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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dong, A."

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Search Summary

This query matches 447 Structures.

Refinements

Structure Determination Methodology

experimental (447)

Scientific Name of Source Organism

	Homo sapiens (296)
	Arabidopsis thaliana (21)
	Plasmodium falciparum 3D7 (14)
	Cryptosporidium parvum (11)
	synthetic construct (11)
	Pseudomonas aeruginosa (9)
	Cryptosporidium parvum Iowa II (8)
	Plasmodium yoelii (8)
	Plasmodium vivax (7)
	Agrobacterium fabrum str. C58 (5)

More...

Taxonomy

	Eukaryota (410)
	Bacteria (26)
	other sequences (11)
	Duplodnaviria (5)
	Archaea (4)
	Riboviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (445)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (447)
	DNA (19)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (20)
	1.5 - 2.0 (194)
	2.0 - 2.5 (172)
	2.5 - 3.0 (50)
	3.0 - 3.5 (9)

Release Date

	2000 - 2004 (12)
	2005 - 2009 (108)
	2010 - 2014 (99)
	2015 - 2019 (104)
	2020 - 2024 (118)
	2025 - 2029 (6)

Enzyme Classification Name

	Transferases (190)
	Hydrolases (55)
	Ligases (17)
	Oxidoreductases (12)
	Isomerases (6)
	Lyases (6)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (284)
	Cyclic (166)
	Dihedral (26)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (87)
	All beta proteins (48)
	All alpha proteins (22)
	Artifacts (36)
	Alpha and beta proteins (a+b) (27)
	Small proteins (4)
	Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 25 of 447 Structures

Page 1 of 18

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1FJX \| pdb_00001fjx	Download File View File

STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCY

Vilkaitis, G., Dong, A., Weinhold, E., Cheng, X., Klimasauskas, S.

(2000) J Biological Chem 275: 38722-38730

Released	2000-12-15
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Haemophilus haemolyticus
Macromolecule	HHAI DNA METHYLTRANSFERASE (protein) DNA (5'-D(TPGPAPTPAPGPCPGPCPTPAPTP*C)-3') (nucleic acid)
Unique Ligands	SAH, SO4

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1G55 \| pdb_00001g55	Download File View File

Structure of human DNMT2, an enigmatic DNA methyltransferase homologue

Dong, A., Yoder, J.A., Zhang, X., Zhou, L., Bestor, T.H., Cheng, X.

(2001) Nucleic Acids Res 29: 439-448

Released	2001-01-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DNA CYTOSINE METHYLTRANSFERASE DNMT2 (protein)
Unique Ligands	BME, GOL, SAH, SO4

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1J70 \| pdb_00001j70	Download File View File

CRYSTAL STRUCTURE OF YEAST ATP SULFURYLASE

Lalor, D.J., Schnyder, T., Saridakis, V., Pilloff, D.E., Dong, A., Tang, H., Leyh, T.S., Pai, E.F.

(2003) Protein Eng 16: 1071-1079

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP SULPHURYLASE (protein)
Unique Ligands	NA, PO4

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1LVW \| pdb_00001lvw	Download File View File

Crystal structure of glucose-1-phosphate thymidylyltransferase, RmlA, complex with dTDP

Dong, A., Christendat, D., Pai, E.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2003-07-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	glucose-1-phosphate thymidylyltransferase (protein)
Unique Ligands	CL, GOL, SO4, TYD

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1Q0S \| pdb_00001q0s	Download File View File

Binary Structure of T4DAM with AdoHcy

Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.

(2003) Nat Struct Biol 10: 849-855

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein)
Unique Ligands	SAH

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1Q0T \| pdb_00001q0t	Download File View File

Ternary Structure of T4DAM with AdoHcy and DNA

Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.

(2003) Nat Struct Biol 10: 849-855

Released	2003-09-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(APCPAPGPGPAPTPCPCPTPGPT)-3' (nucleic acid)
Unique Ligands	IOD, SAH

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1R6X \| pdb_00001r6x	Download File View File

The Crystal Structure of a Truncated Form of Yeast ATP Sulfurylase, Lacking the C-Terminal APS Kinase-like Domain, in complex with Sulfate

Lalor, D.J., Schnyder, T., Saridakis, V., Pilloff, D.E., Dong, A., Tang, H., Leyh, T.S., Pai, E.F.

(2003) Protein Eng 16: 1071-1079

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP:sulfate adenylyltransferase (protein)
Unique Ligands	CO, SO4

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1SVU \| pdb_00001svu	Download File View File

Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions

Dong, A., Zhou, L., Zhang, X., Stickel, S., Roberts, R.J., Cheng, X.

(2004) Biol Chem 385: 373-379

Released	2004-06-29
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Haemophilus haemolyticus
Macromolecule	Modification methylase HhaI (protein)
Unique Ligands	SAH, SO4, UNX

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1T1J \| pdb_00001t1j	Download File View File

Crystal structure of genomics APC5043

Dong, A., Xu, X., Liu, Y., Zhang, R., Savchenko, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	hypothetical protein (protein)

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1TXJ \| pdb_00001txj	Download File View File

Crystal structure of translationally controlled tumour-associated protein (TCTP) from Plasmodium knowlesi

Walker, J.R., Vedadi, M., Sharma, S., Houston, S., Lew, J., Amani, M., Wasney, G., Skarina, T., Bray, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Hui, R., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2004-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium knowlesi
Macromolecule	translationally controlled tumour-associated protein (TCTP) from Plasmodium knowlesi, PKN_PFE0545c (protein)

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1U8K \| pdb_00001u8k	Download File View File

Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide LELDKWASL

Bryson, S., Julien, J.-P., Pai, E.F.

To be published

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIBODY 2F5 (HEAVY CHAIN) (protein) ANTIBODY 2F5 (LIGHT CHAIN) (protein) GP41 PEPTIDE (protein)

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1XCC \| pdb_00001xcc	Download File View File

1-Cys peroxidoxin from Plasmodium Yoelli

Vedadi, M., Sharma, S., Houston, S., Lew, J., Wasney, G., Amani, M., Xu, X., Bray, J., Sundstrom, M., Arrowsmith, C., Edwards, A., Hui, R., Bochkarev, A., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2004-11-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Plasmodium yoelii
Macromolecule	1-Cys peroxiredoxin (protein)

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1Y6Z \| pdb_00001y6z	Download File View File

Middle domain of Plasmodium falciparum putative heat shock protein PF14_0417

Lunin, V.V., Botchkareva, E., Loppnau, P., Amani, M., Bray, J., Vedadi, M., Edwards, A., Arrowsmith, C., Sundstrom, M., Bochkarev, A., Hui, R., Plotnikova, O., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-02-08
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	heat shock protein, putative (protein)

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1YF3 \| pdb_00001yf3	Download File View File

T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact

Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.

(2005) Cell 121: 349-361

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(APCPCPAPTPGPAPTPCPTPGPAPC)-3' (nucleic acid) 5'-D(TPGPTPCPAPGPAPTPCPAPTPGPG)-3' (nucleic acid)
Unique Ligands	GOL, SAH

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1YFJ \| pdb_00001yfj	Download File View File

T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact

Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.

(2005) Cell 121: 349-361

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(TPCPAPCPAPGPGPAPTPCPCPTPGPTP*G)-3' (nucleic acid)
Unique Ligands	CA, CL, SAH

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1YFL \| pdb_00001yfl	Download File View File

T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base

Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.

(2005) Cell 121: 349-361

Released	2005-05-17
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(PTPCPAPCPAPGPGPAPTPCPCPTPGPTPGPA)-3' (nucleic acid)
Unique Ligands	SFG

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1YNB \| pdb_00001ynb	Download File View File

crystal structure of genomics APC5600

Dong, A., Skarina, T., Savchenko, A., Pai, E.F., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	hypothetical protein AF1432 (protein)

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1YOC \| pdb_00001yoc	Download File View File

Crystal Structure of genomics APC5556

Dong, A., Evdokimova, E., Kudritskam, M., Zhang, R.G., Yakunin, A., Pai, E., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	hypothetical protein PA1835 (protein)
Unique Ligands	GOL

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1YQE \| pdb_00001yqe	Download File View File

Crystal Structure of Conserved Protein of Unknown Function AF0625

Liu, Y., Skarina, T., Dong, A., Kudritskam, M., Savchenko, A., Pai, E.F., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Hypothetical UPF0204 protein AF0625 (protein)
Unique Ligands	POP

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1YXO \| pdb_00001yxo	Download File View File

Crystal Structure of pyridoxal phosphate biosynthetic protein PdxA PA0593

Liu, Y., Xu, X., Dong, A., Kudritskam, M., Savchenko, A., Pai, E.F., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	4-hydroxythreonine-4-phosphate dehydrogenase 1 (protein)
Unique Ligands	EOH, MG

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1Z4R \| pdb_00001z4r	Download File View File

Human GCN5 Acetyltransferase

Dong, A., Bernstein, G., Schuetz, A., Antoshenko, T., Wu, H., Loppnau, P., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Plotnikov, A., Structural Genomics Consortium (SGC)

(2007) Proteins 68: 403-407

Released	2005-03-29
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	General control of amino acid synthesis protein 5-like 2 (protein)
Unique Ligands	ACO