RCSB PDB: Search

2CWN \| pdb_00002cwn	Download File View File

Crystal structure of mouse transaldolase

Handa, N., Arai, R., Nishino, A., Uchikubo, T., Takemoto, C., Morita, S., Kinoshita, Y., Nagano, Y., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-12-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Transaldolase (protein)

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2CZL \| pdb_00002czl	Download File View File

Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8 (Cys11 modified with beta-mercaptoethanol)

Arai, R., Nishino, A., Nagano, K., Kamo-Uchikubo, T., Nishimoto, M., Toyama, M., Terada, T., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) J Struct Biol 168: 575-581

Released	2006-01-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermus thermophilus HB8
Macromolecule	hypothetical protein TTHA1568 (protein)
Unique Ligands	K, TLA, XPE

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2DB0 \| pdb_00002db0	Download File View File

Crystal structure of PH0542

Nishino, A., Handa, N., Kishishita, S., Murayama, K., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-06-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	253aa long hypothetical protein (protein)

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2DBB \| pdb_00002dbb	Download File View File

Crystal structure of PH0061

Nishino, A., Hosaka, T., Murayama, K., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-06-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Putative HTH-type transcriptional regulator PH0061 (protein)

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2DUK \| pdb_00002duk	Download File View File

Crystal structure of MS0616

Hosaka, T., Nishino, A., Uchikubo, K.-T., Kishishita, S., Murayama, K., Shirouzu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-01-24
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Mus musculus
Macromolecule	MS0616 (protein)

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2DYQ \| pdb_00002dyq	Download File View File

Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3

Nishino, A., Saijo, S., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-18
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 precursor protein-binding family B member 3 (protein)

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2E3V \| pdb_00002e3v	Download File View File

Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4

Nishino, A., Saijo, S., Kishishita, S., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-06-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Neural cell adhesion molecule 1, 140 kDa isoform (protein)
Unique Ligands	BTB, EDO, PEG, PGE

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2YV8 \| pdb_00002yv8	Download File View File

Crystal structure of N-terminal domain of human galectin-8

Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-15
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Galectin-8 variant (protein)

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2YWE \| pdb_00002ywe	Download File View File

Crystal structure of LepA from Aquifex aeolicus

Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	GTP-binding protein lepA (protein)

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2YWF \| pdb_00002ywf	Download File View File

Crystal structure of GMPPNP-bound LepA from Aquifex aeolicus

Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	GTP-binding protein lepA (protein)
Unique Ligands	GNP, MG

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2YWG \| pdb_00002ywg	Download File View File

Crystal structure of GTP-bound LepA from Aquifex aeolicus

Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	GTP-binding protein LepA (protein)
Unique Ligands	GTP

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2YWH \| pdb_00002ywh	Download File View File

Crystal structure of GDP-bound LepA from Aquifex aeolicus

Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	GTP-binding protein LepA (protein)
Unique Ligands	GDP, MG

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2YWK \| pdb_00002ywk	Download File View File

Crystal structure of RRM-domain derived from human putative RNA-binding protein 11

Kawazoe, M., Takemoto, C., Kaminishi, T., Uchikubo-Kamo, T., Nishino, A., Morita, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-22
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	Putative RNA-binding protein 11 (protein)

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2YXS \| pdb_00002yxs	Download File View File

Crystal Structure of N-terminal domain of human galectin-8 with D-lactose

Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Homo sapiens
Macromolecule	Galectin-8 variant (protein)
Unique branched monosaccharides	BGC, GAL

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2YY1 \| pdb_00002yy1	Download File View File

Crystal structure of N-terminal domain of human galectin-9 containing L-acetyllactosamine

Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	Galectin-9 (protein)
Unique branched monosaccharides	GAL, NDG

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2YY9 \| pdb_00002yy9	Download File View File

Crystal structure of BTB domain from mouse HKR3

Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	Zinc finger and BTB domain-containing protein 48 (protein)

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2YZ8 \| pdb_00002yz8	Download File View File

Crystal structure of the 32th Ig-like domain of human obscurin (KIAA1556)

Saijo, S., Ohsawa, N., Nishino, A., Kishishita, S., Chen, L., Fu, Z.Q., Chrzas, J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Obscurin (protein)

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2Z0B \| pdb_00002z0b	Download File View File

Crystal structure of CBM20 domain of human putative glycerophosphodiester phosphodiesterase 5 (KIAA1434)

Saijo, S., Nishino, A., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Putative glycerophosphodiester phosphodiesterase 5 (protein)
Unique Ligands	PO4

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2Z0W \| pdb_00002z0w	Download File View File

Crystal structure of the 2nd CAP-Gly domain in human Restin-like protein 2 reveals a swapped-dimer

Saito, K., Yoshikawa, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	CAP-Gly domain-containing linker protein 4 (protein)

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2Z13 \| pdb_00002z13	Download File View File

Crystal structure of the N-terminal DUF1126 in human EF-hand domain

Saito, K., Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	EF-hand domain-containing family member C2 (protein)

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2Z14 \| pdb_00002z14	Download File View File

Crystal structure of the N-terminal DUF1126 in human ef-hand domain containing 2 protein

Saito, K., Olsen, S., Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	EF-hand domain-containing family member C2 (protein)

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2Z15 \| pdb_00002z15	Download File View File

Crystal structure of human Tob1 protein

Saito, K., Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Protein Tob1 (protein)

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2Z17 \| pdb_00002z17	Download File View File

Crystal structure of PDZ domain from human Pleckstrin homology, Sec7

Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Pleckstrin homology Sec7 and coiled-coil domains-binding protein (protein)

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3A3U \| pdb_00003a3u	Download File View File

Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8

Arai, R., Nishino, A., Nagano, K., Uchikubo-Kamo, T., Katsura, K., Nishimoto, M., Toyama, M., Terada, T., Kuramitsu, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) J Struct Biol 168: 575-581

Released	2009-07-14
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Menaquinone biosynthetic enzyme (protein)
Unique Ligands	7PE, K, TLA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2CWN | pdb_00002cwn

2CZL | pdb_00002czl

2DB0 | pdb_00002db0

2DBB | pdb_00002dbb

2DUK | pdb_00002duk

2DYQ | pdb_00002dyq

2E3V | pdb_00002e3v

2YV8 | pdb_00002yv8

2YWE | pdb_00002ywe

2YWF | pdb_00002ywf

2YWG | pdb_00002ywg

2YWH | pdb_00002ywh

2YWK | pdb_00002ywk

2YXS | pdb_00002yxs

2YY1 | pdb_00002yy1

2YY9 | pdb_00002yy9

2YZ8 | pdb_00002yz8

2Z0B | pdb_00002z0b

2Z0W | pdb_00002z0w

2Z13 | pdb_00002z13

2Z14 | pdb_00002z14

2Z15 | pdb_00002z15

2Z17 | pdb_00002z17

3A3U | pdb_00003a3u