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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Landon, C."

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Search Summary

This query matches 65 Structures.

Refinements

Structure Determination Methodology

experimental (65)

Scientific Name of Source Organism

	Cystovirus phi6 (19)
	Pseudomonas phage phi12 (16)
	Enterobacteria phage PRD1 (14)
	Infectious pancreatic necrosis virus (5)
	synthetic construct (5)
	Corticovirus PM2 (4)
	Pseudomonas phage phi8 (4)
	Neurospora crassa (2)
	Pseudomonas phage phi13 (1)

Taxonomy

	Riboviria (45)
	Varidnaviria (18)
	other sequences (5)
	Eukaryota (2)

Experimental Method

	X-RAY DIFFRACTION (59)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (65)
	DNA (10)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (19)
	2.5 - 3.0 (15)
	3.0 - 3.5 (13)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)
	> 4.5 (7)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (23)
	2005 - 2009 (18)
	2010 - 2014 (23)

Enzyme Classification Name

	Transferases (25)
	Hydrolases (2)

Symmetry Type

	Asymmetric (25)
	Cyclic (32)
	Icosahedral (8)

SCOP Classification

	Low resolution protein structures (6)
	Alpha and beta proteins (a/b) (16)
	Multi-domain proteins (alpha and beta) (13)
	All beta proteins (5)
	Artifacts (3)

AllSelected

1 to 25 of 65 Structures

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1CJD \| pdb_00001cjd	Download File View File

THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON

Benson, S.D., Bamford, J.K.H., Bamford, D.H., Burnett, R.M.

(1999) Cell 98: 825-833

Released	1999-09-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	PROTEIN (MAJOR CAPSID PROTEIN (P3)) (protein)

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1GW7 \| pdb_00001gw7	Download File View File

QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY.

San Martin, C., Huiskonen, J., Bamford, J.K.H., Butcher, S.J., Fuller, S.D., Bamford, D.H., Burnett, R.M.

(2002) Nat Struct Biol 9: 756

Released	2002-03-13
Method	ELECTRON MICROSCOPY 13.5 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (protein)

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1GW8 \| pdb_00001gw8	Download File View File

quasi-atomic resolution model of bacteriophage PRD1 sus607 mutant, obtained by combined cryo-EM and X-ray crystallography.

San Martin, C., Huiskonen, J., Bamford, J.K.H., Butcher, S.J., Fuller, S.D., Bamford, D.H., Burnett, R.M.

(2002) Nat Struct Biol 9: 756

Released	2002-03-15
Method	ELECTRON MICROSCOPY 13.3 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (protein)

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1HB5 \| pdb_00001hb5	Download File View File

quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography.

San Martin, C., Burnett, R.M., De Haas, F., Heinkel, R., Rutten, T., Fuller, S.D., Butcher, S.J., Bamford, D.H.

(2001) Structure 9: 917

Released	2001-12-05
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	BACTERIOPHAGE PRD1 P3-SHELL (protein)

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1HB7 \| pdb_00001hb7	Download File View File

quasi-atomic resolution model of bacteriophage PRD1 sus1 mutant, obtained by combined cryo-EM and X-ray crystallography.

San Martin, C., Burnett, R.M., De Haas, F., Heinkel, R., Rutten, T., Fuller, S.D., Butcher, S.J., Bamford, D.H.

(2001) Structure 9: 917

Released	2001-12-05
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	BACTERIOPHAGE PRD1 SUS1 MUTANT CAPSID (protein)

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1HB9 \| pdb_00001hb9	Download File View File

quasi-atomic resolution model of bacteriophage PRD1 wild type virion, obtained by combined cryo-EM and X-ray crystallography.

San Martin, C., Burnett, R.M., De Haas, F., Heinkel, R., Rutten, T., Fuller, S.D., Butcher, S.J., Bamford, D.H.

(2001) Structure 9: 917

Released	2001-12-05
Method	ELECTRON MICROSCOPY 25 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	BACTERIOPHAGE PRD1 (protein)

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1HHS \| pdb_00001hhs	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cystovirus phi6
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN

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1HHT \| pdb_00001hht	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein) DNA (5'-(TPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	MN

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1HI0 \| pdb_00001hi0	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus initiation complex

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein) DNA (5'-(TPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	GTP, MG, MN

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1HI1 \| pdb_00001hi1	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus bound NTP

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein)
Unique Ligands	ATP

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1HI8 \| pdb_00001hi8	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein)
Unique Ligands	MG

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1HQN \| pdb_00001hqn	Download File View File

THE SELENOMETHIONINE DERIVATIVE OF P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1.

Benson, S.D., Bamford, J.K.H., Bamford, D.H., Burnett, R.M.

(2002) Acta Crystallogr D Biol Crystallogr 58: 39-59

Released	2001-01-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (protein)

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1HX6 \| pdb_00001hx6	Download File View File

P3, THE MAJOR COAT PROTEIN OF THE LIPID-CONTAINING BACTERIOPHAGE PRD1.

Benson, S.D., Bamford, J.K.H., Bamford, D.H., Burnett, R.M.

(2002) Acta Crystallogr D Biol Crystallogr 58: 39-59

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (protein)
Unique Ligands	CL, MPD, NA

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1N7U \| pdb_00001n7u	Download File View File

THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM I

Xu, L., Benson, S.D., Butcher, S.J., Bamford, D.H., Burnett, R.M.

(2003) Structure 11: 309-322

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	Adsorption protein P2 (protein)
Unique Ligands	ACT, CA

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1N7V \| pdb_00001n7v	Download File View File

THE RECEPTOR-BINDING PROTEIN P2 OF BACTERIOPHAGE PRD1: CRYSTAL FORM III

Xu, L., Benson, S.D., Butcher, S.J., Bamford, D.H., Burnett, R.M.

(2003) Structure 11: 309-322

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	Adsorption protein P2 (protein)
Unique Ligands	ACT, CA

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1W44 \| pdb_00001w44	Download File View File

P4 protein from Bacteriophage PHI12 in complex with ADP

Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H., Stuart, D.I.

(2004) Cell 118: 743

Released	2004-10-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas phage phi12
Macromolecule	NTPASE P4 (protein)
Unique Ligands	ADP

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1W46 \| pdb_00001w46	Download File View File

P4 protein from Bacteriophage PHI12 in complex with ADP and MG

Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H., Stuart, D.I.

(2004) Cell 118: 743

Released	2004-11-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pseudomonas phage phi12
Macromolecule	NTPASE P4 (protein)
Unique Ligands	ADP, MG

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1W47 \| pdb_00001w47	Download File View File

P4 protein from Bacteriophage PHI12 in complex with ADP and MN

Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H., Stuart, D.I.

(2004) Cell 118: 743

Released	2004-11-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas phage phi12
Macromolecule	NTPASE P4 (protein)
Unique Ligands	ADP, MN

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1W48 \| pdb_00001w48	Download File View File

P4 protein from Bacteriophage PHI12 in complex with AMPcPP

Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H., Stuart, D.I.

(2004) Cell 118: 743

Released	2004-10-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas phage phi12
Macromolecule	NTPASE P4 (protein)
Unique Ligands	APC

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1W49 \| pdb_00001w49	Download File View File

P4 protein from Bacteriophage PHI12 in complex with AMPcPP and Mg

Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H., Stuart, D.I.

(2004) Cell 118: 743

Released	2004-10-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas phage phi12
Macromolecule	NTPASE P4 (protein)
Unique Ligands	APC, MG

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1W4A \| pdb_00001w4a	Download File View File

P4 protein from PHI12 in complex with AMPcPP and Mn

Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H., Stuart, D.I.

(2004) Cell 118: 743

Released	2004-10-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas phage phi12
Macromolecule	NTPASE P4 (protein)
Unique Ligands	APC, MN

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1W4B \| pdb_00001w4b	Download File View File

P4 protein from PHI12 in complex with product (AMPcPP Mg 22C)

Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H., Stuart, D.I.

(2004) Cell 118: 743

Released	2004-11-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas phage phi12
Macromolecule	NTPASE P4 (protein)
Unique Ligands	ADP, MG

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1W4C \| pdb_00001w4c	Download File View File

P4 protein from Bacteriophage PHI12 apo state

Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H., Stuart, D.I.

(2004) Cell 118: 743

Released	2004-11-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas phage phi12
Macromolecule	NTPASE P4 (protein)

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1W8X \| pdb_00001w8x	Download File View File

Structural analysis of PRD1

Abrescia, N.G.A., Cockburn, J.J.B., Grimes, J.M., Sutton, G.C., Diprose, J.M., Butcher, S.J., Fuller, S.D., San Martin, C., Burnett, R.M., Stuart, D.I., Bamford, D.H., Bamford, J.K.H.

(2004) Nature 432: 68

Released	2004-11-11
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (PROTEIN P3) (protein) PROTEIN P16 (protein) PROTEIN P30 (protein) PROTEIN P31 (protein)