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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Liger, D."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (6)
	Pyrococcus abyssi GE5 (3)
	Saccharomyces cerevisiae (3)
	Encephalitozoon cuniculi (1)
	Homo sapiens (1)
	Yarrowia lipolytica CLIB122 (1)

Taxonomy

	Eukaryota (12)
	Archaea (3)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (2)
	2.5 - 3.0 (7)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (5)
	2010 - 2014 (3)
	2015 - 2019 (5)

Enzyme Classification Name

	Isomerases (5)
	Transferases (5)
	Hydrolases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (4)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 15 of 15 Structures

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1SG3 \| pdb_00001sg3	Download File View File

Structure of allantoicase

Leulliot, N., Quevillon-Cheruel, S., Sorel, I., Graille, M., Meyer, P., Liger, D., Blondeau, K., Janin, J., van Tilbeurgh, H.

(2004) J Biological Chem 279: 23447-23452

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Allantoicase (protein)

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1T0I \| pdb_00001t0i	Download File View File

YLR011wp, a Saccharomyces cerevisiae NA(D)PH-dependent FMN reductase

Liger, D., Graille, M., Zhou, C.-Z., Leulliot, N., Quevillon-Cheruel, S., Blondeau, K., Janin, J., van Tilbeurgh, H.

(2004) J Biological Chem 279: 34890-34897

Released	2004-06-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	YLR011wp (protein)
Unique Ligands	CA, FMN

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1YM5 \| pdb_00001ym5	Download File View File

Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.

Liger, D., Quevillon-Cheruel, S., Sorel, I., Bremang, M., Blondeau, K., Aboulfath, I., Janin, J., Van Tilbeurgh, H., Leulliot, N., Paris-Sud Yeast Structural Genomics (YSG)

(2005) Proteins 60: 778-786

Released	2005-08-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region (protein)

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2BKW \| pdb_00002bkw	Download File View File

Yeast alanine:glyoxylate aminotransferase YFL030w

Meyer, P., Liger, D., Leulliot, N., Quevillon-Cheruel, S., Zhou, C.Z., Borel, F., Ferrer, J.L., Poupon, A., Janin, J., van Tilbeurgh, H.

(2005) Biochimie 87: 1041

Released	2005-11-02
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	ALANINE-GLYOXYLATE AMINOTRANSFERASE 1 (protein)
Unique Ligands	GLV, PLP

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2CIQ \| pdb_00002ciq	Download File View File

Structure-based functional annotation: Yeast ymr099c codes for a D- hexose-6-phosphate mutarotase.

Graille, M., Baltaze, J.-P., Leulliot, N., Liger, D., Quevillon-Cheruel, S., van Tilbeurgh, H.

(2006) J Biological Chem 281: 30175-30185

Released	2006-07-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	HEXOSE-6-PHOSPHATE MUTAROTASE (protein)
Unique Ligands	EPE, GOL, NA, SO4

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2CIR \| pdb_00002cir	Download File View File

Structure-based functional annotation: Yeast ymr099c codes for a D- hexose-6-phosphate mutarotase. Complex with glucose-6-phosphate

Graille, M., Baltaze, J.-P., Leulliot, N., Liger, D., Quevillon-Cheruel, S., van Tilbeurgh, H.

(2006) J Biological Chem 281: 30175-30185

Released	2006-07-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	HEXOSE-6-PHOSPHATE MUTAROTASE (protein)
Unique Ligands	BG6

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2CIS \| pdb_00002cis	Download File View File

Structure-based functional annotation: Yeast ymr099c codes for a D- hexose-6-phosphate mutarotase. Complex with tagatose-6-phosphate

Graille, M., Baltaze, J.-P., Leulliot, N., Liger, D., Quevillon-Cheruel, S., van Tilbeurgh, H.

(2006) J Biological Chem 281: 30175-30185

Released	2006-07-12
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	GLUCOSE-6-PHOSPHATE 1-EPIMERASE (protein)
Unique Ligands	BA, TA6

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3Q87 \| pdb_00003q87	Download File View File

Structure of E. cuniculi Mtq2-Trm112 complex responible for the methylation of eRF1 translation termination factor

Liger, D., Mora, L., Lazar, N., Figaro, S., Henri, J., Scrima, N., Buckingham, R.H., van Tilbeurgh, H., Heurgue-Hamard, V., Graille, M.

(2011) Nucleic Acids Res

Released	2011-05-18
Method	X-RAY DIFFRACTION 1.997 Å
Organisms	Encephalitozoon cuniculi
Macromolecule	N6 adenine specific DNA methylase (protein) Putative uncharacterized protein ECU08_1170 (protein)
Unique Ligands	SAM, ZN

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3ZUZ \| pdb_00003zuz	Download File View File

Structure of Shq1p C-terminal domain

Walbott, H., Machado-Pinilla, R., Liger, D., Blaud, M., Rety, S., Grozdanov, P.N., Godin, K., vanTilbeurgh, H., Varani, G., Meier, U.T., Leulliot, N.

(2011) Genes Dev 25: 2398

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	PROTEIN SHQ1 (protein)
Unique Ligands	IPA

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3ZV0 \| pdb_00003zv0	Download File View File

Structure of the SHQ1P-CBF5P complex

Walbott, H., Machado-Pinilla, R., Liger, D., Blaud, M., Rety, S., Grozdanov, P.N., Godin, K., vanTilbeurgh, H., Varani, G., Meier, U.T., Leulliot, N.

(2011) Genes Dev 25: 2398

Released	2011-11-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 (protein) PROTEIN SHQ1 (protein)
Unique Ligands	GOL

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5CM2 \| pdb_00005cm2	Download File View File

Structure of Y. lipolytica Trm9-Trm112 complex, a methyltransferase modifying U34 in the anticodon loop of some tRNAs

Letoquart, J., van Tran, N., Caroline, V., Aleksandrov, A., Lazar, N., Van Tilbeurgh, H., Liger, D., Graille, M.

(2015) Nucleic Acids Res 43: 10989-11002

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Yarrowia lipolytica CLIB122
Macromolecule	TRNA METHYLTRANSFERASE (protein) TRNA METHYLTRANSFERASE ACTIVATOR SUBUNIT (protein)
Unique Ligands	ZN

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6F87 \| pdb_00006f87	Download File View File

Crystal structure of P. abyssi Sua5 complexed with L-threonine and PPi

Pichard-Kostuch, A., Zhang, W., Liger, D., Daugeron, M.C., Letoquart, J., Li de la Sierra-Gallay, I., Forterre, P., Collinet, B., van Tilbeurgh, H., Basta, T.

(2018) RNA 24: 926-938

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Pyrococcus abyssi GE5
Macromolecule	Threonylcarbamoyl-AMP synthase (protein)
Unique Ligands	POP, THR

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6F89 \| pdb_00006f89	Download File View File

Structure of H234A/Y235A P.abyssi Sua5

Pichard-Kostuch, A., Zhang, W., Liger, D., Daugeron, M.C., Letoquart, J., Li de la Sierra-Gallay, I., Forterre, P., Collinet, B., van Tilbeurgh, H., Basta, T.

(2018) RNA 24: 926-938

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Pyrococcus abyssi GE5
Macromolecule	Threonylcarbamoyl-AMP synthase (protein)
Unique Ligands	BCT, THR

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6F8Y \| pdb_00006f8y	Download File View File

Crystal structure of P. abyssi Sua5 complexed with L-threonine

Pichard-Kostuch, A., Zhang, W., Liger, D., Daugeron, M.C., Letoquart, J., Li de la Sierra-Gallay, I., Forterre, P., Collinet, B., van Tilbeurgh, H., Basta, T.

(2018) RNA 24: 926-938

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Pyrococcus abyssi GE5
Macromolecule	Threonylcarbamoyl-AMP synthase (protein)
Unique Ligands	THR

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6GWJ \| pdb_00006gwj	Download File View File

Human OSGEP / LAGE3 / GON7 complex

Missoury, S., Liger, D., Durand, D., Collinet, B., Tilbeurgh, V.H.

(2019) Nat Commun 10: 3967-3967

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	EKC/KEOPS complex subunit GON7 (protein) EKC/KEOPS complex subunit LAGE3 (protein) Probable tRNA N6-adenosine threonylcarbamoyltransferase (protein)
Unique Ligands	GOL, MG, PEG, TRS

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1SG3 | pdb_00001sg3

Structure of allantoicase

1T0I | pdb_00001t0i

YLR011wp, a Saccharomyces cerevisiae NA(D)PH-dependent FMN reductase

1YM5 | pdb_00001ym5

Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.

2BKW | pdb_00002bkw

Yeast alanine:glyoxylate aminotransferase YFL030w

2CIQ | pdb_00002ciq

Structure-based functional annotation: Yeast ymr099c codes for a D- hexose-6-phosphate mutarotase.

2CIR | pdb_00002cir

Structure-based functional annotation: Yeast ymr099c codes for a D- hexose-6-phosphate mutarotase. Complex with glucose-6-phosphate

2CIS | pdb_00002cis

Structure-based functional annotation: Yeast ymr099c codes for a D- hexose-6-phosphate mutarotase. Complex with tagatose-6-phosphate

3Q87 | pdb_00003q87

Structure of E. cuniculi Mtq2-Trm112 complex responible for the methylation of eRF1 translation termination factor

3ZUZ | pdb_00003zuz

Structure of Shq1p C-terminal domain

3ZV0 | pdb_00003zv0

Structure of the SHQ1P-CBF5P complex

5CM2 | pdb_00005cm2

Structure of Y. lipolytica Trm9-Trm112 complex, a methyltransferase modifying U34 in the anticodon loop of some tRNAs

6F87 | pdb_00006f87

Crystal structure of P. abyssi Sua5 complexed with L-threonine and PPi

6F89 | pdb_00006f89

Structure of H234A/Y235A P.abyssi Sua5

6F8Y | pdb_00006f8y

Crystal structure of P. abyssi Sua5 complexed with L-threonine

6GWJ | pdb_00006gwj

Human OSGEP / LAGE3 / GON7 complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1SG3 | pdb_00001sg3

1T0I | pdb_00001t0i

1YM5 | pdb_00001ym5

2BKW | pdb_00002bkw

2CIQ | pdb_00002ciq

2CIR | pdb_00002cir

2CIS | pdb_00002cis

3Q87 | pdb_00003q87

3ZUZ | pdb_00003zuz

3ZV0 | pdb_00003zv0

5CM2 | pdb_00005cm2

6F87 | pdb_00006f87

6F89 | pdb_00006f89

6F8Y | pdb_00006f8y

6GWJ | pdb_00006gwj