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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Rypniewski, W.R."

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Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Sporosarcina pasteurii (9)
	Fusarium oxysporum (7)
	Bos taurus (6)
	Helicobacter pylori (3)
	Mus musculus (3)
	Rubrivivax gelatinosus (2)
	Escherichia coli (1)
	Gallus gallus (1)
	Manduca sexta (1)
	Nostoc sp. PCC 7120 = FACHB-418 (1)

More...

Taxonomy

	Eukaryota (18)
	Bacteria (17)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (37)

Polymer Entity Type

	Protein (35)
	RNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (6)
	1.0 - 1.5 (4)
	1.5 - 2.0 (16)
	2.0 - 2.5 (8)
	2.5 - 3.0 (3)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (2)
	1995 - 1999 (11)
	2000 - 2004 (13)
	2005 - 2009 (3)
	2010 - 2014 (7)

Enzyme Classification Name

	Hydrolases (14)
	Oxidoreductases (6)
	Transferases (4)

Symmetry Type

	Cyclic (24)
	Asymmetric (15)
	Dihedral (1)

SCOP Classification

	All beta proteins (21)
	Alpha and beta proteins (a+b) (12)
	Alpha and beta proteins (a/b) (7)
	All alpha proteins (5)

AllSelected

1 to 25 of 37 Structures

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132L \| pdb_0000132l	Download File View File

STRUCTURAL CONSEQUENCES OF REDUCTIVE METHYLATION OF LYSINE RESIDUES IN HEN EGG WHITE LYSOZYME: AN X-RAY ANALYSIS AT 1.8 ANGSTROMS RESOLUTION

Rayment, I., Rypniewski, W.R., Holden, H.M.

(1993) Biochemistry 32: 9851-9858

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	HEN EGG WHITE LYSOZYME (protein)

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1B7V \| pdb_00001b7v	Download File View File

Structure of the C-553 cytochrome from Bacillus pasteruii to 1.7 A resolution

Gonzalez, A., Benini, S., Rypniewski, W.R., Wilson, K.S., Ciurli, S.

(2000) Biochemistry 39: 13115-13126

Released	2000-03-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sporosarcina pasteurii
Macromolecule	PROTEIN (CYTOCHROME C-553) (protein)
Unique Ligands	HEC

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1B8Z \| pdb_00001b8z	Download File View File

HU FROM THERMOTOGA MARITIMA

Christodoulou, E., Rypniewski, W.R., Vorgias, C.E.

(1998) Acta Crystallogr D Biol Crystallogr 54: 1043-1045

Released	2000-02-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermotoga maritima
Macromolecule	PROTEIN (HISTONELIKE PROTEIN HU) (protein)

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1C75 \| pdb_00001c75	Download File View File

0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII

Benini, S., Ciurli, S., Rypniewski, W.R., Wilson, K.S.

(2000) Biochemistry 39: 13115-13126

Released	2000-03-22
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Sporosarcina pasteurii
Macromolecule	CYTOCHROME C-553 (protein)
Unique Ligands	HEC

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1FN8 \| pdb_00001fn8	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.81 Å
Organisms	Fusarium oxysporum
Macromolecule	GLY-ALA-ARG (protein) TRYPSIN (protein)
Unique Ligands	GOL, SO4

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1FXA \| pdb_00001fxa	Download File View File

CRYSTALLIZATION AND STRUCTURE DETERMINATION TO 2.5-ANGSTROMS RESOLUTION OF THE OXIDIZED [2FE-2S] FERREDOXIN ISOLATED FROM ANABAENA 7120

Rypniewski, W.R., Breiter, D.R., Benning, M.M., Wesenberg, G., Oh, B.-H., Markley, J.L., Rayment, I., Holden, H.M.

(1991) Biochemistry 30: 4126-4131

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	[2FE-2S] FERREDOXIN (protein)
Unique Ligands	FES

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1FY4 \| pdb_00001fy4	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.81 Å
Organisms	Fusarium oxysporum
Macromolecule	GLY-ALA-ARG (protein) TRYPSIN (protein)
Unique Ligands	GOL, SO4

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1FY5 \| pdb_00001fy5	Download File View File

Fusarium oxysporum trypsin at atomic resolution

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.81 Å
Organisms	Fusarium oxysporum
Macromolecule	GLY-ALA-LYS (protein) TRYPSIN (protein)
Unique Ligands	GOL, SO4

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1GDN \| pdb_00001gdn	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.81 Å
Organisms	Fusarium oxysporum
Macromolecule	GLY-ALA-LYS (protein) TRYPSIN (protein)
Unique Ligands	GOL, SO4

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1GDQ \| pdb_00001gdq	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.93 Å
Organisms	Fusarium oxysporum
Macromolecule	GLY-ALA-ARG (protein) TRYPSIN (protein)
Unique Ligands	GOL, SO4

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1GDU \| pdb_00001gdu	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.07 Å
Organisms	Fusarium oxysporum
Macromolecule	GLY-ALA-ARG (protein) TRYPSIN (protein)
Unique Ligands	SO4

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1I7J \| pdb_00001i7j	Download File View File

CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.19 A RESOLUTION. 2-METHYL-2,4-PENTANEDIOL AND MAGNESIUM BINDING.

Adamiak, D.A., Rypniewski, W.R., Milecki, J., Adamiak, R.W.

(2001) Nucleic Acids Res 29: 4144-4153

Released	2001-09-21
Method	X-RAY DIFFRACTION 1.19 Å
Macromolecule	5'-R((OMC)P(OMG)P(OMC)P(OMG)P(OMC)P(OMG))-3' (nucleic acid)
Unique Ligands	MG, MPD

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1IE7 \| pdb_00001ie7	Download File View File

PHOSPHATE INHIBITED BACILLUS PASTEURII UREASE CRYSTAL STRUCTURE

Benini, S., Rypniewski, W.R., Wilson, K.S., Ciurli, S., Mangani, S.

(2001) J Biol Inorg Chem 6: 778-790

Released	2001-04-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Sporosarcina pasteurii
Macromolecule	UREASE ALPHA SUBUNIT (protein) UREASE BETA SUBUNIT (protein) UREASE GAMMA SUBUNIT (protein)
Unique Ligands	NI, PO4

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1S3T \| pdb_00001s3t	Download File View File

BORATE INHIBITED BACILLUS PASTEURII UREASE CRYSTAL STRUCTURE

Benini, S., Rypniewski, W.R., Wilson, K.S., Ciurli, S., Mangani, S.

(2004) J Am Chem Soc 126: 3714-3715

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sporosarcina pasteurii
Macromolecule	Urease alpha subunit (protein) Urease beta subunit (protein) Urease gamma subunit (protein)
Unique Ligands	BO3, NI, SO4

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1SXA \| pdb_00001sxa	Download File View File

CRYSTAL STRUCTURE OF REDUCED BOVINE ERYTHROCYTE SUPEROXIDE DISMUTASE AT 1.9 ANGSTROMS RESOLUTION

Rypniewski, W.R., Mangani, S., Bruni, B., Orioli, P., Casati, M., Wilson, K.S.

(1995) J Mol Biology 251: 282-296

Released	1995-06-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CU, ZN

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1SXB \| pdb_00001sxb	Download File View File

CRYSTAL STRUCTURE OF REDUCED BOVINE ERYTHROCYTE SUPEROXIDE DISMUTASE AT 1.9 ANGSTROMS RESOLUTION

Rypniewski, W.R., Mangani, S., Bruni, B., Orioli, P., Casati, M., Wilson, K.S.

(1995) J Mol Biology 251: 282-296

Released	1995-06-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CU, ZN

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1SXC \| pdb_00001sxc	Download File View File

CRYSTAL STRUCTURE OF REDUCED BOVINE ERYTHROCYTE SUPEROXIDE DISMUTASE AT 1.9 ANGSTROMS RESOLUTION

Rypniewski, W.R., Mangani, S., Bruni, B., Orioli, P., Casati, M., Wilson, K.S.

(1995) J Mol Biology 251: 282-296

Released	1995-06-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CU, ZN

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1SXN \| pdb_00001sxn	Download File View File

REDUCED BOVINE SUPEROXIDE DISMUTASE AT PH 5.0

Ferraroni, M., Rypniewski, W.R., Bruni, B., Orioli, P., Wilson, K.S., Mangani, S.

(1998) J Biol Inorg Chem 3: 411-422

Released	1998-03-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	CU, ZN SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CA, CU, ZN

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1SXS \| pdb_00001sxs	Download File View File

Reduced bovine superoxide dismutase at pH 5.0 complexed with thiocyanate

Ferraroni, M., Rypniewski, W.R., Bruni, B., Orioli, P., Mangani, S.

(1998) J Biol Inorg Chem 3: 411-422

Released	1998-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (CU-ZN SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	CA, CU, SCN, ZN

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1SXZ \| pdb_00001sxz	Download File View File

Reduced bovine superoxide dismutase at pH 5.0 complexed with azide

Ferraroni, M., Rypniewski, W.R., Bruni, B., Orioli, P., Wilson, K.S., Mangani, S.

(1998) J Biol Inorg Chem 3: 411-422

Released	1998-09-30
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (CU-ZN SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	AZI, CA, CU, ZN