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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Thompson, R."

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Cowpea mosaic virus (2)
	Salmonella enterica subsp. enterica serovar Typhi (2)
	Emesvirus zinderi (1)
	Rasamsonia emersonii (1)
	Spinacia oleracea (1)
	Staphylococcus aureus (1)

Taxonomy

	Bacteria (3)
	Riboviria (3)
	Eukaryota (2)

Experimental Method

	ELECTRON MICROSCOPY (4)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (1)
	2015 - 2019 (3)
	2020 - 2024 (3)

Enzyme Classification Name

	Lyases (3)
	Hydrolases (1)
	Translocases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Cyclic (3)
	Icosahedral (3)
	Asymmetric (2)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All beta proteins (2)

AllSelected

1 to 8 of 8 Structures

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Explore in 3D

1Q9H \| pdb_00001q9h	Download File View File

3-Dimensional structure of native Cel7A from Talaromyces emersonii

Grassick, A., Thompson, R., Murray, P.G., Collins, C.M., Byrnes, L., Tuohy, M.G., Birrane, G., Higgins, T.M.

(2004) Eur J Biochem 271: 4495-4506

Released	2004-11-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Rasamsonia emersonii
Macromolecule	cellobiohydrolase I catalytic domain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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4BP7 \| pdb_00004bp7	Download File View File

Asymmetric structure of a virus-receptor complex

Dent, K.C., Thompson, R., Barker, A.M., Barr, J.N., Hiscox, J.A., Stockley, P.G., Ranson, N.A.

(2013) Structure 21: 1225-1234

Released	2013-07-17
Method	ELECTRON MICROSCOPY 39 Å
Organisms	Emesvirus zinderi
Macromolecule	COAT PROTEIN (protein)

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5A32 \| pdb_00005a32	Download File View File

Electron cryo-microscopy of Cowpea Mosaic Virus containing RNA-1 (CPMVb)

Hesketh, E.L., Meshcheriakova, Y., Dent, K.C., Saxena, P., Thompson, R., Cockburn, J.J., Lomonossoff, G.P., Ranson, N.A.

(2015) Nat Commun 6: 10113-10113

Released	2015-12-23
Method	ELECTRON MICROSCOPY 3.44 Å
Organisms	Cowpea mosaic virus
Macromolecule	RNA2 POLYPROTEIN (protein)

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5A33 \| pdb_00005a33	Download File View File

Electron cryo-microscopy of Cowpea Mosaic Virus (CPMV) empty virus like particle (eVLP)

Hesketh, E.L., Meshcheriakova, Y., Dent, K.C., Saxena, P., Thompson, R., Cockburn, J.J., Lomonossoff, G.P., Ranson, N.A.

(2015) Nat Commun 6: 10113-10113

Released	2015-12-23
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Cowpea mosaic virus
Macromolecule	RNA2 POLYPROTEIN (protein)

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6RQF \| pdb_00006rqf	Download File View File

3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with natively bound thylakoid lipids and plastoquinone molecules

Malone, L.A., Qian, P., Mayneord, G.E., Hitchcock, A., Farmer, D., Thompson, R., Swainsbury, D.J.K., Ranson, N., Hunter, C.N., Johnson, M.P.

(2019) Nature 575: 535-539

Released	2019-11-13
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Spinacia oleracea
Macromolecule	Unique protein chains: 8
Unique Ligands	6PL, BCR, CLA, FES, HEC, HEM, LMG, PGV, PL9, SQD

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6SFE \| pdb_00006sfe	Download File View File

CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 7

Sanz-Gaitero, M., Lence, E., Maneiro, M., Thompson, R., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.

(2020) Chemistry 26: 8035-8044

Released	2020-04-15
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	3-dehydroquinate dehydratase (protein)
Unique Ligands	L9Z

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6SFG \| pdb_00006sfg	Download File View File

CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 9

Sanz-Gaitero, M., Lence, E., Maneiro, M., Thompson, R., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.

(2020) Chemistry 26: 8035-8044

Released	2020-04-15
Method	X-RAY DIFFRACTION 1.23 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	3-dehydroquinate dehydratase (protein)
Unique Ligands	FQZ, FSQ

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6SFH \| pdb_00006sfh	Download File View File

CRYSTAL STRUCTURE OF DHQ1 FROM Staphylococcus aureus COVALENTLY MODIFIED BY LIGAND 7

Sanz-Gaitero, M., Lence, E., Maneiro, M., Thompson, R., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.

(2020) Chemistry 26: 8035-8044

Released	2020-04-15
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Staphylococcus aureus
Macromolecule	3-dehydroquinate dehydratase (protein)
Unique Ligands	L9Z, LI, SO4

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1Q9H | pdb_00001q9h

3-Dimensional structure of native Cel7A from Talaromyces emersonii

4BP7 | pdb_00004bp7

Asymmetric structure of a virus-receptor complex

5A32 | pdb_00005a32

Electron cryo-microscopy of Cowpea Mosaic Virus containing RNA-1 (CPMVb)

5A33 | pdb_00005a33

Electron cryo-microscopy of Cowpea Mosaic Virus (CPMV) empty virus like particle (eVLP)

6RQF | pdb_00006rqf

3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with natively bound thylakoid lipids and plastoquinone molecules

6SFE | pdb_00006sfe

CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 7

6SFG | pdb_00006sfg

CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 9

6SFH | pdb_00006sfh

CRYSTAL STRUCTURE OF DHQ1 FROM Staphylococcus aureus COVALENTLY MODIFIED BY LIGAND 7

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1Q9H | pdb_00001q9h

4BP7 | pdb_00004bp7

5A32 | pdb_00005a32

5A33 | pdb_00005a33

6RQF | pdb_00006rqf

6SFE | pdb_00006sfe

6SFG | pdb_00006sfg

6SFH | pdb_00006sfh