RCSB PDB: Search

1A1F \| pdb_00001a1f	Download File View File

DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	THREE-FINGER ZIF268 PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPTPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1G \| pdb_00001a1g	Download File View File

DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	DSNR ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1H \| pdb_00001a1h	Download File View File

QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	QGSR ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1I \| pdb_00001a1i	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	RADR ZIF268 ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1J \| pdb_00001a1j	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (RADR ZIF268 ZINC FINGER PEPTIDE) (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1K \| pdb_00001a1k	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	RADR ZIF268 VARIANT (protein) DNA (5'-D(APGPCPGPTPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPTPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1L \| pdb_00001a1l	Download File View File

ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (ZIF268 ZINC FINGER PEPTIDE) (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1AAY \| pdb_00001aay	Download File View File

ZIF268 ZINC FINGER-DNA COMPLEX

Elrod-Erickson, M., Rould, M.A., Pabo, C.O.

(1996) Structure 4: 1171-1180

Released	1997-04-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (ZIF268 ZINC FINGER PEPTIDE) (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1APL \| pdb_00001apl	Download File View File

CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS

Wolberger, C., Vershon, A.K., Liu, B., Johnson, A.D., Pabo, C.O.

(1991) Cell 67: 517-528

Released	1993-10-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (MAT-ALPHA2 HOMEODOMAIN) (protein) DNA (5'-D(APCPAPTPGPTPAPAPTPTPCPAPTPTPTPAPC PAPCPGPC)-3') (nucleic acid) DNA (5'-D(TPGPCPGPTPGPTPAPAPAPTPGPAPAPTPTPA PCPAPTPG)-3') (nucleic acid)

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1CF7 \| pdb_00001cf7	Download File View File

STRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE TRANSCRIPTION FACTOR E2F-DP

Zheng, N., Fraenkel, E., Pabo, C.O., Pavletich, N.P.

(1999) Genes Dev 13: 666-674

Released	1999-04-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TRANSCRIPTION FACTOR DP-2) (protein) PROTEIN (TRANSCRIPTION FACTOR E2F-4) (protein) DNA (5'-D(APTPTPTPTPCPGPCPGPCPGPGPTPTPTPT)-3') (nucleic acid) DNA (5'-D(TPAPAPAPAPCPCPGPCPGPCPGPAPAPAPA)-3') (nucleic acid)

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1CKT \| pdb_00001ckt	Download File View File

CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED DNA DUPLEX

Ohndorf, U.-M., Rould, M.A., Pabo, C.O., Lippard, S.J.

(1999) Nature 399: 708-712

Released	1999-06-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	HIGH MOBILITY GROUP 1 PROTEIN (protein) DNA (5'-D(CPCP(5IU)PCPTPCPTPGPGPAPCPCPTPTPCPC)-3') (nucleic acid) DNA (5'-D(GPGPAPAPGPGPTPCPCPAPGPAPGPAPGPG)-3') (nucleic acid)
Unique Ligands	CPT

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1CQT \| pdb_00001cqt	Download File View File

CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT

Chasman, D.I., Cepek, K., Sharp, P.A., Pabo, C.O.

(1999) Genes Dev 13: 2650-2657

Released	1999-11-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	POU DOMAIN, CLASS 2, ASSOCIATING FACTOR 1 (protein) POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 (protein) DNA (5'-D(APCPCPTPTPAPTPTPTPGPCPAPTPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPAPTPGPCPAPAPAPTPAPAPGPG)-3') (nucleic acid)

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1DU0 \| pdb_00001du0	Download File View File

ENGRAILED HOMEODOMAIN Q50A VARIANT DNA COMPLEX

Grant, R.A., Rould, M.A., Klemm, J.D., Pabo, C.O.

(2000) Biochemistry 39: 8187-8192

Released	2000-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	ENGRAILED HOMEODOMAIN (protein) DNA (5'-D(APTPTPAPGPGPTPAPAPTPTPAPCPAPTPGPGPCPAPAPA)-3') (nucleic acid) DNA (5'-D(TPTPTPTPGPCPCPAPTPGPTPAPAPTPTPAPCPCPTPAPA)-3') (nucleic acid)

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1ENH \| pdb_00001enh	Download File View File

STRUCTURAL STUDIES OF THE ENGRAILED HOMEODOMAIN

Clarke, N.D., Kissinger, C.R., Desjarlais, J., Gilliland, G.L., Pabo, C.O.

(1994) Protein Sci 3: 1779-1787

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Drosophila melanogaster
Macromolecule	ENGRAILED HOMEODOMAIN (protein)

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1F2I \| pdb_00001f2i	Download File View File

COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA

Wang, B.S., Grant, R.A., Pabo, C.O.

(2001) Nat Struct Biol 8: 589-593

Released	2001-09-14
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12 (protein) 5'-D(APTPGPGPGPCPGPCPGPCPCPCPAPT)-3' (nucleic acid)
Unique Ligands	ZN

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1G2D \| pdb_00001g2d	Download File View File

STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2)

Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.

(2001) Structure 9: 717-723

Released	2001-09-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	TATA BOX ZINC FINGER PROTEIN (protein) 5'-D(GPAPCPGPCPTPAPTPAPAPAPAPGPGPAPG)-3' (nucleic acid) 5'-D(TPCPCPTPTPTPTPAPTPAPGPCPGPTPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1G2F \| pdb_00001g2f	Download File View File

STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6)

Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.

(2001) Structure 9: 717-723

Released	2001-09-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	TATA BOX ZINC FINGER PROTEIN (protein) 5'-D(GPAPCPGPCPTPAPTPAPAPAPAPGPGPAPG)-3' (nucleic acid) 5'-D(TPCPCPTPTPTPTPAPTPAPGPCPGPTPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1HDD \| pdb_00001hdd	Download File View File

CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONS

Kissinger, C.R., Liu, B., Martin-Blanco, E., Kornberg, T.B., Pabo, C.O.

(1990) Cell 63: 579-590

Released	1992-01-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Drosophila melanogaster synthetic construct
Macromolecule	PROTEIN (ENGRAILED HOMEODOMAIN) (protein) DNA (5'-D(APTPTPAPGPGPTPAPAPTPTPAPCPAPTPGPG PCPAPAPA)-3') (nucleic acid) DNA (5'-D(TPTPTPTPGPCPCPAPTPGPTPAPAPTPTPAPC PCPTPAPA)-3') (nucleic acid)

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1JK1 \| pdb_00001jk1	Download File View File

Zif268 D20A Mutant Bound to WT DNA Site

Miller, J.C., Pabo, C.O.

(2001) J Mol Biology 313: 309-315

Released	2001-10-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	ZIF268 (protein) 5'-D(APGPCPGPTPGPGPGPCPGPG)-3' (nucleic acid) 5'-D(TPCPCPGPCPCPCPAPCPGPC)-3' (nucleic acid)
Unique Ligands	ZN

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1JK2 \| pdb_00001jk2	Download File View File

Zif268 D20A mutant bound to the GCT DNA site

Miller, J.C., Pabo, C.O.

(2001) J Mol Biology 313: 309-315

Released	2001-10-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mus musculus
Macromolecule	ZIF268 (protein) 5'-D(APGPCPGPTPGPGPGPCPTPG)-3' (nucleic acid) 5'-D(TPCPAPGPCPCPCPAPCPGPC)-3' (nucleic acid)
Unique Ligands	ZN

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1LLM \| pdb_00001llm	Download File View File

Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA

Wolfe, S.A., Grant, R.A., Pabo, C.O.

(2003) Biochemistry 42: 13401-13409

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	chimera of Zif23-GCN4 (protein) 5'-D(TPCPCPCPAPCPGPCPGPTPGPGP*G)-3' (nucleic acid)
Unique Ligands	ZN

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1LMB \| pdb_00001lmb	Download File View File

REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX

Beamer, L.J., Pabo, C.O.

(1992) J Mol Biology 227: 177-196

Released	1991-11-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lambdavirus lambda
Macromolecule	PROTEIN (LAMBDA REPRESSOR) (protein) DNA (5'-D(APAPTPAPCPCPAPCPTPGPGPCPGPGPTPGPA PTPAPT)-3') (nucleic acid) DNA (5'-D(TPAPTPAPTPCPAPCPCPGPCPCPAPGPTPGPG PTPAPT)-3') (nucleic acid)

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1MDY \| pdb_00001mdy	Download File View File

CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION

Ma, P.C.M., Rould, M.A., Weintraub, H., Pabo, C.O.

(1994) Cell 77: 451-459

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (MYOD BHLH DOMAIN) (protein) DNA (5'-D(TPCPAPAPCPAPGPCPTPGPTPTPGPA)-3') (nucleic acid)

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1OCT \| pdb_00001oct	Download File View File

CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES

Klemm, J.D., Rould, M.A., Aurora, R., Herr, W., Pabo, C.O.

(1994) Cell 77: 21-32

Released	1994-08-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (OCT-1 POU DOMAIN) (protein) DNA (5'-D(APCPCPTPTPAPTPTPTPGPCPAPTPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPAPTPGPCPAPAPAPTPAPAPGPG)-3') (nucleic acid)

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1P47 \| pdb_00001p47	Download File View File

Crystal Structure of tandem Zif268 molecules complexed to DNA

Peisach, E., Pabo, C.O.

(2003) J Mol Biology 330: 1-7

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Early growth response protein 1 (protein) 5'-D(CPAPCPGPCPCPCPAPCPGPCPCPGPCPCPCPAPCPGPCPCPA)-3' (nucleic acid) 5'-D(GPTPGPGPCPGPTPGPGPGPCPGPGPCPGPTPGPGPGPCPGPT)-3' (nucleic acid)
Unique Ligands	ZN

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Structure Determination Methodology

Scientific Name of Source Organism

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Experimental Method

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Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1A1F | pdb_00001a1f

1A1G | pdb_00001a1g

1A1H | pdb_00001a1h

1A1I | pdb_00001a1i

1A1J | pdb_00001a1j

1A1K | pdb_00001a1k

1A1L | pdb_00001a1l

1AAY | pdb_00001aay

1APL | pdb_00001apl

1CF7 | pdb_00001cf7

1CKT | pdb_00001ckt

1CQT | pdb_00001cqt

1DU0 | pdb_00001du0

1ENH | pdb_00001enh

1F2I | pdb_00001f2i

1G2D | pdb_00001g2d

1G2F | pdb_00001g2f

1HDD | pdb_00001hdd

1JK1 | pdb_00001jk1

1JK2 | pdb_00001jk2

1LLM | pdb_00001llm

1LMB | pdb_00001lmb

1MDY | pdb_00001mdy

1OCT | pdb_00001oct

1P47 | pdb_00001p47