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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sapra, R."

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Lama glama (7)
	Lotus japonicus (6)
	Medicago truncatula (4)
	Homo sapiens (3)
	Schizosaccharomyces pombe (3)
	Escherichia coli K-12 (2)
	Naja kaouthia (2)
	Thermothelomyces thermophilus (2)
	Thermus thermophilus (2)
	Thermus thermophilus HB8 (2)

More...

Taxonomy

	Eukaryota (23)
	Bacteria (3)

Experimental Method

X-RAY DIFFRACTION (25)

Polymer Entity Type

	Protein (25)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (5)
	2.0 - 2.5 (4)
	2.5 - 3.0 (7)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (6)
	2015 - 2019 (7)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (4)

Symmetry Type

	Asymmetric (24)
	Cyclic (2)

SCOP Classification

	All beta proteins (6)
	Artifacts (6)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 25 Structures

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2P51 \| pdb_00002p51	Download File View File

Crystal structure of the S. pombe Pop2p deadenylation subunit

Thyssen Jonstrup, A., Andersen, K.R., Van, L.B., Brodersen, D.E.

(2007) Nucleic Acids Res 35: 3153-3164

Released	2007-05-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	SPCC18.06c protein (protein)
Unique Ligands	MG

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3G0Z \| pdb_00003g0z	Download File View File

Structure of S. pombe Pop2p - Zn2+ and Mn2+ bound form

Andersen, K.R., Jonstrup, A.T., Van, L.B., Brodersen, D.E.

(2009) RNA 15: 850-861

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.004 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	CCR4-Not complex subunit Caf1 (protein)
Unique Ligands	MN, ZN

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3G10 \| pdb_00003g10	Download File View File

Structure of S. pombe Pop2p - Mg2+ and Mn2+ bound form

Andersen, K.R., Jonstrup, A.T., Van, L.B., Brodersen, D.E.

(2009) RNA 15: 850-861

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.597 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	CCR4-Not complex subunit Caf1 (protein)
Unique Ligands	MG, MN

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3PRX \| pdb_00003prx	Download File View File

Structure of Complement C5 in Complex with CVF and SSL7

Laursen, N.S., Andersen, G.R., Sottrup-Jensen, L., Andersen, K.R., Spillner, E., Braren, I.

(2011) EMBO J 30: 606-616

Released	2011-01-19
Method	X-RAY DIFFRACTION 4.3 Å
Organisms	Homo sapiens Naja kaouthia Staphylococcus aureus
Macromolecule	Cobra venom factor (protein) Complement C5 (protein) Superantigen-like protein 7 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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3PVM \| pdb_00003pvm	Download File View File

Structure of Complement C5 in Complex with CVF

Laursen, N.S., Andersen, K.R., Braren, I., Sottrup-Jensen, L., Spillner, E., Andersen, G.R.

(2011) EMBO J 30: 606-616

Released	2011-01-19
Method	X-RAY DIFFRACTION 4.3 Å
Organisms	Homo sapiens Naja kaouthia
Macromolecule	Cobra venom factor (protein) Complement C5 (protein)
Unique Ligands	NAG

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4KF7 \| pdb_00004kf7	Download File View File

Nup188(aa1-1160) from Myceliophthora thermophila

Schwartz, T.U., Andersen, K.R.

(2013) Elife 2: e00745-e00745

Released	2013-06-19
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Thermothelomyces thermophilus
Macromolecule	Nup188 (protein)

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4KF8 \| pdb_00004kf8	Download File View File

Nup188(aa1445-1827) from Myceliophthora thermophila

Schwartz, T.U., Andersen, K.R.

(2013) Elife 2: e00745-e00745

Released	2013-06-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermothelomyces thermophilus
Macromolecule	Nup188 (protein)

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4V7J \| pdb_00004v7j	Download File View File

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Neubauer, C., Gao, Y.-G., Andersen, K.R., Dunham, C.M., Kelley, A.C., Hentschel, J., Gerdes, K., Ramakrishnan, V., Brodersen, D.E.

(2009) Cell 139: 1084-1095

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli K-12 Thermus thermophilus Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	MG, ZN

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4V7K \| pdb_00004v7k	Download File View File

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Neubauer, C., Gao, Y.-G., Andersen, K.R., Dunham, C.M., Kelley, A.C., Hentschel, J., Gerdes, K., Ramakrishnan, V., Brodersen, D.E.

(2009) Cell 139: 1084-1095

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli K-12 Thermus thermophilus Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	MG, ZN

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5LOI \| pdb_00005loi	Download File View File

Crystal structure of Myceliophthora thermophila Rad26 (residues 373-841)

Andersen, K.R.

(2017) J Biological Chem 292: 8149-8157

Released	2017-03-29
Method	X-RAY DIFFRACTION 3.153 Å
Organisms	Thermothelomyces thermophilus ATCC 42464
Macromolecule	Rad26 (protein)

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5LS2 \| pdb_00005ls2	Download File View File

Receptor mediated chitin perception in legumes is functionally seperable from Nod factor perception

Bozsoki, Z., Cheng, J., Feng, F., Gysel, K., Andersen, K.R., Oldroyd, G., Blaise, M., Radutoiu, S., Stougaard, J.

(2017) Proc Natl Acad Sci U S A 114: E8118-E8127

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lotus japonicus
Macromolecule	LysM type receptor kinase (protein)
Unique Ligands	SO4
Unique branched monosaccharides	NAG

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5NLU \| pdb_00005nlu	Download File View File

Structure of Nb36 crystal form 1

Hansen, S.B., Andersen, K.R., Laursen, N.S., Andersen, G.R.

(2017) Acta Crystallogr D Struct Biol 73: 804-813

Released	2017-05-31
Method	X-RAY DIFFRACTION 1.193 Å
Organisms	Lama glama
Macromolecule	single domain llama antibody Nb36 (protein)
Unique Ligands	SO4

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5NLW \| pdb_00005nlw	Download File View File

Structure of Nb36 crystal form 2

Hansen, S.B., Andersen, K.R., Laursen, N.S., Andersen, G.R.

(2017) Acta Crystallogr D Struct Biol 73: 804-813

Released	2017-05-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lama glama
Macromolecule	nanobody Nb36 (protein)
Unique Ligands	SO4

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5NM0 \| pdb_00005nm0	Download File View File

Nb36 Ser85Cys with Hg, crystal form 1

Hansen, S.B., Andersen, K.R., Laursen, N.S., Andersen, G.R.

(2017) Acta Crystallogr D Struct Biol 73: 804-813

Released	2017-06-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lama glama
Macromolecule	Nb36 (protein)
Unique Ligands	HG

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5NML \| pdb_00005nml	Download File View File

Nb36 Ser85Cys with Hg bound

Hansen, S.B., Andersen, K.R., Laursen, N.S., Andersen, G.R.

(2017) Acta Crystallogr D Struct Biol 73: 804-813

Released	2017-06-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lama glama
Macromolecule	Nanobody Nb36 Ser85Cys (protein)
Unique Ligands	EDO, HG

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6EHG \| pdb_00006ehg	Download File View File

complement component C3b in complex with a nanobody

Jensen, R.K., Andersen, K.R., Gadeberg, T.A.F., Laursen, N.S., Andersen, G.R.

(2018) J Biological Chem 293: 6269-6281

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Complement C3 (protein) hC3Nb1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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6QUP \| pdb_00006qup	Download File View File

Structural signatures in EPR3 define a unique class of plant carbohydrate receptors

Wong, J.E., Gysel, K., Birkefeldt, T.G., Vinther, M., Muszynski, A., Azadi, P., Laursen, N.S., Sullivan, J.T., Ronson, C.W., Stougaard, J., Andersen, K.R.

(2020) Nat Commun 11: 3797-3797

Released	2020-08-05
Method	X-RAY DIFFRACTION 1.871 Å
Organisms	Lama glama Lotus japonicus
Macromolecule	LysM type receptor kinase (protein) Nanobody 186 (Nb186) (protein)
Unique Ligands	EDO, IPA, NAG

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6XWE \| pdb_00006xwe	Download File View File

Crystal structure of LYK3 ectodomain

Gysel, K., Blaise, M., Andersen, K.R.

(2020) Science 369: 663-670

Released	2020-08-12
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Medicago truncatula
Macromolecule	LysM domain receptor-like kinase 3 (protein)
Unique Ligands	CCN
Unique branched monosaccharides	BMA, FUC, NAG

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7AU7 \| pdb_00007au7	Download File View File

Crystal structure of Nod Factor Perception ectodomain

Gysel, K., Blaise, M., Andersen, K.R.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.547 Å
Organisms	Medicago truncatula
Macromolecule	Serine/threonine receptor-like kinase NFP (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7BAX \| pdb_00007bax	Download File View File

Crystal structure of LYS11 ectodomain

Laursen, M., Cheng, J., Gysel, K., Blaise, M., Andersen, K.R.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Lotus japonicus
Macromolecule	LysM type receptor kinase (protein)
Unique Ligands	NAG

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8PEH \| pdb_00008peh	Download File View File

Crystal structure of Lotus japonicus SYMRK kinase domain D738N

Noergaard, M.M.M., Gysel, K., Hansen, S.B., Andersen, K.R.

(2024) Proc Natl Acad Sci U S A 121: e2311522121-e2311522121

Released	2024-02-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Lotus japonicus
Macromolecule	Receptor-like kinase SYMRK (protein)
Unique Ligands	EDO, SO4

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8PS7 \| pdb_00008ps7	Download File View File

Crystal structure of Medicago truncatula LYR4 kinase domain

Simonsen, B., Gysel, K., Laursen, M., Andersen, K.R.

(2025) New Phytol

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Medicago truncatula
Macromolecule	LysM-domain receptor-like kinase (protein)
Unique Ligands	ANP, GOL, SO4

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8S79 \| pdb_00008s79	Download File View File

Lotus japonicus NFR5 intracellular domain in complex with Nanobody 200

Hansen, S.B., Gysel, K., Andersen, K.R.

(2024) Proc Natl Acad Sci U S A 121: e2405671121-e2405671121

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Lama glama Lotus japonicus
Macromolecule	Nanobody 200 (protein) Nod-factor receptor 5 (protein)
Unique Ligands	ACT, BME, PEG

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9GB9 \| pdb_00009gb9	Download File View File

Crystal structure of Lotus japonicus CERK6 kinase domain D460N

Simonsen, B.W., Gysel, K., Andersen, K.R.

(2024) bioRxiv

Released	2024-11-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Lotus japonicus
Macromolecule	LysM type receptor kinase (protein)
Unique Ligands	EDO, IMD

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9GFZ \| pdb_00009gfz	Download File View File

Crystal structure of Medicago Truncatula LYK3 kinase domain D459N

Simonsen, B., Gysel, K., Andersen, C.G., Andersen, K.R.

(2024) bioRxiv

Released	2024-11-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Medicago truncatula
Macromolecule	LysM domain receptor-like kinase 3 (protein)
Unique Ligands	ANP

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2P51 | pdb_00002p51

3G0Z | pdb_00003g0z

3G10 | pdb_00003g10

3PRX | pdb_00003prx

3PVM | pdb_00003pvm

4KF7 | pdb_00004kf7

4KF8 | pdb_00004kf8

4V7J | pdb_00004v7j

4V7K | pdb_00004v7k

5LOI | pdb_00005loi

5LS2 | pdb_00005ls2

5NLU | pdb_00005nlu

5NLW | pdb_00005nlw

5NM0 | pdb_00005nm0

5NML | pdb_00005nml

6EHG | pdb_00006ehg

6QUP | pdb_00006qup

6XWE | pdb_00006xwe

7AU7 | pdb_00007au7

7BAX | pdb_00007bax

8PEH | pdb_00008peh

8PS7 | pdb_00008ps7

8S79 | pdb_00008s79

9GB9 | pdb_00009gb9

9GFZ | pdb_00009gfz