RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Fernandez-Martinez, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (10)
	Nakaseomyces glabratus (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

Eukaryota (12)

Experimental Method

	ELECTRON MICROSCOPY (6)
	X-RAY DIFFRACTION (5)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (1)
	3.0 - 3.5 (1)
	> 4.5 (6)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (3)
	2015 - 2019 (1)
	2020 - 2024 (6)

Enzyme Classification Name

Hydrolases (5)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (8)
	Cyclic (4)
	Dihedral (1)

AllSelected

1 to 12 of 12 Structures

Page 1 of 1

Sort by

Explore in 3D

3KEP \| pdb_00003kep	Download File View File

Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae

Sampathkumar, P., Ozyurt, S.A., Do, J., Bain, K., Dickey, M., Gheyi, T., Sali, A., Kim, S.J., Phillips, J., Pieper, U., Fernandez-Martinez, J., Franke, J.D., Atwell, S., Thompson, D.A., Emtage, J.S., Wasserman, S., Rout, M., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2010) Proteins 78: 1992-1998

Released	2009-12-22
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleoporin NUP145 (protein)
Unique Ligands	EDO

Explore in 3D

3KES \| pdb_00003kes	Download File View File

Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae in the Hexagonal, P61 space group

(2010) Proteins 78: 1992-1998

Released	2009-12-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleoporin NUP145 (protein)
Unique Ligands	EDO

Explore in 3D

3KFO \| pdb_00003kfo	Download File View File

Crystal structure of the C-terminal domain from the nuclear pore complex component NUP133 from Saccharomyces cerevisiae

Sampathkumar, P., Bonanno, J.B., Miller, S., Bain, K., Dickey, M., Gheyi, T., Almo, S.C., Rout, M., Sali, A., Phillips, J., Pieper, U., Fernandez-Martinez, J., Franke, J.D., Atwell, S., Thompson, D.A., Emtage, J.S., Wasserman, S., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2011) Proteins 79: 1672-1677

Released	2010-01-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleoporin NUP133 (protein)
Unique Ligands	GOL

Explore in 3D

3NF5 \| pdb_00003nf5	Download File View File

Crystal structure of the C-terminal domain of nuclear pore complex component NUP116 from Candida glabrata

Sampathkumar, P., Manglicmot, D., Bain, K., Gilmore, J., Gheyi, T., Rout, M., Sali, A., Atwell, S., Thompson, D.A., Emtage, J.S., Wasserman, S., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2012) Proteins 80: 2110-2116

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Nakaseomyces glabratus
Macromolecule	Nucleoporin NUP116 (protein)
Unique Ligands	GOL

Explore in 3D

4IFQ \| pdb_00004ifq	Download File View File

Crystal structure of Saccharomyces cerevisiae NUP192, residues 2 to 960 [ScNup192(2-960)]

Sampathkumar, P., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC), Nucleocytoplasmic Transport: a Target for Cellular Control (NPCXstals)

(2013) Structure 21: 560-571

Released	2013-02-20
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Nucleoporin NUP192 (protein)
Unique Ligands	IOD, SO4

Explore in 3D

5TVZ \| pdb_00005tvz	Download File View File

Solution NMR structure of Saccharomyces cerevisiae Pom152 Ig-like repeat, residues 718-820

Dutta, K., Sampathkumar, P., Cowburn, D., Almo, S.C., Rout, M.P., Fernandez-Martinez, J.

(2017) Structure 25: 434-445

Released	2017-02-22
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleoporin POM152 (protein)

Explore in 3D

7N84 \| pdb_00007n84	Download File View File

Double nuclear outer ring from the isolated yeast NPC

Akey, C.W., Rout, M.P., Ouch, C., Echevarria, I., Fernandez-Martinez, J., Nudelman, I.

(2022) Cell 185: 361-378.e25

Released	2022-01-26
Method	ELECTRON MICROSCOPY 11.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 9

Explore in 3D

7N85 \| pdb_00007n85	Download File View File

Inner ring spoke from the isolated yeast NPC

Akey, C.W., Rout, M.P., Ouch, C., Echevarria, I., Fernandez-Martinez, J., Nudelman, I.

(2022) Cell 185: 361-378.e25

Released	2022-01-26
Method	ELECTRON MICROSCOPY 7.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 11

Explore in 3D

7N9F \| pdb_00007n9f	Download File View File

Structure of the in situ yeast NPC

Villa, E., Singh, D., Ludtke, S.J., Akey, C.W., Rout, M.P., Echeverria, I., Suslov, S.

(2022) Cell 185: 361-378.e25

Released	2022-01-26
Method	ELECTRON MICROSCOPY 37 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 21

Explore in 3D

8T9L \| pdb_00008t9l	Download File View File

Pom34-Pom152 membrane attachment site yeast NPC

Akey, C.W., Echeverria, I., Ouch, C., Fernandez-Martinez, J., Rout, M.P.

(2023) Mol Cell 83: 3283-3302.e5

Released	2023-10-11
Method	ELECTRON MICROSCOPY 7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleoporin POM152 (protein) Nucleoporin POM34 (protein)