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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Shi, N."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Mus musculus (8)
	Bacillus cereus (6)
	Homo sapiens (3)
	Methanothermobacter thermautotrophicus (3)
	Methanothermobacter thermautotrophicus str. Delta H (2)
	Saccharomyces cerevisiae (2)
	Aequorea victoria (1)
	Bacillus cereus m1550 (1)
	Saccharomyces cerevisiae S288C (1)
	Vibrio parahaemolyticus (1)

More...

Taxonomy

	Eukaryota (15)
	Bacteria (8)
	Archaea (5)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (27)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (9)
	2.5 - 3.0 (9)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (9)
	2010 - 2014 (6)
	2015 - 2019 (7)
	2020 - 2024 (1)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (2)
	Hydrolases (2)

Membrane Protein Annotation

	MemProtMD (8)
	PDBTM (8)
	mpstruc (7)
	OPM (1)

Symmetry Type

	Cyclic (15)
	Asymmetric (9)
	Dihedral (3)

SCOP Classification

	Artifacts (6)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (3)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 27 Structures

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1J0W \| pdb_00001j0w	Download File View File

Crystal Structure Analysis of the Dok-5 PTB Domain

Shi, N., Ding, Y., Qiang, B.Q., Yuan, J.G., Rao, Z.H.

To be published

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	downstream of tyrosine kinase 5 (protein)

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1P5T \| pdb_00001p5t	Download File View File

Crystal Structure of Dok1 PTB Domain

Shi, N., Ye, S., Liu, Y., Zhou, W., Ding, Y., Lou, Z., Qiang, B., Yuan, J., Rao, Z.

(2004) J Biological Chem 279: 4962-4969

Released	2004-02-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	Docking protein 1 (protein)

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1UEF \| pdb_00001uef	Download File View File

Crystal Structure of Dok1 PTB Domain Complex

Shi, N., Ye, S., Liu, Y., Zhou, W., Ding, Y., Lou, Z., Qiang, B., Yan, J., Rao, Z.

(2004) J Biological Chem 279: 4962-4969

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	13-mer peptide from Proto-oncogene tyrosine-protein kinase receptor ret (protein) Docking protein 1 (protein)

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2AEF \| pdb_00002aef	Download File View File

Crystal Structures of the MthK RCK Domain in Ca2+ bound form

Dong, J., Shi, N., Berke, I., Chen, L., Jiang, Y.

(2005) J Biological Chem 280: 41716-41724

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Calcium-gated potassium channel mthK (protein)
Unique Ligands	CA

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2AEJ \| pdb_00002aej	Download File View File

Crystal Structures of the MthK RCK Domain in no Ca2+ bound form

Dong, J., Shi, N., Berke, I., Chen, L., Jiang, Y.

(2005) J Biological Chem 280: 41716-41724

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Calcium-gated potassium channel mthK (protein)

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2AEM \| pdb_00002aem	Download File View File

Crystal Structures of the MthK RCK Domain

Dong, J., Shi, N., Berke, I., Chen, L., Jiang, Y.

(2005) J Biological Chem 280: 41716-41724

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Calcium-gated potassium channel mthK (protein)

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2AHY \| pdb_00002ahy	Download File View File

Na+ complex of the NaK Channel

Shi, N., Ye, S., Alam, A., Chen, L., Jiang, Y.

(2006) Nature 440: 570-574

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein (protein)
Unique Ligands	CA, NA

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2AHZ \| pdb_00002ahz	Download File View File

K+ complex of the NaK Channel

Shi, N., Ye, S., Alam, A., Chen, L., Jiang, Y.

(2006) Nature 440: 570-574

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein (protein)
Unique Ligands	CA, K

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2Q67 \| pdb_00002q67	Download File View File

Crystal Structure of Nak channel D66A mutant

Alam, A., Shi, N., Jiang, Y.

(2007) Proc Natl Acad Sci U S A 104: 15334-15339

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein (protein)
Unique Ligands	CA, NA

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2Q68 \| pdb_00002q68	Download File View File

Crystal Structure of Nak channel D66A, S70E double mutants

Alam, A., Shi, N., Jiang, Y.

(2007) Proc Natl Acad Sci U S A 104: 15334-15339

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein (protein)
Unique Ligands	CA, NA

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2Q69 \| pdb_00002q69	Download File View File

Crystal Structure of Nak channel D66N mutant

Alam, A., Shi, N., Jiang, Y.

(2007) Proc Natl Acad Sci U S A 104: 15334-15339

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein (protein)
Unique Ligands	CA, NA

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2Q6A \| pdb_00002q6a	Download File View File

Crystal Structure of Nak channel D66E mutant

Alam, A., Shi, N., Jiang, Y.

(2007) Proc Natl Acad Sci U S A 104: 15334-15339

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein (protein)
Unique Ligands	CA, NA

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3ONN \| pdb_00003onn	Download File View File

Crystal structure of 5'-nucleotidase SDT1 from saccharomyces cerevisiae

Teng, M.K., Niu, L.W., Shi, N.

To be published

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein SSM1 (protein)
Unique Ligands	ACT, GOL, IOD, MG, PO4

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3OPX \| pdb_00003opx	Download File View File

Crystal structure of pyrimidine 5 -nucleotidase SDT1 from Saccharomyces cerevisiae complexed with uridine 5'-monophosphate

Teng, M.K., Niu, L.W., Shi, N.

To be published

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein SSM1 (protein)
Unique Ligands	MG, U5P

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3OUF \| pdb_00003ouf	Download File View File

Structure of a K+ selective NaK mutant

Derebe, M.G., Sauer, D.B., Zeng, W., Alam, A., Shi, N., Jiang, Y.

(2011) Proc Natl Acad Sci U S A 108: 598-602

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Bacillus cereus m1550
Macromolecule	Potassium channel protein (protein)
Unique Ligands	K, MPD

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3OUS \| pdb_00003ous	Download File View File

MthK channel pore T59A mutant

Derebe, M.G., Sauer, D.B., Zeng, W., Alam, A., Shi, N., Jiang, Y.

(2011) Proc Natl Acad Sci U S A 108: 598-602

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Calcium-gated potassium channel mthK (protein)
Unique Ligands	K

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3R65 \| pdb_00003r65	Download File View File

MthK channel pore E92Q mutant

Shi, N., Zeng, W., Ye, S., Li, Y., Jiang, Y.

(2011) J Mol Biology 411: 27-35

Released	2012-02-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Calcium-gated potassium channel mthK (protein)
Unique Ligands	K

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4DM4 \| pdb_00004dm4	Download File View File

The conserved domain of yeast Cdc73

Chen, H., Shi, N., Gao, Y., Li, X., Niu, L., Teng, M.

(2012) Acta Crystallogr D Biol Crystallogr 68: 953-959

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Cell division control protein 73 (protein)

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4REY \| pdb_00004rey	Download File View File

Crystal Structure of the GRASP65-GM130 C-terminal peptide complex

Shi, N., Hu, F., Li, B.

(2015) J Biological Chem 290: 26373-26382

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Golgi reassembly-stacking protein 1 (protein) Golgin subfamily A member 2 (protein)
Unique Ligands	SO4

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4XGY \| pdb_00004xgy	Download File View File

GFP based antibody (fluorobody)

Shi, N., Chen, Y.G., Wang, S.H.

(2015) Acta Crystallogr F Struct Biol Commun 71: 913-918

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.494 Å
Organisms	Aequorea victoria Vibrio parahaemolyticus synthetic construct
Macromolecule	Green fluorescent protein, mAb LCDR3, Green fluorescent protein (protein)
Unique Ligands	PE5

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5GMI \| pdb_00005gmi	Download File View File

Crystal Structure of GRASP55 GRASP domain in complex with JAM-C C-terminus

Shi, N., Shi, X., Morelli, X., Betzi, S., Huang, X.

(2017) PLoS Genet 13: e1006803-e1006803

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Mus musculus
Macromolecule	Golgi reassembly-stacking protein 2 (protein) Junctional adhesion molecule C (protein)

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5GMJ \| pdb_00005gmj	Download File View File

Crystal Structure of GRASP55 GRASP domain in complex with JAM-B C-terminus

Shi, N., Shi, X., Morelli, X., Betzi, S., Huang, X.

(2017) PLoS Genet 13: e1006803-e1006803

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.986 Å
Organisms	Mus musculus
Macromolecule	Golgi reassembly-stacking protein 2 (protein) Junctional adhesion molecule B (protein)

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5GML \| pdb_00005gml	Download File View File

Crystal Structure of GRASP Domain of GRASP55 with N terminal extra residues

Shi, N., Shi, X., Morelli, X., Betzi, S., Huang, X.

To be published

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.546 Å
Organisms	Mus musculus
Macromolecule	Golgi reassembly-stacking protein 2 (protein)

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5H3J \| pdb_00005h3j	Download File View File

Crystal structure of Grasp domain of Grasp55 complexed with the Golgin45 C-terminus

Shi, N., Zhao, J., Li, B.

(2017) J Biological Chem 292: 2956-2965

Released	2017-01-11
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Mus musculus
Macromolecule	Golgi reassembly-stacking protein 2 (protein) Golgin-45 (protein)
Unique Ligands	ZN