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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Spraggon, G."

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Search Summary

This query matches 100 Structures.

Refinements

Structure Determination Methodology

experimental (100)

Scientific Name of Source Organism

	Homo sapiens (50)
	synthetic construct (11)
	Methanocaldococcus jannaschii (4)
	Mycobacterium tuberculosis (4)
	Streptococcus pneumoniae TIGR4 (4)
	Corynebacterium diphtheriae (2)
	Neisseria meningitidis (2)
	Nocardia farcinica (2)
	Pectobacterium carotovorum (2)
	Serratia marcescens (2)

More...

Taxonomy

	Eukaryota (52)
	Bacteria (36)
	other sequences (11)
	Archaea (4)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (100)

Polymer Entity Type

	Protein (93)
	RNA (7)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (42)
	2.0 - 2.5 (27)
	2.5 - 3.0 (18)
	3.0 - 3.5 (3)
	3.5 - 4.0 (3)
	> 4.5 (1)

Release Date

	1995 - 1999 (8)
	2000 - 2004 (15)
	2005 - 2009 (27)
	2010 - 2014 (22)
	2015 - 2019 (11)
	2020 - 2024 (17)

Enzyme Classification Name

	Transferases (22)
	Hydrolases (27)
	Oxidoreductases (5)
	Lyases (3)
	Ligases (4)
	Isomerases (1)

Symmetry Type

	Asymmetric (72)
	Cyclic (25)
	Dihedral (5)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (37)
	Coiled coil proteins (7)
	All beta proteins (13)
	Alpha and beta proteins (a/b) (12)
	Artifacts (8)
	All alpha proteins (2)
	Membrane and cell surface proteins and peptides (2)
	Small proteins (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 100 Structures

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1FZA \| pdb_00001fza	Download File View File

CRYSTAL STRUCTURE OF FIBRINOGEN FRAGMENT D

Spraggon, G., Everse, S.J., Doolittle, R.F.

(1997) Nature 389: 455-462

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	FIBRINOGEN (protein)
Unique Ligands	CA, NAG

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1FZB \| pdb_00001fzb	Download File View File

CRYSTAL STRUCTURE OF CROSSLINKED FRAGMENT D

Spraggon, G., Everse, S.J., Doolittle, R.F.

(1997) Nature 389: 455-462

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	FIBRINOGEN (protein) PEPTIDE LIGAND GPRG (protein)
Unique Ligands	CA, NAG

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1FZC \| pdb_00001fzc	Download File View File

CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN WITH TWO DIFFERENT BOUND LIGANDS

Everse, S.J., Spraggon, G., Veerapandian, L., Riley, M., Doolittle, R.F.

(1998) Biochemistry 37: 8637-8642

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	FIBRIN (protein)
Unique Ligands	CA, MAN, NAG
Unique branched monosaccharides	NAG

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1FZD \| pdb_00001fzd	Download File View File

STRUCTURE OF RECOMBINANT ALPHAEC DOMAIN FROM HUMAN FIBRINOGEN-420

Spraggon, G., Applegate, D., Everse, S.J., Zhang, J.-Z., Veerapandian, L., Redman, C., Doolittle, R.F., Grieninger, G.

(1998) Proc Natl Acad Sci U S A 95: 9099-9104

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	FIBRINOGEN-420 (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	MAN, NAG, NDG

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1FZE \| pdb_00001fze	Download File View File

CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN

Everse, S.J., Spraggon, G., Veerapandian, L., Doolittle, R.F.

(1999) Biochemistry 38: 2941-2946

Released	1999-06-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	FIBRINOGEN (protein)
Unique Ligands	CA, NAG

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1FZF \| pdb_00001fzf	Download File View File

CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN WITH THE PEPTIDE LIGAND GLY-HIS-ARG-PRO-AMIDE

Everse, S.J., Spraggon, G., Veerapandian, L., Doolittle, R.F.

(1999) Biochemistry 38: 2941-2946

Released	1999-06-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	FIBRINOGEN (protein)
Unique Ligands	CA, NAG

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1FZG \| pdb_00001fzg	Download File View File

CRYSTAL STRUCTURE OF FRAGMENT D FROM HUMAN FIBRINOGEN WITH THE PEPTIDE LIGAND GLY-HIS-ARG-PRO-AMIDE

Everse, S.J., Spraggon, G., Veerapandian, L., Doolittle, R.F.

(1999) Biochemistry 38: 2941-2946

Released	1999-06-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	FIBRINOGEN (protein)
Unique Ligands	CA
Unique branched monosaccharides	NAG

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1I7Q \| pdb_00001i7q	Download File View File

ANTHRANILATE SYNTHASE FROM S. MARCESCENS

Spraggon, G., Kim, C., Nguyen-Huu, X., Yee, M.-C., Yanofsky, C., Mills, S.E.

(2001) Proc Natl Acad Sci U S A 98: 6021-6026

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Serratia marcescens
Macromolecule	ANTHRANILATE SYNTHASE (protein) TRPG (protein)
Unique Ligands	BEZ, GLU, MG, PYR

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1I7S \| pdb_00001i7s	Download File View File

ANTHRANILATE SYNTHASE FROM SERRATIA MARCESCENS IN COMPLEX WITH ITS END PRODUCT INHIBITOR L-TRYPTOPHAN

Spraggon, G., Kim, C., Nguyen-Huu, X., Yee, M.-C., Yanofsky, C., Mills, S.E.

(2001) Proc Natl Acad Sci U S A 98: 6021-6026

Released	2001-05-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Serratia marcescens
Macromolecule	ANTHRANILATE SYNTHASE (protein) TRPG (protein)
Unique Ligands	TRP

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1J7J \| pdb_00001j7j	Download File View File

Crystal Structure of the HPRT from Salmonella typhimurium

Lee, C.C., Focia, P.J., Spraggon, G., Eakin, A.E.

To be published

Released	2003-07-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	hypoxanthine phosphoribosyltransferase (protein)
Unique Ligands	MG

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1JES \| pdb_00001jes	Download File View File

Crystal Structure of a Copper-Mediated Base Pair in DNA

Atwell, S., Meggers, E., Spraggon, G., Schultz, P.G.

(2001) J Am Chem Soc 123: 12364-12367

Released	2001-11-23
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	5'-D(CPGPCPGP(DPY)PAPTP(DRP)PCPGPCPG)-3' (nucleic acid)
Unique Ligands	CU

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1KEX \| pdb_00001kex	Download File View File

Crystal Structure of the b1 Domain of Human Neuropilin-1

Lee, C.C., Kreusch, A., McMullan, D., Ng, K., Spraggon, G.

(2003) Structure 11: 99-108

Released	2003-01-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Neuropilin-1 (protein)

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1KGZ \| pdb_00001kgz	Download File View File

Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase from Erwinia carotovora (current name, Pectobacterium carotovorum)

Kim, C., Xuong, N.-H., Edwards, S., Madhusudan, Yee, M.-C., Spraggon, G., Mills, S.E.

(2002) FEBS Lett 523: 239-246

Released	2002-10-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pectobacterium carotovorum
Macromolecule	Anthranilate phosphoribosyltransferase (protein)
Unique Ligands	HG, MN, PRP

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1KHD \| pdb_00001khd	Download File View File

Crystal Structure Analysis of the anthranilate phosphoribosyltransferase from Erwinia carotovora at 1.9 resolution (current name, Pectobacterium carotovorum)

Kim, C., Xuong, N.-H., Edwards, S., Madhusudan, Yee, M.-C., Spraggon, G., Mills, S.E.

(2002) FEBS Lett 523: 239-246

Released	2002-10-23
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Pectobacterium carotovorum
Macromolecule	Anthranilate phosphoribosyltransferase (protein)

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1LM4 \| pdb_00001lm4	Download File View File

Structure of Peptide Deformylase from Staphylococcus aureus at 1.45 A

Kreusch, A., Spraggon, G., Lee, C.C., Klock, H., McMullan, D., Ng, K., Shin, T., Vincent, J., Warner, I., Ericson, C., Lesley, S.A.

(2003) J Mol Biology 330: 309-321

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Staphylococcus aureus
Macromolecule	peptide deformylase PDF1 (protein)
Unique Ligands	FE, GOL

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1LM6 \| pdb_00001lm6	Download File View File

Crystal Structure of Peptide Deformylase from Streptococcus pneumoniae

Kreusch, A., Spraggon, G., Lee, C.C., Klock, H., McMullan, D., Ng, K., Shin, T., Vincent, J., Warner, I., Ericson, C., Lesley, S.A.

(2003) J Mol Biology 330: 309-321

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptococcus pneumoniae
Macromolecule	peptide deformylase DEFB (protein)
Unique Ligands	FE, GOL

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1LME \| pdb_00001lme	Download File View File

Crystal Structure of Peptide Deformylase from Thermotoga maritima

Kreusch, A., Spraggon, G., Lee, C.C., Klock, H., McMullan, D., Ng, K., Shin, T., Vincent, J., Warner, I., Ericson, C., Lesley, S.A., Joint Center for Structural Genomics (JCSG)

(2003) J Mol Biology 330: 309-321

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermotoga maritima
Macromolecule	peptide deformylase (protein)

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1LWU \| pdb_00001lwu	Download File View File

Crystal structure of fragment D from lamprey fibrinogen complexed with the peptide Gly-His-Arg-Pro-amide

Yang, Z., Spraggon, G., Pandi, L., Everse, S.J., Riley, M., Doolittle, R.F.

(2002) Biochemistry 41: 10218-10224

Released	2002-08-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Petromyzon marinus
Macromolecule	Fibrinogen alpha-1 chain (protein) Fibrinogen beta chain (protein) Fibrinogen gamma chain (protein) Peptide Ligand Gly-His-Arg-Pro-NH2 (protein)
Unique Ligands	BMA, CA, GAL, MAN, NAG, NDG
Unique branched monosaccharides	NAG

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1N5N \| pdb_00001n5n	Download File View File

Crystal Structure of Peptide Deformylase from Pseudomonas aeruginosa

Kreusch, A., Spraggon, G., Lee, C.C., Klock, H., McMullan, D., Ng, K., Shin, T., Vincent, J., Warner, I., Ericson, C., Lesley, S.A.

(2003) J Mol Biology 330: 309-321

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Peptide deformylase (protein)
Unique Ligands	GOL, ZN

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1NH1 \| pdb_00001nh1	Download File View File

Crystal Structure of the Type III Effector AvrB from Pseudomonas syringae.

Lee, C.C., Wood, M.D., Ng, K., Luginbuhl, P., Spraggon, G., Katagiri, F.

(2004) Structure 12: 487-494

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas syringae
Macromolecule	Avirulence B protein (protein)

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1QQR \| pdb_00001qqr	Download File View File

CRYSTAL STRUCTURE OF STREPTOKINASE DOMAIN B

Spraggon, G., Zhang, X.X., Ponting, C.P., Fox, V.F., Phillips, C., Smith, R.A.G., Jones, E.Y., Dobson, C., Stuart, D.I.

To be published

Released	1999-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptococcus dysgalactiae subsp. equisimilis
Macromolecule	STREPTOKINASE DOMAIN B (protein)

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1S96 \| pdb_00001s96	Download File View File

The 2.0 A X-ray structure of Guanylate Kinase from E.coli

Kreusch, A., Spraggon, G., Klock, H.E., McMullan, D., Vincent, J., Rodrigues, K., Lesley, S.A.

To be published

Released	2004-02-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Guanylate kinase (protein)
Unique Ligands	PO4, UNX

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1SJ5 \| pdb_00001sj5	Download File View File

Crystal structure of a duf151 family protein (tm0160) from thermotoga maritima at 2.8 A resolution

Spraggon, G., Panatazatos, D., Klock, H.E., Wilson, I.A., Woods Jr., V.L., Lesley, S.A., Joint Center for Structural Genomics (JCSG)

(2004) Protein Sci 13: 3187-3199

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermotoga maritima
Macromolecule	conserved hypothetical protein TM0160 (protein)

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1T6H \| pdb_00001t6h	Download File View File

Crystal Structure T4 Lysozyme incorporating an unnatural amino acid p-iodo-L-phenylalanine at position 153

Spraggon, G., Xie, J., Wang, L., Wu, N., Brock, A., Schultz, P.G.

(2004) Nat Biotechnol 22: 1297-1301

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Tequatrovirus T4
Macromolecule	Lysozyme (protein)
Unique Ligands	BME, CL

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1ZH0 \| pdb_00001zh0	Download File View File

Crystal Structure of L-3-(2-napthyl)alanine-tRNA synthetase in complex with L-3-(2-napthyl)alanine

Turner, J.M., Graziano, J., Spraggon, G., Schultz, P.G.

(2006) Proc Natl Acad Sci U S A 103: 6483-6488

Released	2006-04-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Tyrosyl-tRNA synthetase (protein)
Unique Ligands	NAL, TRS

1 to 25 of 100 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1FZA | pdb_00001fza

1FZB | pdb_00001fzb

1FZC | pdb_00001fzc

1FZD | pdb_00001fzd

1FZE | pdb_00001fze

1FZF | pdb_00001fzf

1FZG | pdb_00001fzg

1I7Q | pdb_00001i7q

1I7S | pdb_00001i7s

1J7J | pdb_00001j7j

1JES | pdb_00001jes

1KEX | pdb_00001kex

1KGZ | pdb_00001kgz

1KHD | pdb_00001khd

1LM4 | pdb_00001lm4

1LM6 | pdb_00001lm6

1LME | pdb_00001lme

1LWU | pdb_00001lwu

1N5N | pdb_00001n5n

1NH1 | pdb_00001nh1

1QQR | pdb_00001qqr

1S96 | pdb_00001s96

1SJ5 | pdb_00001sj5

1T6H | pdb_00001t6h

1ZH0 | pdb_00001zh0