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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mendez, J.H."

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Search Summary

This query matches 195 Structures.

Refinements

Structure Determination Methodology

experimental (195)

Scientific Name of Source Organism

	Methanosarcina mazei Go1 (46)
	synthetic construct (23)
	Saccharomyces cerevisiae S288C (15)
	Homo sapiens (11)
	Nakaseomyces glabratus (10)
	Nakaseomyces glabratus CBS 138 (10)
	Rattus norvegicus (8)
	Thermus thermophilus HB8 (8)
	Sulfolobus acidocaldarius DSM 639 (6)
	Thermochaetoides thermophila DSM 1495 (6)

More...

Taxonomy

	Eukaryota (78)
	Archaea (65)
	Bacteria (44)
	other sequences (23)
	Duplodnaviria (2)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (195)

Polymer Entity Type

	Protein (192)
	DNA (23)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (25)
	1.5 - 2.0 (65)
	2.0 - 2.5 (60)
	2.5 - 3.0 (37)
	3.0 - 3.5 (5)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (11)
	2000 - 2004 (7)
	2005 - 2009 (31)
	2010 - 2014 (37)
	2015 - 2019 (25)
	2020 - 2024 (80)
	2025 - 2029 (3)

Enzyme Classification Name

	Lyases (57)
	Hydrolases (16)
	Oxidoreductases (8)
	Transferases (4)

Membrane Protein Annotation

	mpstruc (7)
	PDBTM (4)
	MemProtMD (3)
	OPM (2)

Symmetry Type

	Asymmetric (136)
	Cyclic (45)
	Tetrahedral (10)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a+b) (21)
	Alpha and beta proteins (a/b) (28)
	All beta proteins (28)
	All alpha proteins (17)
	Artifacts (21)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 195 Structures

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1ASS \| pdb_00001ass	Download File View File

APICAL DOMAIN OF THE CHAPERONIN FROM THERMOPLASMA ACIDOPHILUM

Klumpp, M., Baumeister, W., Essen, L.-O.

(1997) Cell 91: 263-270

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermoplasma acidophilum
Macromolecule	THERMOSOME (protein)
Unique Ligands	NA, PO4

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1ASX \| pdb_00001asx	Download File View File

APICAL DOMAIN OF THE CHAPERONIN FROM THERMOPLASMA ACIDOPHILUM

Klumpp, M., Baumeister, W., Essen, L.-O.

(1997) Cell 91: 263-270

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	THERMOSOME (protein)
Unique Ligands	PO4

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1BRR \| pdb_00001brr	Download File View File

X-RAY STRUCTURE OF THE BACTERIORHODOPSIN TRIMER/LIPID COMPLEX

Essen, L.-O., Siegert, R., Oesterhelt, D.

(1998) Proc Natl Acad Sci U S A 95: 11673-11678

Released	1998-09-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Halobacterium salinarum
Macromolecule	PROTEIN (BACTERIORHODOPSIN) (protein)
Unique Ligands	ARC, BGC, GOL, OCT, RET
Unique branched monosaccharides	GLC, MAN, SGA

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1DJG \| pdb_00001djg	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH LANTHANUM

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 2753-2762

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, LA

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1DJH \| pdb_00001djh	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH BARIUM

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 2753-2762

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, BA

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1DJI \| pdb_00001dji	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH CALCIUM

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 2753-2762

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA

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1DJW \| pdb_00001djw	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-2-METHYLENE-1,2-CYCLIC-MONOPHOSPHONATE

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 1704-1718

Released	1997-07-23
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA, CIP

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1DJX \| pdb_00001djx	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-1,4,5-TRISPHOSPHATE

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 1704-1718

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA, I3P

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1DJY \| pdb_00001djy	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-2,4,5-TRISPHOSPHATE

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 1704-1718

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA, I2P

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1DJZ \| pdb_00001djz	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-4,5-BISPHOSPHATE

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 1704-1718

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, CA, IP2

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1E0R \| pdb_00001e0r	Download File View File

Beta-apical domain of thermosome

Bosch, G., Baumeister, W., Essen, L.-O.

(2000) J Mol Biology 301: 19

Released	2000-08-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermoplasma acidophilum
Macromolecule	THERMOSOME (protein)

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1E12 \| pdb_00001e12	Download File View File

Halorhodopsin, a light-driven chloride pump

Essen, L.-O., Kolbe, M., Oesterhelt, D.

(2000) Science 288: 1390

Released	2000-06-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium salinarum
Macromolecule	HALORHODOPSIN (protein)
Unique Ligands	CL, K, OLC, PLM, RET

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1FL2 \| pdb_00001fl2	Download File View File

CATALYTIC CORE COMPONENT OF THE ALKYLHYDROPEROXIDE REDUCTASE AHPF FROM E.COLI

Bieger, B., Essen, L.-O.

(2001) J Mol Biology 307: 1-8

Released	2001-03-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F (protein)
Unique Ligands	FAD, SO4

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1FX2 \| pdb_00001fx2	Download File View File

STRUCTURAL ANALYSIS OF ADENYLATE CYCLASES FROM TRYPANOSOMA BRUCEI IN THEIR MONOMERIC STATE

Bieger, B., Essen, L.-O.

(2001) EMBO J 20: 433-445

Released	2001-02-28
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Trypanosoma brucei
Macromolecule	RECEPTOR-TYPE ADENYLATE CYCLASE GRESAG 4.1 (protein)
Unique Ligands	DTT, SO4

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1IVL \| pdb_00001ivl	Download File View File

THE DE NOVO DESIGN OF AN ANTIBODY COMBINING SITE: CRYSTALLOGRAPHIC ANALYSIS OF THE VL DOMAIN CONFIRMS THE STRUCTURAL MODEL

Essen, L.-O., Skerra, A.

(1994) J Mol Biology 238: 226-244

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Mus musculus
Macromolecule	IGG-KAPPA M29B FV (LIGHT CHAIN) (protein)
Unique Ligands	IPA

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1MOG \| pdb_00001mog	Download File View File

Crystal structure of H. salinarum dodecin

Bieger, B., Essen, L.-O., Oesterhelt, D.

(2003) Structure 11: 375-385

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Halobacterium salinarum
Macromolecule	Dodecin (protein)
Unique Ligands	CL, MG, NA, RBF

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1MQK \| pdb_00001mqk	Download File View File

Crystal structure of the unliganded Fv-fragment of the anti-cytochrome C oxidase antibody 7E2

Essen, L.-O., Harrenga, A., Ostermeier, C., Michel, H.

(2003) Acta Crystallogr D Biol Crystallogr 59: 677-687

Released	2003-04-01
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Mus musculus
Macromolecule	antibody 7E2 FV fragment, heavy chain (protein) antibody 7E2 FV fragment, light chain (protein)

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1TEZ \| pdb_00001tez	Download File View File

COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS

Essen, L.-O., Carell, T., Mees, A., Klar, T.

(2004) Science 306: 1789-1793

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Synechococcus elongatus PCC 6301 synthetic construct
Macromolecule	Deoxyribodipyrimidine photo-lyase type I (protein) 5'-D(APTPCPGPGPCPT(TCP)PCPGPC)-3' (nucleic acid) 5'-D(TPCPGPC)-3' (nucleic acid) 5'-D(PCPGPAPAPGPCPCPGPA)-3' (nucleic acid) 5'-D(PGPCPCPGP*A)-3' (nucleic acid)
Unique Ligands	FAD, HDF, MG

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2CB9 \| pdb_00002cb9	Download File View File

Crystal structure of the thioesterase domain of the fengycin biosynthesis cluster

Samel, S., Marahiel, M.A., Essen, L.-O.

(2006) J Mol Biology 359: 876

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	FENGYCIN SYNTHETASE (protein)
Unique Ligands	ACY

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2CBG \| pdb_00002cbg	Download File View File

Crystal structure of the PMSF-inhibited thioesterase domain of the fengycin biosynthesis cluster

Samel, S., Marahiel, M.A., Essen, L.-O.

(2006) J Mol Biology 359: 876

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	FENGYCIN SYNTHETASE (protein)
Unique Ligands	PMS

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2CHP \| pdb_00002chp	Download File View File

Crystal structure of the dodecameric ferritin MrgA from B. subtilis 168

Essen, L.-O., Morbitzer, A.

(2006) Langmuir 22: 7185

Released	2007-04-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	METALLOREGULATION DNA-BINDING STRESS PROTEIN (protein)
Unique Ligands	PO4

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2GOP \| pdb_00002gop	Download File View File

The beta-propeller domain of the Trilobed protease from Pyrococcus furiosus reveals an open velcro topology

Bosch, J., Tamura, T., Tamura, N., Baumeister, W., Essen, L.-O.

(2007) Acta Crystallogr D Biol Crystallogr 63: 179-187

Released	2007-01-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus furiosus
Macromolecule	Trilobed Protease (protein)

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2ISD \| pdb_00002isd	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT

Essen, L.-O., Perisic, O., Williams, R.L.

(1996) Nature 380: 595-602

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT

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2J07 \| pdb_00002j07	Download File View File

Thermus DNA photolyase with 8-HDF antenna chromophore

Klar, T., Kaiser, G., Hennecke, U., Carell, T., Batschauer, A., Essen, L.-O.

(2006) Chembiochem 7: 1798

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermus thermophilus HB8
Macromolecule	DEOXYRIBODIPYRIMIDINE PHOTO-LYASE (protein)
Unique Ligands	CL, FAD, HDF, PO4

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2J08 \| pdb_00002j08	Download File View File

Thermus DNA photolyase with 8-Iod-riboflavin antenna chromophore

Klar, T., Kaiser, G., Hennecke, U., Carell, T., Batschauer, A., Essen, L.-O.

(2006) Chembiochem 7: 1798

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Thermus thermophilus HB8
Macromolecule	DEOXYRIBODIPYRIMIDINE PHOTO-LYASE (protein)
Unique Ligands	CL, FAD, IRF, PO4

1 to 25 of 195 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ASS | pdb_00001ass

1ASX | pdb_00001asx

1BRR | pdb_00001brr

1DJG | pdb_00001djg

1DJH | pdb_00001djh

1DJI | pdb_00001dji

1DJW | pdb_00001djw

1DJX | pdb_00001djx

1DJY | pdb_00001djy

1DJZ | pdb_00001djz

1E0R | pdb_00001e0r

1E12 | pdb_00001e12

1FL2 | pdb_00001fl2

1FX2 | pdb_00001fx2

1IVL | pdb_00001ivl

1MOG | pdb_00001mog

1MQK | pdb_00001mqk

1TEZ | pdb_00001tez

2CB9 | pdb_00002cb9

2CBG | pdb_00002cbg

2CHP | pdb_00002chp

2GOP | pdb_00002gop

2ISD | pdb_00002isd

2J07 | pdb_00002j07

2J08 | pdb_00002j08