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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Takeda, N."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Norwalk-like virus (5)
	Paslahepevirus balayani (2)
	Arabidopsis thaliana (1)
	Bacillus sp. JAMB-602 (1)
	Hepatitis E virus (strain Myanmar) (1)

Taxonomy

	Riboviria (8)
	Bacteria (1)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	3.5 - 4.0 (2)
	> 4.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (7)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Cyclic (5)
	Icosahedral (3)
	Asymmetric (2)

SCOP Classification

	All beta proteins (6)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 10 of 10 Structures

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1WKY \| pdb_00001wky	Download File View File

Crystal structure of alkaline mannanase from Bacillus sp. strain JAMB-602: catalytic domain and its Carbohydrate Binding Module

Akita, M., Takeda, N., Hirasawa, K., Sakai, H., Kawamoto, M., Yamamoto, M., Grant, W.D., Hatada, Y., Ito, S., Horikoshi, K.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1490-1492

Released	2005-06-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bacillus sp. JAMB-602
Macromolecule	endo-beta-1,4-Mannanase (protein)
Unique Ligands	CA, CL, NA

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2JZ4 \| pdb_00002jz4	Download File View File

Putative 32 kDa myrosinase binding protein At3g16450.1 from Arabidopsis thaliana

Takeda, N., Sugimori, N., Torizawa, T., Terauchi, T., Ono, A.M., Yagi, H., Yamaguchi, Y., Kato, K., Ikeya, T., Guntert, P., Aceti, D.J., Markley, J.L., Kainosho, M., Center for Eukaryotic Structural Genomics (CESG)

(2008) FEBS J 275: 5873-5884

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Jasmonate inducible protein isolog (protein)

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2ZTN \| pdb_00002ztn	Download File View File

Hepatitis E virus ORF2 (Genotype 3)

Yamashita, T., Unno, H., Mori, Y., Li, T.C., Takeda, N., Matsuura, Y.

(2009) Proc Natl Acad Sci U S A 106: 12986-12991

Released	2009-08-25
Method	X-RAY DIFFRACTION 3.56 Å
Organisms	Paslahepevirus balayani
Macromolecule	Capsid protein (protein)

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2ZZQ \| pdb_00002zzq	Download File View File

Crystal structure analysis of the HEV capsid protein, PORF2

Miyazaki, N., Xing, L., Wang, C.-Y., Li, T.-C., Takeda, N., Higashiura, A., Nakagawa, A., Tsukihara, T., Miyamura, T., Cheng, R.H.

To be published

Released	2010-03-09
Method	X-RAY DIFFRACTION 3.81 Å
Organisms	Hepatitis E virus (strain Myanmar)
Macromolecule	Protein ORF3, Capsid protein (protein)

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3ASP \| pdb_00003asp	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA
Unique branched monosaccharides	A2G, FUC, GAL, NAG

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3ASQ \| pdb_00003asq	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with H-antigen

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3ASR \| pdb_00003asr	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-a

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3ASS \| pdb_00003ass	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-b

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3AST \| pdb_00003ast	Download File View File

Crystal structure of P domain Q389N mutant from Norovirus Funabashi258 stain in the complex with Lewis-b

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG