RCSB PDB: Search

1EKA \| pdb_00001eka	Download File View File

NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2

Chen, X., McDowell, J.A., Kierzek, R., Krugh, T.R., Turner, D.H.

(2000) Biochemistry 39: 8970-8982

Released	2000-11-13
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPAPGPUPGPCPUPC)-3') (nucleic acid)

Explore in 3D

1EKD \| pdb_00001ekd	Download File View File

NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2

Chen, X., McDowell, J.A., Kierzek, R., Krugh, T.R., Turner, D.H.

(2000) Biochemistry 39: 8970-8982

Released	2000-11-13
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPCPGPUPGPCPC)-3') (nucleic acid)

Explore in 3D

1F5G \| pdb_00001f5g	Download File View File

The G7(syn)-G4(anti) structure of r(GCAGGCGUGC)2

Burkard, M.E., Turner, D.H.

(2000) Biochemistry 39: 11748-11762

Released	2000-06-26
Method	SOLUTION NMR
Macromolecule	5'-R(GPCPAPGPGPCPGPUPGPC)-3' (nucleic acid)

Explore in 3D

1F5H \| pdb_00001f5h	Download File View File

The G7(syn)-G4(anti) structure of r(GCAGGCGUGC)2

Burkard, M.E., Turner, D.H.

(2000) Biochemistry 39: 11748-11762

Released	2000-06-26
Method	SOLUTION NMR
Macromolecule	5'-R(GPCPAPGPGPCPGPUPGPC)-3' (nucleic acid)

Explore in 3D

1G3A \| pdb_00001g3a	Download File View File

STRUCTURE OF RNA DUPLEXES (CIGCGICG)2

Chen, X., Kierzek, R., Turner, D.H.

(2001) J Am Chem Soc 123: 1267-1274

Released	2001-08-01
Method	SOLUTION NMR
Macromolecule	5'-R(CP(IG)PCPGP(IC)PG)-3' (nucleic acid)

Explore in 3D

1GUC \| pdb_00001guc	Download File View File

SOLUTION NMR STRUCTURE OF AN RNA WITH TANDEM, SYMMETRIC GU MISMATCHES, 30 STRUCTURES

Mcdowell, J.A., Turner, D.H.

(1996) Biochemistry 35: 14077-14089

Released	1997-02-12
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPAPGPGPUPCPUPC)-3') (nucleic acid)

Explore in 3D

1MIS \| pdb_00001mis	Download File View File

STRUCTURE OF RNA (5'-R(GPCPGPGPAPCPGP*C)-3') ANTI-PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATCHES, NMR, MINIMIZED AVERAGE STRUCTURE

Wu, M., Turner, D.H.

(1996) Biochemistry 35: 9677-9689

Released	1997-07-07
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPCPGPGPAPCPGPC)-3') (nucleic acid)

Explore in 3D

1MUV \| pdb_00001muv	Download File View File

Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2

Znosko, B.M., Burkard, M.E., Schroeder, S.J., Krugh, T.R., Turner, D.H.

(2002) Biochemistry 41: 14969-14977

Released	2002-12-18
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPCPAPAPGPCPCP*U)-3' (nucleic acid)

Explore in 3D

1MV1 \| pdb_00001mv1	Download File View File

The Tandem, Sheared PA Pairs in 5'(rGGCPAGCCU)2

Znosko, B.M., Burkard, M.E., Krugh, T.R., Turner, D.H.

(2002) Biochemistry 41: 14978-14987

Released	2002-12-18
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPCP(P5P)PAPGPCPCP*U)-3' (nucleic acid)

Explore in 3D

1MV2 \| pdb_00001mv2	Download File View File

The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2

Znosko, B.M., Burkard, M.E., Krugh, T.R., Turner, D.H.

(2002) Biochemistry 41: 14978-14987

Released	2002-12-18
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPCPAP(P5P)PGPCPCP*U)-3' (nucleic acid)

Explore in 3D

1MV6 \| pdb_00001mv6	Download File View File

The tandem, Sheared PP Pairs in 5'(rGGCPPGCCU)2

Znosko, B.M., Burkard, M.E., Krugh, T.R., Turner, D.H.

(2002) Biochemistry 41: 14978-14987

Released	2002-12-18
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPCP(P5P)P(P5P)PGPCPCP*U)-3' (nucleic acid)

Explore in 3D

1MWG \| pdb_00001mwg	Download File View File

STRUCTURE OF RIBONUCLEIC ACID, NMR, MINIMIZED AVERAGE STRUCTURE

Wu, M., Santalucia, J., Turner, D.H.

(1996) Biochemistry 35: 9677-9689

Released	1997-03-12
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPCPAPGPGPCPC)-3') (nucleic acid)

Explore in 3D

1NTQ \| pdb_00001ntq	Download File View File

5'(dCCUCCUU)3':3'(rAGGAGGAAA)5'

Znosko, B.M., Barnes III, T.W., Krugh, T.R., Turner, D.H.

(2003) J Am Chem Soc 125: 6090-6097

Released	2003-06-10
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPUPCPCPUPU)-3' (nucleic acid) 5'-R(APAPAPGPGPAPGPGPA)-3' (nucleic acid)

Explore in 3D

1NTS \| pdb_00001nts	Download File View File

5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl

Znosko, B.M., Barnes III, T.W., Krugh, T.R., Turner, D.H.

(2003) J Am Chem Soc 125: 6090-6097

Released	2003-06-10
Method	SOLUTION NMR
Macromolecule	5'-D((5PC)P(5PC)P(PDU)P(5PC)P(5PC)P(PDU)P(PDU))-3' (nucleic acid) 5'-R(APAPAPGPGPAPGPGPA)-3' (nucleic acid)

Explore in 3D

1NTT \| pdb_00001ntt	Download File View File

5'(dCPCPUPCPCPUPUP)3':(rAGGAGGAAA)5', where P=propynyl

Znosko, B.M., Barnes III, T.W., Krugh, T.R., Turner, D.H.

(2003) J Am Chem Soc 125: 6090-6097

Released	2003-06-10
Method	SOLUTION NMR
Macromolecule	5'-D(CP(5PC)P(PDU)P(5PC)P(5PC)P(PDU)P(PDU))-3' (nucleic acid) 5'-R(APAPAPGPGPAPGPGPA)-3' (nucleic acid)

Explore in 3D

1QES \| pdb_00001qes	Download File View File

TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES

Mcdowell, J.A., He, L., Chen, X., Turner, D.H.

(1997) Biochemistry 36: 8030-8038

Released	1997-06-05
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPAPGPUPUPCPC)-3') (nucleic acid)

Explore in 3D

1QET \| pdb_00001qet	Download File View File

TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES

Mcdowell, J.A., He, L., Chen, X., Turner, D.H.

(1997) Biochemistry 36: 8030-8038

Released	1997-06-05
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPAPUPGPUPCPC)-3') (nucleic acid)

Explore in 3D

1TUT \| pdb_00001tut	Download File View File

J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns

Znosko, B.M., Kennedy, S.D., Wille, P.C., Krugh, T.R., Turner, D.H.

(2004) Biochemistry 43: 15822-15837

Released	2004-12-28
Method	SOLUTION NMR
Macromolecule	5'-R(GPAPGPGPAPAPGPGPCPGPA)-3' (nucleic acid) 5'-R(UPCPGPUPUPAPAPUPCPUPC)-3' (nucleic acid)

Explore in 3D

1XV0 \| pdb_00001xv0	Download File View File

Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG

Chen, G., Znosko, B.M., Kennedy, S.D., Krugh, T.R., Turner, D.H.

(2005) Biochemistry 44: 2845-2856

Released	2004-11-09
Method	SOLUTION NMR
Macromolecule	5'-R(GPCPCPGPAPAPGPCPCP(P5P)-3' (nucleic acid) 5'-R(GPGPUPGPGPAPGPGPCPU)-3' (nucleic acid)

Explore in 3D

1YFV \| pdb_00001yfv	Download File View File

STRUCTURE OF (5'-R(GPGPCPGPAPGPCP*C)-3')2 BY 2-D NMR, 1 STRUCTURE

Santalucia Junior, J., Turner, D.H.

(1993) Biochemistry 32: 12612-12623

Released	1997-10-15
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(GPGPCPGPAPGPCP*C)-3') (nucleic acid)

Explore in 3D

2DD1 \| pdb_00002dd1	Download File View File

Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG

Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.

(2006) Biochemistry 45: 6889-6903

Released	2006-06-13
Method	SOLUTION NMR
Macromolecule	5'-R(GPCPCPGPAPAPAPCPCP(P5P))-3' (nucleic acid) 5'-R(GPGPUPGPGPAPGPGPCPU)-3' (nucleic acid)

Explore in 3D

2DD2 \| pdb_00002dd2	Download File View File

An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack

Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.

(2006) Biochemistry 45: 6889-6903

Released	2006-06-13
Method	SOLUTION NMR
Macromolecule	5'-R(GPCPCPGPAPAPGPCPCP(P5P))-3' (nucleic acid) 5'-R(GPGPUPGPAPAPGPGPCPU)-3' (nucleic acid)

Explore in 3D

2DD3 \| pdb_00002dd3	Download File View File

An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack

Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.

(2006) Biochemistry 45: 6889-6903

Released	2006-06-13
Method	SOLUTION NMR
Macromolecule	5'-R(GPCPCPGPAPAPGPCPCP(P5P))-3' (nucleic acid) 5'-R(GPGPUPGPAPAPGPGPCPU)-3' (nucleic acid)

Explore in 3D

2G3S \| pdb_00002g3s	Download File View File

RNA structure containing GU base pairs

Jang, S.B., Hung, L.W., Jeong, M.S., Holbrook, E.L., Chen, X., Turner, D.H., Holbrook, S.R.

(2006) Biophys J 90: 4530-4537

Released	2007-01-16
Method	X-RAY DIFFRACTION 1.499 Å
Organisms	synthetic construct
Macromolecule	5'-R(GPGPCPGPUPGPCPC)-3' (nucleic acid)
Unique Ligands	MG

Explore in 3D

2KXZ \| pdb_00002kxz	Download File View File

The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA

Hammond, N.B., Kennedy, S.D., Turner, D.H.

(2010) Biochemistry 49: 5817-5827

Released	2010-06-02
Method	SOLUTION NMR
Macromolecule	5'-R(GPAPCPAPAPGPUPGPUPCP*A)-3' (nucleic acid)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

1EKA | pdb_00001eka

1EKD | pdb_00001ekd

1F5G | pdb_00001f5g

1F5H | pdb_00001f5h

1G3A | pdb_00001g3a

1GUC | pdb_00001guc

1MIS | pdb_00001mis

1MUV | pdb_00001muv

1MV1 | pdb_00001mv1

1MV2 | pdb_00001mv2

1MV6 | pdb_00001mv6

1MWG | pdb_00001mwg

1NTQ | pdb_00001ntq

1NTS | pdb_00001nts

1NTT | pdb_00001ntt

1QES | pdb_00001qes

1QET | pdb_00001qet

1TUT | pdb_00001tut

1XV0 | pdb_00001xv0

1YFV | pdb_00001yfv

2DD1 | pdb_00002dd1

2DD2 | pdb_00002dd2

2DD3 | pdb_00002dd3

2G3S | pdb_00002g3s

2KXZ | pdb_00002kxz