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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dodson, E.J."

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Search Summary

This query matches 270 Structures.

Refinements

Structure Determination Methodology

experimental (270)

Scientific Name of Source Organism

	Homo sapiens (49)
	Sus scrofa (32)
	Salmonella enterica subsp. enterica serovar Typhimurium (31)
	Bacillus amyloliquefaciens (23)
	Escherichia coli (21)
	Geobacillus stearothermophilus (11)
	Kitasatospora aureofaciens (10)
	Bos taurus (7)
	synthetic construct (6)
	Bacillus subtilis (5)

More...

Taxonomy

	Bacteria (148)
	Eukaryota (103)
	Eukaryota (eukaryotes) (12)
	other sequences (6)
	Archaea (1)
	Duplodnaviria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (269)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (266)
	DNA (6)
	RNA (5)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (30)
	1.5 - 2.0 (105)
	2.0 - 2.5 (95)
	2.5 - 3.0 (33)
	3.0 - 3.5 (5)

Release Date

	1980 - 1984 (2)
	1990 - 1994 (50)
	1995 - 1999 (87)
	2000 - 2004 (45)
	2005 - 2009 (38)
	2010 - 2014 (17)
	2015 - 2019 (6)
	2020 - 2024 (22)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (78)
	Oxidoreductases (16)
	Transferases (14)
	Lyases (15)
	Isomerases (8)
	Translocases (1)

Membrane Protein Annotation

OPM (3)

Symmetry Type

	Asymmetric (187)
	Cyclic (76)
	Dihedral (54)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (66)
	Small proteins (44)
	All beta proteins (20)
	Alpha and beta proteins (a/b) (64)
	All alpha proteins (23)
	Artifacts (9)
	Coiled coil proteins (1)
	Peptides (2)

AllSelected

1 to 25 of 270 Structures

Page 1 of 11

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182D \| pdb_0000182d	Download File View File

DNA-NOGALAMYCIN INTERACTIONS: THE CRYSTAL STRUCTURE OF D(TGATCA) COMPLEXED WITH NOGALAMYCIN

Smith, C.K., Davies, G.J., Dodson, E.J., Moore, M.H.

(1995) Biochemistry 34: 415-425

Released	1994-11-30
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	DNA (5'-D(TPGPAPTPCPA)-3') (nucleic acid)
Unique Ligands	NGM

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1AI4 \| pdb_00001ai4	Download File View File

PENICILLIN ACYLASE COMPLEXED WITH 3,4-DIHYDROXYPHENYLACETIC ACID

Done, S.H.

(1998) J Mol Biology 284: 463-475

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN AMIDOHYDROLASE (protein)
Unique Ligands	CA, DHY

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1AI5 \| pdb_00001ai5	Download File View File

PENICILLIN ACYLASE COMPLEXED WITH M-NITROPHENYLACETIC ACID

Done, S.H.

(1998) J Mol Biology 284: 463-475

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN AMIDOHYDROLASE (protein)
Unique Ligands	CA, MNP

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1AI6 \| pdb_00001ai6	Download File View File

PENICILLIN ACYLASE WITH P-HYDROXYPHENYLACETIC ACID

Done, S.H.

(1998) J Mol Biology 284: 463-475

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN AMIDOHYDROLASE (protein)
Unique Ligands	4HP, CA

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1AI7 \| pdb_00001ai7	Download File View File

PENICILLIN ACYLASE COMPLEXED WITH PHENOL

Done, S.H.

(1998) J Mol Biology 284: 463-475

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN AMIDOHYDROLASE (protein)
Unique Ligands	CA, IPH

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1AJN \| pdb_00001ajn	Download File View File

PENICILLIN ACYLASE COMPLEXED WITH P-NITROPHENYLACETIC ACID

Done, S.H.

(1998) J Mol Biology 284: 463-475

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN AMIDOHYDROLASE (protein)
Unique Ligands	AAN, CA

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1AJP \| pdb_00001ajp	Download File View File

PENICILLIN ACYLASE COMPLEXED WITH 2,5-DIHYDROXYPHENYLACETIC ACID

Done, S.H.

(1998) J Mol Biology 284: 463-475

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN AMIDOHYDROLASE (protein)
Unique Ligands	CA, OMD

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1AJQ \| pdb_00001ajq	Download File View File

PENICILLIN ACYLASE COMPLEXED WITH THIOPHENEACETIC ACID

Done, S.H.

(1998) J Mol Biology 284: 463-475

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN AMIDOHYDROLASE (protein)
Unique Ligands	CA, SPA

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1AL3 \| pdb_00001al3	Download File View File

COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES

Verschueren, K.H.G., Tyrrell, R., Wilkinson, A.J.

(1997) Structure 5: 1017-1032

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Klebsiella aerogenes
Macromolecule	CYS REGULON TRANSCRIPTIONAL ACTIVATOR CYSB (protein)
Unique Ligands	SO4

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1APH \| pdb_00001aph	Download File View File

CONFORMATIONAL CHANGES IN CUBIC INSULIN CRYSTALS IN THE PH RANGE 7-11

Gursky, O., Badger, J., Li, Y., Caspar, D.L.D.

(1992) Biophys J 63: 1210-1220

Released	1993-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	INSULIN A CHAIN (PH 7) (protein) INSULIN B CHAIN (PH 7) (protein)
Unique Ligands	DCE

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1AQZ \| pdb_00001aqz	Download File View File

CRYSTAL STRUCTURE OF A HIGHLY SPECIFIC ASPERGILLUS RIBOTOXIN, RESTRICTOCIN

Yang, X., Moffat, K.

(1996) Structure 4: 837-852

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus restrictus
Macromolecule	RESTRICTOCIN (protein)
Unique Ligands	PO4

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1AX4 \| pdb_00001ax4	Download File View File

TRYPTOPHANASE FROM PROTEUS VULGARIS

Isupov, M.N., Antson, A.A., Dodson, E.J., Dodson, G.G., Dementieva, I.S., Zakomirdina, L.N., Wilson, K.S., Dauter, Z., Lebedev, A.A., Harutyunyan, E.H.

(1998) J Mol Biology 276: 603-623

Released	1998-01-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Proteus vulgaris
Macromolecule	TRYPTOPHANASE (protein)
Unique Ligands	K

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1B05 \| pdb_00001b05	Download File View File

Structure of oligo-peptide binding protein complexed with LYS-CYS-LYS

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1998-11-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PEPTIDE LYS-CYS-LYS (protein) PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN (protein)
Unique Ligands	U1

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1B17 \| pdb_00001b17	Download File View File

PH AFFECTS GLU B13 SWITCHING AND SULFATE BINDING IN CUBIC INSULIN CRYSTALS (PH 5.00 COORDINATES)

Diao, J.S., Caspar, D.L.D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 670-676

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (INSULIN A chain) (protein) PROTEIN (INSULIN b chain) (protein)
Unique Ligands	SO4

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1B18 \| pdb_00001b18	Download File View File

PH AFFECTS GLU B13 SWITCHING AND SULFATE BINDING IN CUBIC INSULIN CRYSTALS (PH 5.53 COORDINATES)

Diao, J.S., Caspar, D.L.D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 670-676

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (INSULIN a chain) (protein) PROTEIN (INSULIN b chain) (protein)
Unique Ligands	SO4

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1B19 \| pdb_00001b19	Download File View File

PH AFFECTS GLU B13 SWITCHING AND SULFATE BINDING IN CUBIC INSULIN CRYSTALS (PH 5.80 COORDINATES)

Diao, J.S., Caspar, D.L.D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 670-676

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (INSULIN A CHAIN) (protein) PROTEIN (INSULIN B CHAIN) (protein)
Unique Ligands	SO4

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1B1H \| pdb_00001b1h	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX

Davies, T.G., Tame, J.R.H.

(1999) Protein Sci 8: 1432-1444

Released	1998-11-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS HPE LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B20 \| pdb_00001b20	Download File View File

DELETION OF A BURIED SALT-BRIDGE IN BARNASE

Vaughan, C.K., Harryson, P., Buckle, A.M., Oliveberg, M., Fersht, A.R.

(2002) Acta Crystallogr D Biol Crystallogr 58: 591-600

Released	1998-12-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	PROTEIN (BARNASE) (protein)
Unique Ligands	ZN

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1B21 \| pdb_00001b21	Download File View File

DELETION OF A BURIED SALT BRIDGE IN BARNASE

Vaughan, C.K., Harryson, P., Buckle, A.M., Oliveberg, M., Fersht, A.R.

(2002) Acta Crystallogr D Biol Crystallogr 58: 591-600

Released	1998-12-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	PROTEIN (BARNASE) (protein)
Unique Ligands	ZN

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1B27 \| pdb_00001b27	Download File View File

STRUCTURAL RESPONSE TO MUTATION AT A PROTEIN-PROTEIN INTERFACE

Vaughan, C.K., Buckle, A.M., Fersht, A.R.

(1999) J Mol Biology 286: 1487-1506

Released	1998-12-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	PROTEIN (BARNASE) (protein) PROTEIN (BARSTAR) (protein)

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1B2A \| pdb_00001b2a	Download File View File

PH AFFECTS GLU B13 SWITCHING AND SULFATE BINDING IN CUBIC INSULIN CRYSTALS (PH 6.00 COORDINATES)

Diao, J.S., Caspar, D.L.D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 670-676

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (INSULIN A CHAIN) (protein) PROTEIN (INSULIN B CHAIN) (protein)
Unique Ligands	SO4

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1B2B \| pdb_00001b2b	Download File View File

PH AFFECTS GLU B13 SWITCHING AND SULFATE BINDING IN CUBIC INSULIN CRYSTALS (PH 6.16 COORDINATES)

Diao, J.S., Caspar, D.L.D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 670-676

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (INSULIN A CHAIN) (protein) PROTEIN (INSULIN B CHAIN) (protein)
Unique Ligands	SO4

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1B2C \| pdb_00001b2c	Download File View File

PH AFFECTS GLU B13 SWITCHING AND SULFATE BINDING IN CUBIC INSULIN CRYSTALS (PH 6.26 COORDINATES)

Diao, J.S., Caspar, D.L.D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 670-676

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (INSULIN A CHAIN) (protein) PROTEIN (INSULIN B CHAIN) (protein)
Unique Ligands	SO4

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1B2D \| pdb_00001b2d	Download File View File

PH AFFECTS GLU B13 SWITCHING AND SULFATE BINDING IN CUBIC INSULIN CRYSTALS (PH 6.35 COORDINATES)

Diao, J.S., Caspar, D.L.D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 670-676

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (INSULIN A CHAIN) (protein) PROTEIN (INSULIN B CHAIN) (protein)
Unique Ligands	SO4

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1B2E \| pdb_00001b2e	Download File View File

PH AFFECTS GLU B13 SWITCHING AND SULFATE BINDING IN CUBIC INSULIN CRYSTALS (PH 6.50 COORDINATES)

Diao, J.S., Caspar, D.L.D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 670-676

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (INSULIN a chain) (protein) PROTEIN (INSULIN b chain) (protein)
Unique Ligands	SO4

1 to 25 of 270 Structures

Page 1 of 11

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

182D | pdb_0000182d

1AI4 | pdb_00001ai4

1AI5 | pdb_00001ai5

1AI6 | pdb_00001ai6

1AI7 | pdb_00001ai7

1AJN | pdb_00001ajn

1AJP | pdb_00001ajp

1AJQ | pdb_00001ajq

1AL3 | pdb_00001al3

1APH | pdb_00001aph

1AQZ | pdb_00001aqz

1AX4 | pdb_00001ax4

1B05 | pdb_00001b05

1B17 | pdb_00001b17

1B18 | pdb_00001b18

1B19 | pdb_00001b19

1B1H | pdb_00001b1h

1B20 | pdb_00001b20

1B21 | pdb_00001b21

1B27 | pdb_00001b27

1B2A | pdb_00001b2a

1B2B | pdb_00001b2b

1B2C | pdb_00001b2c

1B2D | pdb_00001b2d

1B2E | pdb_00001b2e