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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Stanfield, R.L."

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Search Summary

This query matches 158 Structures.

Refinements

Structure Determination Methodology

experimental (158)

Scientific Name of Source Organism

	Homo sapiens (84)
	Mus musculus (21)
	Bos taurus (19)
	synthetic construct (15)
	Human immunodeficiency virus 1 (14)
	Oryctolagus cuniculus (13)
	Human respiratory syncytial virus A2 (11)
	Ginglymostoma cirratum (6)
	Human immunodeficiency virus type 1 group M subtype B (isolate MN) (5)
	Gallus gallus (4)

More...

Taxonomy

	Eukaryota (141)
	Riboviria (33)
	other sequences (15)
	Riboviria (RNA viruses and viroids) (6)
	Bacteria (2)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (157)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (158)
	DNA (17)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (5)
	1.5 - 2.0 (43)
	2.0 - 2.5 (55)
	2.5 - 3.0 (35)
	3.0 - 3.5 (7)
	3.5 - 4.0 (3)
	4.0 - 4.5 (4)
	> 4.5 (4)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (4)
	2000 - 2004 (5)
	2005 - 2009 (14)
	2010 - 2014 (18)
	2015 - 2019 (54)
	2020 - 2024 (35)
	2025 - 2029 (25)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (5)
	Translocases (2)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	mpstruc (2)
	OPM (1)

Symmetry Type

	Asymmetric (116)
	Cyclic (40)
	Dihedral (5)

SCOP Classification

	All beta proteins (61)
	Alpha and beta proteins (a+b) (7)
	Artifacts (8)
	All alpha proteins (3)
	Alpha and beta proteins (a/b) (1)
	Membrane and cell surface proteins and peptides (1)
	Small proteins (1)

AllSelected

1 to 25 of 158 Structures

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1F58 \| pdb_00001f58	Download File View File

IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 24-RESIDUE PEPTIDE (RESIDUES 308-333 OF HIV-1 GP120 (MN ISOLATE) WITH ALA TO AIB SUBSTITUTION AT POSITION 323

Stanfield, R.L., Cabezas, E., Satterthwait, A.C., Stura, E.A., Profy, A.T., Wilson, I.A.

(1999) Structure 7: 131-142

Released	1999-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_MN Mus musculus
Macromolecule	Envelope glycoprotein gp120 (protein) PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) (protein) PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) (protein)

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1GGI \| pdb_00001ggi	Download File View File

CRYSTAL STRUCTURE OF AN HIV-1 NEUTRALIZING ANTIBODY 50.1 IN COMPLEX WITH ITS V3 LOOP PEPTIDE ANTIGEN

Stanfield, R.L., Rini, J.M., Wilson, I.A.

(1993) Proc Natl Acad Sci U S A 90: 6325-6329

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate MN) Mus musculus
Macromolecule	HIV-1 V3 LOOP PEPTIDE ANTIGEN (protein) IGG2A 50.1 FAB (HEAVY CHAIN) (protein) IGG2A 50.1 FAB (LIGHT CHAIN) (protein)

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1IGF \| pdb_00001igf	Download File View File

CRYSTAL STRUCTURES OF AN ANTIBODY TO A PEPTIDE AND ITS COMPLEX WITH PEPTIDE ANTIGEN AT 2.8 ANGSTROMS

Stanfield, R.L., Wilson, I.A.

(1990) Science 248: 712-719

Released	1992-04-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	IGG1-KAPPA B13I2 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA B13I2 FAB (LIGHT CHAIN) (protein)
Unique Ligands	NAG

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1NAK \| pdb_00001nak	Download File View File

IGG1 FAB FRAGMENT (83.1) COMPLEX WITH 16-RESIDUE PEPTIDE (RESIDUES 304-321 OF HIV-1 GP120 (MN ISOLATE))

Stanfield, R.L., Ghiara, J.B., Saphire, E.O., Profy, A.T., Wilson, I.A.

(2003) Virology 315: 159-173

Released	2003-11-18
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate MN) Mus musculus
Macromolecule	Fab 83.1 - heavy chain (protein) Fab 83.1 - light chain (protein) Peptide MP1 (protein)

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1Q1J \| pdb_00001q1j	Download File View File

Crystal Structure Analysis of anti-HIV-1 Fab 447-52D in complex with V3 peptide

Stanfield, R.L., Gorny, M.K., Williams, C., Zolla-Pazner, S., Wilson, I.A.

(2004) Structure 12: 193-204

Released	2004-02-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype B (isolate MN)
Macromolecule	Fab 447-52D, heavy chain (protein) Fab 447-52D, light chain (protein) gp120 V3 peptide (protein)

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1SQ2 \| pdb_00001sq2	Download File View File

Crystal Structure Analysis of the Nurse Shark New Antigen Receptor (NAR) Variable Domain in Complex With Lysozyme

Stanfield, R.L., Dooley, H., Flajnik, M.F., Wilson, I.A.

(2004) Science 305: 1770-1773

Released	2004-08-24
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Gallus gallus Ginglymostoma cirratum
Macromolecule	Lysozyme C (protein) novel antigen receptor (protein)
Unique Ligands	CL, EDO

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1T6V \| pdb_00001t6v	Download File View File

Crystal structure analysis of the nurse shark new antigen receptor (NAR) variable domain in complex with lysozyme

Stanfield, R.L., Dooley, H., Flajnik, M.F., Wilson, I.A.

(2004) Science 305: 1770-1773

Released	2004-08-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus Ginglymostoma cirratum
Macromolecule	Lysozyme C (protein) novel antigen receptor (protein)
Unique Ligands	CL

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1TCR \| pdb_00001tcr	Download File View File

MURINE T-CELL ANTIGEN RECEPTOR 2C CLONE

Garcia, K.C., Degano, M., Stanfield, R.L., Wilson, I.A.

(1996) Science 274: 209-219

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	ALPHA, BETA T-CELL RECEPTOR (VB8.2DB2JB2.4CB2\;VA3JA58CA) (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BMA, FUC, NAG

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1TZG \| pdb_00001tzg	Download File View File

Crystal structure of HIV-1 neutralizing human Fab 4E10 in complex with a 13-residue peptide containing the 4E10 epitope on gp41

Cardoso, R.M.F., Zwick, M.B., Stanfield, R.L., Kunert, R., Binley, J.M., Katinger, H., Burton, D.R., Wilson, I.A.

(2005) Immunity 22: 163-173

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Envelope polyprotein GP160 (protein) Fab 4E10 (protein)
Unique Ligands	GOL

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1W72 \| pdb_00001w72	Download File View File

Crystal structure of HLA-A1:MAGE-A1 in complex with Fab-Hyb3

Hulsmeyer, M., Chames, P., Hillig, R.C., Stanfield, R.L., Held, G., Coulie, P.G., Alings, C., Wille, G., Saenger, W., Uchanska-Ziegler, B., Hoogenboom, H.R., Ziegler, A.

(2005) J Biological Chem 280: 2972

Released	2004-11-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN (protein) HYB3 HEAVY CHAIN (protein) HYB3 LIGHT CHAIN (protein) MELANOMA-ASSOCIATED ANTIGEN 1 (protein)
Unique Ligands	GOL

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2B0S \| pdb_00002b0s	Download File View File

Crystal structure analysis of anti-HIV-1 V3 Fab 2219 in complex with MN peptide

Stanfield, R.L., Gorny, M.K., Zolla-Pazner, S., Wilson, I.A.

(2006) J Virol 80: 6093-6105

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype B (isolate MN)
Macromolecule	Fab 2219, heavy chain (protein) Fab 2219, light chain (protein) MN peptide of Exterior membrane glycoprotein GP120 (protein)
Unique Ligands	ACY, EDO

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2B1A \| pdb_00002b1a	Download File View File

Crystal structure analysis of anti-HIV-1 V3 Fab 2219 in complex with UG1033 peptide

Stanfield, R.L., Gorny, M.K., Zolla-Pazner, S., Wilson, I.A.

(2006) J Virol 80: 6093-6105

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.348 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1
Macromolecule	Fab 2219, heavy chain (protein) Fab 2219, light chain (protein) UG1033 peptide of Exterior membrane glycoprotein GP120 (protein)

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2B1H \| pdb_00002b1h	Download File View File

Crystal structure analysis of anti-HIV-1 V3 Fab 2219 in complex with UG29 peptide

Stanfield, R.L., Gorny, M.K., Zolla-Pazner, S., Wilson, I.A.

(2006) J Virol 80: 6093-6105

Released	2006-07-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Fab 2219, heavy chain (protein) Fab 2219, light chain (protein) UG29 peptide of Exterior membrane glycoprotein GP120 (protein)

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2B4C \| pdb_00002b4c	Download File View File

Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody

Huang, C., Tang, M., Zhang, M.Y., Majeed, S., Montabana, E., Stanfield, R.L., Dimitrov, D.S., Korber, B., Sodroski, J., Wilson, I.A., Wyatt, R., Kwong, P.D.

(2005) Science 310: 1025-1028

Released	2005-11-15
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	T-cell surface glycoprotein CD4 (protein) anti-HIV-1 gp120 immunoglobulin X5 heavy chain (protein) anti-HIV-1 gp120 immunoglobulin X5 light chain (protein) envelope glycoprotein (protein)
Unique Ligands	NAG, SO4, XYL
Unique branched monosaccharides	FUC, NAG

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2F58 \| pdb_00002f58	Download File View File

IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 12-RESIDUE CYCLIC PEPTIDE (INCLUDING RESIDUES 315-324 OF HIV-1 GP120) (MN ISOLATE)

Stanfield, R.L., Cabezas, E., Satterthwait, A.C., Stura, E.A., Profy, A.T., Wilson, I.A.

(1999) Structure 7: 131-142

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (HIV-1 GP120) (protein) PROTEIN (IGG1 FAB 58.2 ANTIBODY (HEAVY CHAIN)) (protein) PROTEIN (IGG1 FAB 58.2 ANTIBODY (LIGHT CHAIN)) (protein)
Unique Ligands	ARN

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2I24 \| pdb_00002i24	Download File View File

Crystal structure analysis of the nurse shark New Antigen Receptor PBLA8 variable domain

Stanfield, R.L., Wilson, I.A.

(2007) J Mol Biology 367: 358-372

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Ginglymostoma cirratum
Macromolecule	New Antigen Receptor PBLA8 (protein)
Unique Ligands	CL

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2I25 \| pdb_00002i25	Download File View File

Crystal structure analysis of the nurse shark New antigen Receptor PBLA8 variable domain in complex with lysozyme

Stanfield, R.L., Wilson, I.A.

(2007) J Mol Biology 367: 358-372

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus Ginglymostoma cirratum
Macromolecule	Lysozyme C (protein) New Antigen Receptor PBLA8 (protein)

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2I26 \| pdb_00002i26	Download File View File

Crystal structure analysis of the nurse shark new antigen receptor ancestral variable domain in complex with lysozyme

Stanfield, R.L., Wilson, I.A.

(2007) J Mol Biology 367: 358-372

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Gallus gallus Ginglymostoma cirratum
Macromolecule	Lysozyme C (protein) New Antigen Receptor Ancestral (protein)
Unique Ligands	SO4

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2I27 \| pdb_00002i27	Download File View File

Crystal Structure Analysis of the Nurse Shark New Antigen Receptor Ancestral variable domain

Stanfield, R.L., Wilson, I.A.

(2007) J Mol Biology 367: 358-372

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Ginglymostoma cirratum
Macromolecule	New Antigen Receptor Ancestral (protein)

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2IGF \| pdb_00002igf	Download File View File

CRYSTAL STRUCTURES OF AN ANTIBODY TO A PEPTIDE AND ITS COMPLEX WITH PEPTIDE ANTIGEN AT 2.8 ANGSTROMS

Stanfield, R.L., Wilson, I.A.

(1990) Science 248: 712-719

Released	1992-04-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus Themiste hennahi
Macromolecule	IGG1-KAPPA B13I2 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA B13I2 FAB (LIGHT CHAIN) (protein) PEPTIDE (RESIDUES 69-87 OF MYOHEMERYTHRIN) (protein)
Unique Ligands	NAG

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2LT7 \| pdb_00002lt7	Download File View File

Solution NMR structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA

Buck-Koehntop, B.A., Stanfield, R.L., Ekiert, D.C., Martinez-Yamout, M.A., Dyson, H., Wilson, I.A., Wright, P.E.

(2012) Proc Natl Acad Sci U S A 109: 15229-15234

Released	2012-09-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator Kaiso (protein) DNA (5'-D(CPGPTPTPAPTPTPGPGPCPAPGPGPAPAPGPCPAPC)-3') (nucleic acid) DNA (5'-D(GPTPGPCPTPTPCPCPTPGPCPCPAPAPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	ZN

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2OJZ \| pdb_00002ojz	Download File View File

Anti-DNA antibody ED10

Stanfield, R.L., Sanguineti, S., Wilson, I.A., de Prat-Gay, G.

(2007) J Mol Biology 370: 183-195

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Mus musculus
Macromolecule	Fab ED10 heavy chain (protein) Fab ED10 light chain (protein)

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2OK0 \| pdb_00002ok0	Download File View File

Fab ED10-DNA complex

Stanfield, R.L., Sanguineti, S., Wilson, I.A., de Prat-Gay, G.

(2007) J Mol Biology 370: 183-195

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Mus musculus
Macromolecule	Fab ED10 heavy chain (protein) Fab ED10 light chain (protein) 5'-D(TPC)-3' (nucleic acid)

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2OQJ \| pdb_00002oqj	Download File View File

Crystal structure analysis of Fab 2G12 in complex with peptide 2G12.1

Calarese, D.A., Stanfield, R.L., Menendez, A., Scott, J.K., Wilson, I.A.

(2008) FASEB J 22: 1380-1392

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Fab 2G12 heavy chain (protein) Fab 2G12 light chain (protein) peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK) (protein)

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2QSC \| pdb_00002qsc	Download File View File

Crystal structure analysis of anti-HIV-1 V3-Fab F425-B4e8 in complex with a V3-peptide

Bell, C.H., Schiefner, A., Stanfield, R.L., Wilson, I.A.

(2008) J Mol Biology 375: 969-978

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype B (isolate MN)
Macromolecule	Envelope glycoprotein gp120 (protein) Fab F425-B4e8, Heavy chain (protein) Fab F425-B4e8, Light chain (protein)
Unique Ligands	CL, ZN
Unique branched monosaccharides	BMA, NAG

1 to 25 of 158 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1F58 | pdb_00001f58

1GGI | pdb_00001ggi

1IGF | pdb_00001igf

1NAK | pdb_00001nak

1Q1J | pdb_00001q1j

1SQ2 | pdb_00001sq2

1T6V | pdb_00001t6v

1TCR | pdb_00001tcr

1TZG | pdb_00001tzg

1W72 | pdb_00001w72

2B0S | pdb_00002b0s

2B1A | pdb_00002b1a

2B1H | pdb_00002b1h

2B4C | pdb_00002b4c

2F58 | pdb_00002f58

2I24 | pdb_00002i24

2I25 | pdb_00002i25

2I26 | pdb_00002i26

2I27 | pdb_00002i27

2IGF | pdb_00002igf

2LT7 | pdb_00002lt7

2OJZ | pdb_00002ojz

2OK0 | pdb_00002ok0

2OQJ | pdb_00002oqj

2QSC | pdb_00002qsc