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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dore, A.S."

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Search Summary

This query matches 166 Structures.

Refinements

Structure Determination Methodology

experimental (166)

Scientific Name of Source Organism

	Homo sapiens (86)
	Mus musculus (24)
	Porphyromonas gingivalis (19)
	Lama glama (10)
	synthetic construct (7)
	Vatairea macrocarpa (6)
	Canavalia gladiata (5)
	Canavalia boliviana (4)
	Canavalia rosea (3)
	Porphyromonas endodontalis (3)

More...

Taxonomy

	Eukaryota (134)
	Bacteria (27)
	other sequences (7)
	Riboviria (3)
	Archaea (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (164)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (166)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (42)
	1.5 - 2.0 (66)
	2.0 - 2.5 (37)
	2.5 - 3.0 (14)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (11)
	2010 - 2014 (14)
	2015 - 2019 (60)
	2020 - 2024 (79)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (46)
	Oxidoreductases (22)
	Transferases (35)
	Isomerases (10)

Symmetry Type

	Asymmetric (73)
	Cyclic (73)
	Dihedral (23)

SCOP Classification

	Alpha and beta proteins (a+b) (19)
	All beta proteins (25)
	Artifacts (18)
	Alpha and beta proteins (a/b) (12)

AllSelected

1 to 25 of 166 Structures

Page 1 of 7

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1WUV \| pdb_00001wuv	Download File View File

Crystal structure of native Canavalia gladiata lectin (CGL): a tetrameric ConA-like lectin

Freitas, B.T., Delatorre, P., Moreno, F.B.M.B., Rocha, B.A.M., Souza, E.P., Canduri, F., Cardoso, A.L.H., Sampaio, A.H., Azevedo Jr., W.F., Cavada, B.S.

(2007) BMC Struct Biol 7: 52-52

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Canavalia gladiata
Macromolecule	Concanavalin A (protein)
Unique Ligands	CA, MN

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2D7F \| pdb_00002d7f	Download File View File

Crystal structure of A lectin from canavalia gladiata seeds complexed with alpha-methyl-mannoside and alpha-aminobutyric acid

Delatorre, P., Rocha, B.A.M., Souza, E.P., Freitas, B.T., Moreno, F.B.B.M., Sampaio, A.H., Azevedo Jr., W.F., Cavada, B.S.

(2007) BMC Struct Biol 7: 52-52

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Canavalia gladiata
Macromolecule	Concanavalin A (protein)
Unique Ligands	CA, DBB, MMA, MN

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2EF6 \| pdb_00002ef6	Download File View File

Canavalia gladiata lectin complexed with Man1-3Man-OMe

Moreno, F.B.M.B., Bezerra, G.A., Oliveira, T.M., de Souza, E.P., da Rocha, B.A.M., Benevides, R.G., Delatorre, P., Cavada, B.S., de Azevedo Jr., W.F.

(2007) J Struct Biol 160: 168-176

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Canavalia gladiata
Macromolecule	Concanavalin A (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN, MMA

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2EIG \| pdb_00002eig	Download File View File

Lotus tetragonolobus seed lectin (Isoform)

Moreno, F.B.M.B., Vicoti, M.M., Abrego, J.R.B., de Oliveira, T.M., Bezerra, G.A., Cavada, B.S., Filgueira de Azevedo Jr., W.

(2008) J Struct Biol 161: 133-143

Released	2008-03-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lotus tetragonolobus
Macromolecule	lectin (protein)
Unique Ligands	CA, MN, NAG

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2OVU \| pdb_00002ovu	Download File View File

Crystal structure of a lectin from Canavalia gladiata (CGL) in complex with man1-2man-OMe

Moreno, F.B.M.B., Bezerra, G.A., de Oliveira, T.M., de Souza, E.P., da Rocha, B.A.M., Benevides, R.G., Delatorre, P., Cavada, B.S., de Azevedo Jr., W.F.

(2007) J Struct Biol 160: 168-176

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Canavalia gladiata
Macromolecule	Canavalia gladiata lectin (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN, MMA

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2OW4 \| pdb_00002ow4	Download File View File

Crystal structure of a lectin from Canavalia maritima seeds (ConM) in complex with man1-2man-OMe

Moreno, F.B.M.B., Bezerra, G.A., de Oliveira, T.M., de Souza, E.M., da Rocha, B.A.M., Benevides, R.G., Delatorre, P., Cavada, B.S., de Azevedo Jr., W.F.

(2007) J Struct Biol 160: 168-176

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Canavalia rosea
Macromolecule	Canavalia maritima lectin (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN, MMA

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2P2K \| pdb_00002p2k	Download File View File

Crystal structure of a lectin from Canavalia gladiata seeds (CGL) in complex with man1-4man-OMe

Moreno, F.B.M.B., Bezerra, G.A., Oliveira, T.M., Souza, E.P., Rocha, B.A.M., Benevides, G.B., Delatorre, P., Cavada, B.S., de Azevedo Jr., W.F.

(2007) J Struct Biol 160: 168-176

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Canavalia gladiata
Macromolecule	Canavalia gladiata lectin (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN, MMA

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2P34 \| pdb_00002p34	Download File View File

Crystal structure of a lectin from Canavalia maritima seeds (CML) in complex with man1-4man-OMe

Moreno, F.B.M.B., Bezerra, G.A., Oliveira, T.M., Souza, E.P., Rocha, B.A.M., Benevides, R.G., Delatorre, P., Cavada, B.S., de Azevedo Jr., W.

(2007) J Struct Biol 160: 168-176

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Canavalia rosea
Macromolecule	Lectin (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN, MMA

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2P37 \| pdb_00002p37	Download File View File

Crystal structure of a lectin from Canavalia maritima seeds (CML) in complex with man1-3man-OMe

Moreno, F.B.M.B., Bezerra, G.A., Oliveira, T.M., Souza, E.P., Rocha, B.A.M., Benevides, R.G., Delatorre, P., Cavada, B.S., de Azevedo Jr., W.

(2007) J Struct Biol 160: 168-176

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Canavalia rosea
Macromolecule	Concanavalin A (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN, ZEL

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2ZBJ \| pdb_00002zbj	Download File View File

Crystal structure of Dioclea rostrata lectin

de Oliveira, T.M., Delatorre, P., da Rocha, B.A.M., de Sousa, E.P., Nascimento, K.S., Bezerra, G.A., Moura, T.R., Benevides, R.G., Bezerra, E.H.S., Moreno, F.B.M.B., Freire, V.N., de Azevedo Jr., W.F., Cavada, B.S.

(2008) J Struct Biol 164: 177-182

Released	2008-08-19
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Macropsychanthus bicolor
Macromolecule	Lectin alpha chain (protein)
Unique Ligands	CA, MN, PO4

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3AX4 \| pdb_00003ax4	Download File View File

Three-dimensional structure of lectin from Dioclea violacea and comparative vasorelaxant effects with Dioclea rostrata

Bezerra, M.J.B., Bezerra, G.A., Martins, J.L., Nascimento, K.S., Nagano, C.S., Gruber, K., Assereuy, A.M., Delatorre, P., Rocha, B.A.M., Cavada, B.S.

(2013) Int J Biochem Cell Biol 45: 807-815

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.613 Å
Organisms	Macropsychanthus violaceus
Macromolecule	lectin (protein)
Unique Ligands	CA, MN, XMM

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3FVY \| pdb_00003fvy	Download File View File

Crystal structure of human Dipeptidyl Peptidase III

Dong, A., Dobrovetsky, E., Seitova, A., Duncan, B., Crombet, L., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bochkarev, A., Cossar, D., Structural Genomics Consortium (SGC)

(2012) Proc Natl Acad Sci U S A 109: 6525-6530

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl-peptidase 3 (protein)
Unique Ligands	CL, MG, ZN

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3JU9 \| pdb_00003ju9	Download File View File

Crystal structure of a lectin from Canavalia brasiliensis seed (ConBr) complexed with alpha-aminobutyric acid

Bezerra, E.H.S., Rocha, B.A.M., Nagano, C.S., Bezerra, G.A., Moura, T.R., Bezerra, M.J.B., Benevides, R.G., Marinho, E.S., Delatorre, P., Cavada, B.S.

(2011) Biochem Biophys Res Commun 408: 566-570

Released	2010-12-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Canavalia brasiliensis
Macromolecule	Concanavalin-Br (protein)
Unique Ligands	CA, CL, DBB, GOL, MN

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3RLI \| pdb_00003rli	Download File View File

Crystal structure of monoacylglycerol lipase from Bacillus sp. H257 in complex with PMSF

Rengachari, S., Bezerra, G.A., Gruber, K., Oberer, M.

(2012) Biochim Biophys Acta 1821: 1012-1021

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.854 Å
Organisms	Bacillus sp. H-257
Macromolecule	Thermostable monoacylglycerol lipase (protein)
Unique Ligands	MRD, PMS

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3RM3 \| pdb_00003rm3	Download File View File

Crystal structure of monoacylglycerol lipase from Bacillus sp. H257

Rengachari, S., Bezerra, G.A., Gruber, K., Oberer, M.

(2012) Biochim Biophys Acta 1821: 1012-1021

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Bacillus sp. H-257
Macromolecule	Thermostable monoacylglycerol lipase (protein)
Unique Ligands	MRD

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3SH3 \| pdb_00003sh3	Download File View File

Crystal structure of a pro-inflammatory lectin from the seeds of Dioclea wilsonii STANDL

Rangel, T.B.A., Rocha, B.A.M., Bezerra, G.A., Bezerra, M.J.B., Nascimento, K.S., Nagano, C.S., Sampaio, A.H., Assreuy, A.M.S., Gruber, K., Delatorre, P., Cavada, B.S.

(2012) Biochimie 94: 525-532

Released	2011-10-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Macropsychanthus wilsonii
Macromolecule	Lectin alpha chain (protein)
Unique Ligands	A3B, CA, CL, MN, XMM

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3T6B \| pdb_00003t6b	Download File View File

Structure of human DPPIII in complex with the opioid peptide Tynorphin, at 2.4 Angstroms

Bezerra, G.A., Gruber, K.

(2012) Proc Natl Acad Sci U S A 109: 6525-6530

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 3 (protein) Tynorphin (protein)

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3T6J \| pdb_00003t6j	Download File View File

Structure of human DPPIII in complex with the opioid peptide Tynorphin, at 3.0 Angstroms

Bezerra, G.A., Gruber, K.

(2012) Proc Natl Acad Sci U S A 109: 6525-6530

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.976 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 3 (protein) Tynorphin (protein)

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4EBB \| pdb_00004ebb	Download File View File

Structure of DPP2

Shewchuk, L.M., Hassell, A.H., Sweitzer, S.M., Sweitzer, T.D., McDevitt, P.J., Kennedy-Wilson, K.M., Johanson, K.O.

(2012) PLoS One 7: e43019-e43019

Released	2012-09-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 2 (protein)
Unique Ligands	NAG, ZN

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4K1Y \| pdb_00004k1y	Download File View File

Crystal structure of Canavalia boliviana lectin in complex with Man1-3Man-OMe

Bezerra, G.A., Viertlmayr, R., Moura, T.R., Delatorre, P., Rocha, B.A.M., Cavada, B.S., Gruber, K.

(2014) PLoS One 9: e97015-e97015

Released	2014-04-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Canavalia boliviana
Macromolecule	Canavalia boliviana lectin (protein)
Unique Ligands	CA, CD, MN
Unique branched monosaccharides	MAN, MMA

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4K1Z \| pdb_00004k1z	Download File View File

Crystal structure of Canavalia boliviana lectin in complex with Man1-4Man-OMe

Bezerra, G.A., Viertlmayr, R., Moura, T.R., Delatorre, P., Rocha, B.A.M., Cavada, B.S., Gruber, K.

(2014) PLoS One 9: e97015-e97015

Released	2014-04-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Canavalia boliviana
Macromolecule	Canavalia boliviana lectin (protein)
Unique Ligands	CA, CD, CL, MN
Unique branched monosaccharides	MAN, MMA

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4K20 \| pdb_00004k20	Download File View File

Crystal structure of Canavalia boliviana lectin

Viertlmayr, R., Bezerra, G.A., Moura, T.R., Delatorre, P., Rocha, B.A.M., Cavada, B.S., Gruber, K.

(2014) PLoS One 9: e97015-e97015

Released	2014-04-09
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Canavalia boliviana
Macromolecule	Canavalia boliviana lectin (protein)
Unique Ligands	CA, MN

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4K21 \| pdb_00004k21	Download File View File

Crystal structure of Canavalia boliviana lectin in complex with Xman

Bezerra, G.A., Moura, T.R., Viertlmayr, R., Delatorre, P., Rocha, B.A.M., Nagano, C.S., Gruber, K., Cavada, B.S.

(2014) PLoS One 9: e97015-e97015

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Canavalia boliviana
Macromolecule	Canavalia boliviana lectin (protein)
Unique Ligands	CA, MN, XMM

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4U2A \| pdb_00004u2a	Download File View File

Structure of a lectin from the seeds of Vatairea macrocarpa complexed with GalNAc

Sousa, B.L., Silva-Filho, J.C., Kumar, P., Lyskowski, A., Bezerra, G.A., Delatorre, P., Rocha, B.A.M., Nagano, C.S., Gruber, K., Cavada, B.S.

(2014) Int J Biochem Cell Biol 59C: 103-110

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Vatairea macrocarpa
Macromolecule	Seed lectin (protein)
Unique Ligands	A2G, CA, CIT, GOL, MN, SO4

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4U36 \| pdb_00004u36	Download File View File

Crystal structure of a seed lectin from Vatairea macrocarpa complexed with Tn-antigen

Sousa, B.L., Silva-Filho, J.C., Kumar, P., Lyskowski, A., Bezerra, G.A., Delatorre, P., Rocha, B.A.M., Nagano, C.S., Gruber, K., Cavada, B.S.

(2014) Int J Biochem Cell Biol 59C: 103-110

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Vatairea macrocarpa
Macromolecule	Seed lectin (protein)
Unique Ligands	A2G, CA, CIT, MN, SER, SO4

1 to 25 of 166 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1WUV | pdb_00001wuv

2D7F | pdb_00002d7f

2EF6 | pdb_00002ef6

2EIG | pdb_00002eig

2OVU | pdb_00002ovu

2OW4 | pdb_00002ow4

2P2K | pdb_00002p2k

2P34 | pdb_00002p34

2P37 | pdb_00002p37

2ZBJ | pdb_00002zbj

3AX4 | pdb_00003ax4

3FVY | pdb_00003fvy

3JU9 | pdb_00003ju9

3RLI | pdb_00003rli

3RM3 | pdb_00003rm3

3SH3 | pdb_00003sh3

3T6B | pdb_00003t6b

3T6J | pdb_00003t6j

4EBB | pdb_00004ebb

4K1Y | pdb_00004k1y

4K1Z | pdb_00004k1z

4K20 | pdb_00004k20

4K21 | pdb_00004k21

4U2A | pdb_00004u2a

4U36 | pdb_00004u36