime

Nukaga, M., Kumar, S., Nukaga, K., Pratt, R.F., Knox, J.R.

(2004) J Biological Chem 279: 9344-9352

Released	2004-04-06
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Citrobacter freundii
Macromolecule	beta-lactamase (protein)
Unique Ligands	MPD, PTX

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1RGZ \| pdb_00001rgz	Download File View File

Enterobacter cloacae GC1 Class C beta-Lactamase Complexed with Transition-State Analog of Cefotaxime

Nukaga, M., Kumar, S., Nukaga, K., Pratt, R.F., Knox, J.R.

(2004) J Biological Chem 279: 9344-9352

Released	2004-04-06
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Enterobacter cloacae
Macromolecule	class C beta-lactamase (protein)
Unique Ligands	GOL, PTX

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2FHT \| pdb_00002fht	Download File View File

Crystal Structure of Viral Macrophage Inflammatory Protein-II

Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

(2007) Proteins 67: 243-246

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Human herpesvirus 8 type P (isolate GK18)
Macromolecule	Viral macrophage inflammatory protein-II (protein)

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2FJ2 \| pdb_00002fj2	Download File View File

Crystal Structure of Viral Macrophage Inflammatory Protein-II

Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

(2007) Proteins 67: 243-246

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human herpesvirus 8 type P (isolate GK18)
Macromolecule	Viral macrophage inflammatory protein-II (protein)

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2LXN \| pdb_00002lxn	Download File View File

Solution NMR structure of glutamine amido transferase subunit of gaunosine monophosphate synthetase from Methanocaldococcus jannaschii

Ali, R., Kumar, S., Balaram, H., Sarma, S.P.

(2012) Biomol NMR Assign 6: 193-196

Released	2013-06-12
Method	SOLUTION NMR
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	GMP synthase [glutamine-hydrolyzing] subunit A (protein)

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2NXQ \| pdb_00002nxq	Download File View File

Crystal structure of calcium binding protein 1 from Entamoeba histolytica: a novel arrangement of EF hand motifs

Kumar, S., Padhan, N., Alam, N., Gourinath, S.

(2007) Proteins 68: 990-998

Released	2007-08-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Entamoeba histolytica HM-1:IMSS
Macromolecule	Calcium-binding protein (protein)
Unique Ligands	ACT, CA

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2O1N \| pdb_00002o1n	Download File View File

Crystal structure of a complex of phospholipase A2 with a peptide Ala-Ile-Ala-Ser at 2.8 A resolution

Kumar, S., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Daboia russelii pulchella
Macromolecule	Ala-Ile-Ala-Ser peptide (protein) Phospholipase A2 VRV-PL-VIIIa (protein)

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2OLI \| pdb_00002oli	Download File View File

Crystal structure of the complex formed between a group II phospholipase A2 and an indole derivative at 2.2 A resolution

Kumar, S., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	IOP

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2OTF \| pdb_00002otf	Download File View File

Crystal structure of the complex formed between phospholipase A2 and atenolol at 1.95 A resolution

Kumar, S., Singh, N., Sharma, S., Bhushan, A., Kaur, P., Singh, T.P.

To be published

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	2TN

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2OTH \| pdb_00002oth	Download File View File

Crystal structure of a ternary complex of phospholipase A2 with indomethacin and nimesulide at 2.9 A resolution

Kumar, S., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	CCN, IMN, NIM

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2OUB \| pdb_00002oub	Download File View File

Crystal structure of the complex formed between phospholipase A2 and atenolol at 2.75 A resolution

Kumar, S., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	2TN

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2OYF \| pdb_00002oyf	Download File View File

Crystal Structure of the complex of phospholipase A2 with indole acetic acid at 1.2 A resolution

Kumar, S., Hariprasad, G., Singh, N., Sharma, S., Kaur, P., Perbandt, M., Betzel, C., Singh, T.P.

To be published

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	ACY, IAC, SO4

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2PB8 \| pdb_00002pb8	Download File View File

Crystal structure of the complex formed between phospholipase A2 and peptide Ala-Val-Tyr-Ser at 2.0 A resolution

Kumar, S., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published

Released	2007-04-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Daboia russelii pulchella
Macromolecule	AVYS (protein) Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	ACT

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2PMJ \| pdb_00002pmj	Download File View File

Crystal structure of the complex formed between phospholipase A2 and 1, 2 benzopyrone at 2.4 A resolution

Kumar, S., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	CCN, COU

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2PVT \| pdb_00002pvt	Download File View File

Crystal structure of a new isoform of phospholipase A2 from russells viper at 2.1 A resolution

Kumar, S., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Daboia russelii pulchella
Macromolecule	phospholipase A2 (protein)

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2PWS \| pdb_00002pws	Download File View File

Crystal structure of the complex formed between phospholipase A2 and 2-(4-isobutyl-phenyl)-propionic acid at 2.2 A resolution

Kumar, S., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	IBP

1 to 25 of 162 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AC9 | pdb_00001ac9

1AUL | pdb_00001aul

1DQ7 | pdb_00001dq7

1F9B | pdb_00001f9b

1OYO | pdb_00001oyo

1QDF | pdb_00001qdf

1QDH | pdb_00001qdh

1QDI | pdb_00001qdi

1QDK | pdb_00001qdk

1RGY | pdb_00001rgy

1RGZ | pdb_00001rgz

2FHT | pdb_00002fht

2FJ2 | pdb_00002fj2

2LXN | pdb_00002lxn

2NXQ | pdb_00002nxq

2O1N | pdb_00002o1n

2OLI | pdb_00002oli

2OTF | pdb_00002otf

2OTH | pdb_00002oth

2OUB | pdb_00002oub

2OYF | pdb_00002oyf

2PB8 | pdb_00002pb8

2PMJ | pdb_00002pmj

2PVT | pdb_00002pvt

2PWS | pdb_00002pws