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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tronrud, D.E."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Bacillus thermoproteolyticus (6)
	Escherichia coli (3)
	Helicobacter mustelae 12198 (2)
	Prosthecochloris aestuarii (2)
	Escherichia coli BL21 (1)
	Lambdavirus lambda (1)
	Pelodictyon phaeum (1)

Taxonomy

	Bacteria (15)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (16)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	1980 - 1984 (1)
	1985 - 1989 (5)
	1995 - 1999 (2)
	2000 - 2004 (3)
	2005 - 2009 (1)
	2010 - 2014 (4)

Enzyme Classification Name

Hydrolases (12)

Symmetry Type

	Dihedral (5)
	Asymmetric (6)
	Cyclic (4)
	Tetrahedral (2)

SCOP Classification

	All beta proteins (6)
	Alpha and beta proteins (a/b) (3)
	Alpha and beta proteins (a+b) (6)
	All alpha proteins (1)

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1 to 16 of 16 Structures

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1DP0 \| pdb_00001dp0	Download File View File

E. COLI BETA-GALACTOSIDASE AT 1.7 ANGSTROM

Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.

(2000) Protein Sci 9: 1685-1699

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	DMS, MG, NA

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1F4A \| pdb_00001f4a	Download File View File

E. COLI (LACZ) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-ORTHORHOMBIC)

Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.

(2000) Protein Sci 9: 1685-1699

Released	2001-02-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	MG

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1F4H \| pdb_00001f4h	Download File View File

E. COLI (LACZ) BETA-GALACTOSIDASE (ORTHORHOMBIC)

Juers, D.H., Jacobson, R.H., Wigley, D., Zhang, X.J., Huber, R.E., Tronrud, D.E., Matthews, B.W.

(2000) Protein Sci 9: 1685-1699

Released	2001-02-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	MG

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1TLP \| pdb_00001tlp	Download File View File

CRYSTALLOGRAPHIC STRUCTURAL ANALYSIS OF PHOSPHORAMIDATES AS INHIBITORS AND TRANSITION-STATE ANALOGS OF THERMOLYSIN

Tronrud, D.E., Monzingo, A.F., Matthews, B.W.

(1986) Eur J Biochem 157: 261-268

Released	1989-01-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	THERMOLYSIN (protein)
Unique Ligands	CA, RDF, ZN

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2TMN \| pdb_00002tmn	Download File View File

CRYSTALLOGRAPHIC STRUCTURAL ANALYSIS OF PHOSPHORAMIDATES AS INHIBITORS AND TRANSITION-STATE ANALOGS OF THERMOLYSIN

Tronrud, D.E., Monzingo, A.F., Matthews, B.W.

(1986) Eur J Biochem 157: 261-268

Released	1989-01-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	Thermolysin (protein)
Unique Ligands	0FA, CA, ZN

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3EOJ \| pdb_00003eoj	Download File View File

Fmo protein from Prosthecochloris Aestuarii 2K AT 1.3A Resolution

Tronrud, D.E., Wen, J., Gay, L., Blankenship, R.E.

(2009) Photosynth Res 100: 79-87

Released	2009-05-12
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Prosthecochloris aestuarii
Macromolecule	Bacteriochlorophyll a protein (protein)
Unique Ligands	BCL, EDO, NA, NH4

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3QGA \| pdb_00003qga	Download File View File

3.0 A Model of Iron Containing Urease UreA2B2 from Helicobacter mustelae

Tronrud, D.E., Robbins, A., Karplus, P.A.

(2011) Proc Natl Acad Sci U S A 108: 13095-13099

Released	2011-08-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Helicobacter mustelae 12198
Macromolecule	Fusion of urease beta and gamma subunits (protein) Urease subunit beta 2 (protein)
Unique Ligands	FE

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3QGK \| pdb_00003qgk	Download File View File

3.0 A Model of Iron Containing Urease UreA2B2 from Helicobacter mustelae (refined w/ no ordered solvent)

Tronrud, D.E., Robbins, A., Karplus, P.A.

(2011) Proc Natl Acad Sci U S A 108: 13095-13099

Released	2011-08-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Helicobacter mustelae 12198
Macromolecule	Fusion of urease beta and gamma subunits (protein) Urease subunit beta 2 (protein)
Unique Ligands	FE

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3VDI \| pdb_00003vdi	Download File View File

Structure of the FMO protein from Pelodictyon phaeum

Tronrud, D.E., Larson, C.R., Seng, C.O., Lauman, L., Matthies, H.J., Wen, J., Blankenship, R.E., Allen, J.P.

(2012) Photosynth Res 112: 71-74

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Pelodictyon phaeum
Macromolecule	bacteriochlorophyll A protein (protein)
Unique Ligands	BCL, PG4

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4BCL \| pdb_00004bcl	Download File View File

FMO protein from Prosthecochloris aestuarii 2K at Room Temperature

Tronrud, D.E., Matthews, B.W.

(1993) Photosynthetic Reaction Center 1: 13

Released	1998-09-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Prosthecochloris aestuarii
Macromolecule	BACTERIOCHLOROPHYLL A PROTEIN (protein)
Unique Ligands	BCL