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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Wu, X."

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Search Summary

This query matches 161 Structures.

Refinements

Structure Determination Methodology

experimental (161)

Scientific Name of Source Organism

	Homo sapiens (89)
	Saccharomyces cerevisiae S288C (14)
	Saccharomyces cerevisiae (7)
	synthetic construct (7)
	Geobacillus thermodenitrificans NG80-2 (6)
	Bacillus subtilis subsp. subtilis str. 168 (5)
	Caulobacter vibrioides NA1000 (5)
	Escherichia coli K-12 (5)
	Lama glama (5)
	Human immunodeficiency virus type 1 (BRU ISOLATE) (4)

More...

Taxonomy

	Eukaryota (123)
	Bacteria (28)
	Riboviria (16)
	other sequences (7)
	Varidnaviria (4)
	unclassified sequences (3)
	Duplodnaviria (2)
	Archaea (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (121)
	ELECTRON MICROSCOPY (37)
	SOLUTION NMR (2)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (161)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (44)
	2.0 - 2.5 (26)
	2.5 - 3.0 (33)
	3.0 - 3.5 (21)
	3.5 - 4.0 (10)
	4.0 - 4.5 (5)
	> 4.5 (6)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (1)
	2005 - 2009 (16)
	2010 - 2014 (41)
	2015 - 2019 (17)
	2020 - 2024 (75)
	2025 - 2029 (9)

Enzyme Classification Name

	Transferases (34)
	Hydrolases (31)
	Translocases (13)
	Oxidoreductases (7)
	Lyases (6)
	Ligases (2)

Membrane Protein Annotation

	PDBTM (26)
	MemProtMD (23)
	OPM (19)
	mpstruc (14)

Symmetry Type

	Asymmetric (110)
	Cyclic (45)
	Dihedral (5)
	Helical (5)

SCOP Classification

	All beta proteins (26)
	Alpha and beta proteins (a/b) (9)
	Alpha and beta proteins (a+b) (7)
	All alpha proteins (6)
	Artifacts (5)
	Peptides (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 161 Structures

Page 1 of 7

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1CKA \| pdb_00001cka	Download File View File

STRUCTURAL BASIS FOR THE SPECIFIC INTERACTION OF LYSINE-CONTAINING PROLINE-RICH PEPTIDES WITH THE N-TERMINAL SH3 DOMAIN OF C-CRK

Wu, X., Kuriyan, J.

(1995) Structure 3: 215-226

Released	1995-05-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus
Macromolecule	C-CRK N-TERMINAL SH3 DOMAIN (protein) C3G PEPTIDE (PRO-PRO-PRO-ALA-LEU-PRO-PRO-LYS-LYS-ARG) (protein)

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1CKB \| pdb_00001ckb	Download File View File

STRUCTURAL BASIS FOR THE SPECIFIC INTERACTION OF LYSINE-CONTAINING PROLINE-RICH PEPTIDES WITH THE N-TERMINAL SH3 DOMAIN OF C-CRK

Wu, X., Kuriyan, J.

(1995) Structure 3: 215-226

Released	1995-05-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	C-CRK N-TERMINAL SH3 DOMAIN (protein) SOS PEPTIDE (PRO-PRO-PRO-VAL-PRO-PRO-ARG-ARG-ARG-ARG) (protein)

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1ZW5 \| pdb_00001zw5	Download File View File

X-ray structure of Farnesyl diphosphate synthase protein

Kavanagh, K.L., Guo, K., Wu, X., von Delft, F., Arrowsmith, C., Sundstrom, M., Edwards, A., Oppermann, U., Structural Genomics Consortium (SGC)

(2006) Proc Natl Acad Sci U S A 103: 7829-7834

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	farnesyl diphosphate synthase (protein)
Unique Ligands	IPE, MG, ZOL

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1ZX1 \| pdb_00001zx1	Download File View File

Human quinone oxidoreductase 2 (NQO2) in complex with the cytostatic prodrug CB1954

Jansson, A., Wu, X., Kavanagh, K., Kerr, D., Knox, R., Walton, R., Gunther, U., Ludwig, C., Edwards, A., Arrowsmith, C., Sundstrom, M., von Delft, F., Oppermann, U., Structural Genomics Consortium (SGC)

To be published

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Homo sapiens
Macromolecule	NRH dehydrogenase [quinone] 2 (protein)
Unique Ligands	CB1, FAD, ZN

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1ZY6 \| pdb_00001zy6	Download File View File

Membrane-bound dimer structure of Protegrin-1 (PG-1), a beta-Hairpin Antimicrobial Peptide in Lipid Bilayers from Rotational-Echo Double-Resonance Solid-State NMR

Wu, X., Mani, R., Tang, M., Buffy, J.J., Waring, A.J., Sherman, M.A., Hong, M.

(2006) Biochemistry 45: 8341-8349

Released	2006-06-13
Method	SOLID-STATE NMR
Organisms	Sus scrofa
Macromolecule	Protegrin 1 (protein)

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2BEL \| pdb_00002bel	Download File View File

Structure of human 11-beta-hydroxysteroid dehydrogenase in complex with NADP and carbenoxolone

Kavanagh, K., Wu, X., Svensson, S., Elleby, B., von Delft, F., Debreczeni, J.E., Sharma, S., Bray, J., Edwards, A., Arrowsmith, C., Sundstrom, M., Abrahmsen, L., Oppermann, U.

To be published

Released	2004-12-06
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	CORTICOSTEROID 11-BETA-DEHYDROGENASE ISOZYME 1 (protein)
Unique Ligands	CBO, CL, NAP

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2BYD \| pdb_00002byd	Download File View File

Structure of aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase

Bunkoczi, G., Wu, X., Dubinina, E., Johansson, C., Smee, C., Turnbull, A., Oppermann, U., von Delft, F., Arrowsmith, C., Edwards, A., Sundstrom, M., Weigelt, J.

(2007) Chem Biol 14: 1243-1253

Released	2005-08-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HSPC223 (protein)
Unique Ligands	BR

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2C2N \| pdb_00002c2n	Download File View File

Structure of human mitochondrial malonyltransferase

Wu, X., Bunkoczi, G., Smee, C., Arrowsmith, C., Sundstrom, M., Weigelt, J., Edwards, A., von Delft, F., Oppermann, U.

(2009) Chem Biol 16: 667

Released	2006-01-18
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE (protein)
Unique Ligands	AE3, AE4, CL, DXE, SO4

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2C43 \| pdb_00002c43	Download File View File

STRUCTURE OF AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE- PHOSPHOPANTETHEINYL TRANSFERASE IN COMPLEX WITH COENZYME A

Bunkoczi, G., Wu, X., Dubinina, E., Johansson, C., Smee, C., Turnbull, A., von Delft, F., Arrowsmith, C., Edwards, A., Sundstrom, M., Weigelt, J., Oppermann, U.

(2007) Chem Biol 14: 1243-1253

Released	2005-10-24
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	AMINOADIPATE-SEMIALDEHYDE DEHYDROGENASE-PHOSPHOPANTETHEINYL TRANSFERASE (protein)
Unique Ligands	CL, COA, MG

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2C9H \| pdb_00002c9h	Download File View File

Structure of mitochondrial beta-ketoacyl synthase

Bunkoczi, G., Wu, X., Smee, C., Gileadi, O., Arrowsmith, C., Edwards, A., Sundstrom, M., Weigelt, J., von Delft, F., Oppermann, U.

To be published

Released	2005-12-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	MITOCHONDRIAL BETA-KETOACYL SYNTHASE (protein)
Unique Ligands	NI

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2IC1 \| pdb_00002ic1	Download File View File

Crystal Structure of Human Cysteine Dioxygenase in Complex with Substrate Cysteine

Ye, S., Wu, X., Wei, L., Tang, D., Sun, P., Rao, Z.

(2007) J Biological Chem 282: 3391-3402

Released	2006-12-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Cysteine dioxygenase type 1 (protein)
Unique Ligands	CYS, FE2

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2JFD \| pdb_00002jfd	Download File View File

Structure of the MAT domain of human FAS

Bunkoczi, G., Kavanagh, K., Hozjan, V., Rojkova, A., Wu, X., Arrowsmith, C.H., Edwards, A., Sundstrom, M., Weigelt, J., Smith, S., Oppermann, U.

(2009) Chem Biol 16: 667-675

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens
Macromolecule	FATTY ACID SYNTHASE (protein)

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2JFK \| pdb_00002jfk	Download File View File

Structure of the MAT domain of human FAS with malonyl-CoA

Bunkoczi, G., Kavanagh, K., Hozjan, V., Rojkova, A., Watt, S., Wu, X., Arrowsmith, C.H., Edwards, A., Sundstrom, M., Weigelt, J., Smith, S., Oppermann, U.

To be published

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	FATTY ACID SYNTHASE (protein)
Unique Ligands	COA

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2XYE \| pdb_00002xye	Download File View File

HIV-1 Inhibitors with a Tertiary-Alcohol-containing Transition-State Mimic and various P2 and P1 prime Substituents

Ohrngren, P., Wu, X., Persson, M., Ekegren, J.K., Wallberg, H., Rosenquist, A., Samuelsson, B., Unge, T., Larhed, M.

(2011) Medchemcomm 2: 701

Released	2011-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)
Macromolecule	PROTEASE (protein)
Unique Ligands	CXG

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2XYF \| pdb_00002xyf	Download File View File

HIV-1 Inhibitors with a Tertiary-Alcohol-containing Transition-State Mimic and various P2 and P1 prime Substituents

Ohrngren, P., Wu, X., Persson, M., Ekegren, J.K., Wallberg, H., Rosenquist, A., Samuelsson, B., Unge, T., Larhed, M.

(2011) Medchemcomm 2: 701

Released	2011-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)
Macromolecule	PROTEASE (protein)
Unique Ligands	G40

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3GCG \| pdb_00003gcg	Download File View File

crystal structure of MAP and CDC42 complex

Chai, J., Huang, Z., Feng, Y., Wu, X.

(2009) Nat Struct Mol Biol 16: 853-860

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Cell division control protein 42 homolog (protein) L0028 (Mitochondria associated protein) (protein)

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3HI1 \| pdb_00003hi1	Download File View File

Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105

Kwon, Y.D., Chen, L., Zhou, T., Wu, X., O'Dell, S., Cavacini, L., Hessell, A.J., Pancera, M., Tang, M., Xu, L., Yang, Z., Zhang, M.-Y., Arthos, J., Burton, D.R., Dimitrov, D., Nabel, G.J., Posner, M., Sodroski, J., Wyatt, R., Mascola, J.R., Kwong, P.D.

(2009) Science 326: 1123-1127

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (isolate YU2)
Macromolecule	F105 Heavy Chain (protein) F105 Light Chain (protein) Glycoprotein 120 (protein)
Unique Ligands	NAG

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3IDX \| pdb_00003idx	Download File View File

Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222

Chen, L., Kwon, Y.D., Zhou, T., Wu, X., O'Dell, S., Cavacini, L., Hessell, A.J., Pancera, M., Tang, M., Xu, L., Yang, Z.Y., Zhang, M.Y., Arthos, J., Burton, D.R., Dimitrov, D.S., Nabel, G.J., Posner, M., Sodroski, J., Wyatt, R., Mascola, J.R., Kwong, P.D.

(2009) Science 326: 1123-1127

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Fab b13 heavy chain (protein) Fab b13 light chain (protein) HIV-1 HxBc2 gp120 core (protein)
Unique Ligands	EPE, GOL, NAG, SO4

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3IDY \| pdb_00003idy	Download File View File

Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221

(2009) Science 326: 1123-1127

Released	2009-11-17
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Fab b13 heavy chain (protein) Fab b13 light chain (protein) HIV-1 HxBc2 gp120 core (protein)
Unique Ligands	NAG, SO4

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3JU5 \| pdb_00003ju5	Download File View File

Crystal Structure of Dimeric Arginine Kinase at 1.75-A Resolution

Wu, X., Ye, S., Guo, S., Yan, W., Bartlam, M., Rao, Z.

(2010) FASEB J 24: 242-252

Released	2009-09-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Apostichopus japonicus
Macromolecule	Arginine kinase (protein)
Unique Ligands	MG

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3JU6 \| pdb_00003ju6	Download File View File

Crystal Structure of Dimeric Arginine Kinase in Complex with AMPPNP and Arginine

Wu, X., Ye, S., Guo, S., Yan, W., Bartlam, M., Rao, Z.

(2010) FASEB J 24: 242-252

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Apostichopus japonicus
Macromolecule	Arginine kinase (protein)
Unique Ligands	ANP, ARG

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3QA8 \| pdb_00003qa8	Download File View File

Crystal Structure of inhibitor of kappa B kinase beta

Xu, G., Lo, Y.C., Li, Q., Napolitano, G., Wu, X., Jiang, X., Dreano, M., Karin, M., Wu, H.

(2011) Nature 472: 325-330

Released	2011-04-06
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Xenopus laevis
Macromolecule	MGC80376 protein (protein)

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3R0M \| pdb_00003r0m	Download File View File

Crystal structure of anti-HIV llama VHH antibody A12

Chen, L., McLellan, J.S., Kwon, Y.D., Schmidt, S., Wu, X., Zhou, T., Yang, Y., Zhang, B., Forsman, A., Weiss, R.A., Verrips, T., Mascola, J., Kwong, P.D.

To be published

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lama glama
Macromolecule	Llama VHH A12 (protein)
Unique Ligands	SO4

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3RJQ \| pdb_00003rjq	Download File View File

Crystal structure of anti-HIV llama VHH antibody A12 in complex with C186 gp120

Chen, L., McLellan, J.S., Kwon, Y.D., Schmidt, S., Wu, X., Zhou, T., Yang, Y., Zhang, B., Forsman, A., Weiss, R.A., Verrips, T., Mascola, J., Kwong, P.D.

To be published

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	HIV-1 M:B_HXB2R Lama glama
Macromolecule	C186 gp120 (protein) Llama VHH A12 (protein)
Unique Ligands	NAG