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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Prakash, B."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Mycobacterium tuberculosis (6)
	Mycobacterium tuberculosis H37Rv (3)
	Homo sapiens (2)
	Streptococcus thermophilus LMG 18311 (2)
	Aquifex aeolicus VF5 (1)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Mus musculus (1)
	Mycobacterium tuberculosis H37Ra (1)

Taxonomy

	Bacteria (14)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (7)
	2015 - 2019 (1)
	2020 - 2024 (3)

Enzyme Classification Name

	Transferases (10)
	Hydrolases (2)

Symmetry Type

	Asymmetric (7)
	Cyclic (10)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	All beta proteins (10)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 17 of 17 Structures

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1DG3 \| pdb_00001dg3	Download File View File

STRUCTURE OF HUMAN GUANYLATE BINDING PROTEIN-1 IN NUCLEOTIDE FREE FORM

Prakash, B., Praefcke, G.J.K., Renault, L., Wittinghofer, A., Herrmann, C.

(2000) Nature 403: 567-571

Released	2000-10-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN 1) (protein)

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1F5N \| pdb_00001f5n	Download File View File

HUMAN GUANYLATE BINDING PROTEIN-1 IN COMPLEX WITH THE GTP ANALOGUE, GMPPNP.

Prakash, B., Renault, L., Praefcke, G.J.K., Herrmann, C., Wittinghofer, A.

(2000) EMBO J 19: 4555-4564

Released	2000-09-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	INTERFERON-INDUCED GUANYLATE-BINDING PROTEIN 1 (protein)
Unique Ligands	GNP, MG

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1O7F \| pdb_00001o7f	Download File View File

CRYSTAL STRUCTURE OF THE REGULATORY DOMAIN OF EPAC2

Rehmann, H., Prakash, B., Wolf, E., Rueppel, A., De Rooij, J., Bos, J.L., Wittinghofer, A.

(2002) Nat Struct Biol 10: 26

Released	2002-11-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	CAMP-DEPENDENT RAP1 GUANINE-NUCLEOTIDE EXCHANGE FACTOR (protein)

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3DJ4 \| pdb_00003dj4	Download File View File

Crystal Structure of GlmU from Mycobacterium tuberculosis in complex with URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE.

Verma, S.K., Prakash, B.

(2009) J Mol Biology 386: 451-464

Released	2009-05-19
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Bifunctional protein glmU (protein)
Unique Ligands	CO, MG, UD1

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3DK5 \| pdb_00003dk5	Download File View File

Crystal Structure of Apo-GlmU from Mycobacterium tuberculosis

Verma, S.K., Prakash, B.

(2009) J Mol Biology 386: 451-464

Released	2009-05-19
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Bifunctional protein glmU (protein)
Unique Ligands	MG

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3FOQ \| pdb_00003foq	Download File View File

Crystal structure of N-acetylglucosamine-1-phosphate uridyltransferase (GlmU) from Mycobacterium tuberculosis in a cubic space group.

Verma, S.K., Prakash, B.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 435-439

Released	2009-06-09
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Bifunctional protein glmU (protein)
Unique Ligands	SO4

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3SPT \| pdb_00003spt	Download File View File

Crystal structure of GlmU from Mycobacterium tuberculosis in complex with ACETYL COENZYME A and URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE

Jagtap, P.A., Prakash, B.

To be published

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Bifunctional protein glmU (protein)
Unique Ligands	ACO, MG, UD1

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3ST8 \| pdb_00003st8	Download File View File

Crystal structure of GlmU from Mycobacterium tuberculosis in complex with COENZYME A, GLUCOSAMINE 1-PHOSPHATE and URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE

Jagtap, P.A., Prakash, B.

To be published

Released	2012-08-08
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Bifunctional protein glmU (protein)
Unique Ligands	COA, GP1, MG, UD1

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4G3P \| pdb_00004g3p	Download File View File

Crystal structure of GlmU from Mycobacterium tuberculosis Snapshot 3

Jagtap, P.A., Verma, S.K., Prakash, B.

To be published

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Bifunctional protein GlmU (protein)
Unique Ligands	CO, MG, POP, UD1

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4G3Q \| pdb_00004g3q	Download File View File

Crystal structure of GlmU from Mycobacterium tuberculosis Snapshot 4

Jagtap, P.A., Verma, S.K., Prakash, B.

To be published

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Bifunctional protein GlmU (protein)
Unique Ligands	CO, MG, POP, UD1

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4G3S \| pdb_00004g3s	Download File View File

Crystal structure of GlmU from Mycobacterium tuberculosis in complex with uridine-diphosphate-n-acetylglucosamine and pyrophosphate Snapshot 2

Jagtap, P.A., Verma, S.K., Prakash, B.

To be published

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Bifunctional protein GlmU (protein)
Unique Ligands	CO, GN1, MG, POP, UD1

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4G87 \| pdb_00004g87	Download File View File

Crystal structure of GLMU from Mycobacterium tuberculosis snapshot 1

Jagtap, P.A., Verma, S.K., Prakash, B.

(2013) J Mol Biology 425: 1745-1759

Released	2013-03-13
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Bifunctional protein GlmU (protein)
Unique Ligands	CO, MG, POP, UD1

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4K6R \| pdb_00004k6r	Download File View File

Crystal structure of GlmU in complex with ATP

Vithani, N., Prakash, B.

(2014) Acta Crystallogr F Struct Biol Commun 70: 703-708

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Bifunctional protein GlmU (protein)
Unique Ligands	ATP, CO, GN1, MG

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5X4B \| pdb_00005x4b	Download File View File

Crystal Structure of N-terminal G-domain of EngA from Bacillus subtilis

Singh, V., Prakash, B.

To be published

Released	2017-05-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	GTPase Der (protein)
Unique Ligands	GDP, K, MG, NA

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7BVU \| pdb_00007bvu	Download File View File

Crystal structure of S. thermophilus NFeoB E66A.E67A bound to GDP.AlF4-

Batra, S., Prakash, B.

To be published

Released	2021-04-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Ferrous iron transport protein B (protein)
Unique Ligands	ALF, CL, EDO, GDP, K, MG

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7BWV \| pdb_00007bwv	Download File View File

Crystal structure of S. thermophilus NFeoB E67A bound to GDP.AlF4-

Batra, S., Prakash, B.

To be published

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Ferrous iron transport protein B (protein)
Unique Ligands	ALF, CL, EDO, GDP, K, MG, PEG

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7C1O \| pdb_00007c1o	Download File View File

Crystal structure of Aquifex aeolicus Era Y63A bound to GDP.AlF4-

Batra, S., Prakash, B.

To be published

Released	2021-05-12
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	GTPase Era (protein)
Unique Ligands	ALF, GDP, K, MG, PEG, TRS

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DG3 | pdb_00001dg3

STRUCTURE OF HUMAN GUANYLATE BINDING PROTEIN-1 IN NUCLEOTIDE FREE FORM

1F5N | pdb_00001f5n

HUMAN GUANYLATE BINDING PROTEIN-1 IN COMPLEX WITH THE GTP ANALOGUE, GMPPNP.

1O7F | pdb_00001o7f

CRYSTAL STRUCTURE OF THE REGULATORY DOMAIN OF EPAC2

3DJ4 | pdb_00003dj4

Crystal Structure of GlmU from Mycobacterium tuberculosis in complex with URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE.

3DK5 | pdb_00003dk5

Crystal Structure of Apo-GlmU from Mycobacterium tuberculosis

3FOQ | pdb_00003foq

Crystal structure of N-acetylglucosamine-1-phosphate uridyltransferase (GlmU) from Mycobacterium tuberculosis in a cubic space group.

3SPT | pdb_00003spt

Crystal structure of GlmU from Mycobacterium tuberculosis in complex with ACETYL COENZYME A and URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE

3ST8 | pdb_00003st8

Crystal structure of GlmU from Mycobacterium tuberculosis in complex with COENZYME A, GLUCOSAMINE 1-PHOSPHATE and URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE

4G3P | pdb_00004g3p

Crystal structure of GlmU from Mycobacterium tuberculosis Snapshot 3

4G3Q | pdb_00004g3q

Crystal structure of GlmU from Mycobacterium tuberculosis Snapshot 4

4G3S | pdb_00004g3s

Crystal structure of GlmU from Mycobacterium tuberculosis in complex with uridine-diphosphate-n-acetylglucosamine and pyrophosphate Snapshot 2

4G87 | pdb_00004g87

Crystal structure of GLMU from Mycobacterium tuberculosis snapshot 1

4K6R | pdb_00004k6r

Crystal structure of GlmU in complex with ATP

5X4B | pdb_00005x4b

Crystal Structure of N-terminal G-domain of EngA from Bacillus subtilis

7BVU | pdb_00007bvu

Crystal structure of S. thermophilus NFeoB E66A.E67A bound to GDP.AlF4-

7BWV | pdb_00007bwv

Crystal structure of S. thermophilus NFeoB E67A bound to GDP.AlF4-

7C1O | pdb_00007c1o

Crystal structure of Aquifex aeolicus Era Y63A bound to GDP.AlF4-

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DG3 | pdb_00001dg3

1F5N | pdb_00001f5n

1O7F | pdb_00001o7f

3DJ4 | pdb_00003dj4

3DK5 | pdb_00003dk5

3FOQ | pdb_00003foq

3SPT | pdb_00003spt

3ST8 | pdb_00003st8

4G3P | pdb_00004g3p

4G3Q | pdb_00004g3q

4G3S | pdb_00004g3s

4G87 | pdb_00004g87

4K6R | pdb_00004k6r

5X4B | pdb_00005x4b

7BVU | pdb_00007bvu

7BWV | pdb_00007bwv

7C1O | pdb_00007c1o