RCSB PDB: Search

1A4T \| pdb_00001a4t	Download File View File

SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

Cai, Z., Gorin, A.A., Frederick, R., Ye, X., Hu, W., Majumdar, A., Kettani, A., Patel, D.J.

(1998) Nat Struct Biol 5: 203-212

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	20-MER BASIC PEPTIDE (protein) BOXB RNA (nucleic acid)

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1A8N \| pdb_00001a8n	Download File View File

SOLUTION STRUCTURE OF A NA+ CATION STABILIZED DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS FORMED BY G-G-G-C REPEATS OBSERVED IN AAV AND HUMAN CHROMOSOME 19, NMR, 8 STRUCTURES

Kettani, A., Bouaziz, S., Gorin, A., Zhao, H., Jones, R., Patel, D.J.

(1998) J Mol Biology 282: 619-636

Released	1998-10-14
Method	SOLUTION NMR
Macromolecule	DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS (nucleic acid)

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1AX6 \| pdb_00001ax6	Download File View File

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES

Mao, B., Gorin, A.A., Gu, Z., Hingerty, B.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 14479-14490

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG) (nucleic acid)
Unique Ligands	AF

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1AX7 \| pdb_00001ax7	Download File View File

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED AT A TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

Mao, B., Gu, Z., Gorin, A.A., Hingerty, B.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 14491-14501

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(AAC-[AF]G-CTACCATCC)D(GGATGGTAG) (nucleic acid)
Unique Ligands	AF

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1AXL \| pdb_00001axl	Download File View File

SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES

Feng, B., Gorin, A.A., Kolbanovskiy, A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 13780-13790

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG) (nucleic acid)
Unique Ligands	BAP

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1AXO \| pdb_00001axo	Download File View File

STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

Feng, B., Gorin, A.A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.

(1997) Biochemistry 36: 13769-13779

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC) (nucleic acid)
Unique Ligands	BAP

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1AXU \| pdb_00001axu	Download File View File

SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES

Gu, Z., Gorin, A.A., Krishnasami, R., Hingerty, B.E., Basu, A.K., Broyde, S., Patel, D.J.

(1999) Biochemistry 38: 10843-10854

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) (nucleic acid)
Unique Ligands	AP

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1AXV \| pdb_00001axv	Download File View File

SOLUTION NMR STRUCTURE OF THE [BP]DA ADDUCT OPPOSITE DT IN A DNA DUPLEX, 6 STRUCTURES

Mao, B., Gu, Z., Gorin, A.A., Chen, J., Hingerty, B.E., Amid, S., Broyde, S., Geacintov, N.E., Patel, D.J.

(1999) Biochemistry 38: 10831-10842

Released	1998-07-01
Method	SOLUTION NMR
Macromolecule	DNA DUPLEX D(CTCTC-[BP]A-CTTCC)D(GGAAGTGAGAG) (nucleic acid)
Unique Ligands	BAP

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1C0Y \| pdb_00001c0y	Download File View File

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED OPPOSITE DA AT A TEMPLATE-PRIMER JUNCTION

Gu, Z., Gorin, A., Hingerty, B.E., Broyde, S., Patel, D.J.

(1999) Biochemistry 38: 10855-10870

Released	1999-08-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(APAPCPGPCPTPAPCPCPAPTPCPC)-3') (nucleic acid) DNA (5'-D(GPGPAPTPGPGPTPAPGP*C)-3') (nucleic acid)
Unique Ligands	AF

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1EEG \| pdb_00001eeg	Download File View File

A(GGGG)A HEXAD PAIRING ALIGMENT FOR THE D(G-G-A-G-G-A-G) SEQUENCE

Kettani, A., Gorin, A., Majumdar, A., Hermann, T., Skripkin, E., Zhao, H., Jones, R., Patel, D.J.

(2000) J Mol Biology 297: 627-644

Released	2000-04-02
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPAPGPGPA)-3') (nucleic acid)

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1EXY \| pdb_00001exy	Download File View File

SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET

Jiang, F., Gorin, A., Hu, W., Majumdar, A., Baskerville, S., Xu, W., Ellington, A., Patel, D.J.

(1999) Structure 7: 1461-1472

Released	2000-05-15
Method	SOLUTION NMR
Organisms	Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A)
Macromolecule	HTLV-1 REX PEPTIDE (protein) RNA APTAMER, 33-MER (nucleic acid)

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1F3S \| pdb_00001f3s	Download File View File

Solution Structure of DNA Sequence GGGTTCAGG Forms GGGG Tetrade and G(C-A) Triad.

Kettani, A., Basu, G., Gorin, A., Majumdar, A., Skripkin, E., Patel, D.J.

(2000) J Mol Biology 301: 129-146

Released	2000-11-13
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPGPTPTPCPAPGP*G)-3') (nucleic acid)

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1FJ5 \| pdb_00001fj5	Download File View File

TAMOXIFEN-DNA ADDUCT

Shimotakahara, S., Gorin, A., Kolbanovskiy, A., Kettani, A., Hingerty, B.E., Amin, S., Broyde, S., Geacintov, N., Patel, D.J.

(2000) J Mol Biology 302: 377-393

Released	2000-09-11
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPCPAPTPCPGPCPTPAPCPC)-3') (nucleic acid) DNA (5'-D(GPGPTPAPGPCPGPAPTPGPG)-3') (nucleic acid)
Unique Ligands	TAX

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1JJP \| pdb_00001jjp	Download File View File

A(GGGG) Pentad-Containing Dimeric DNA Quadruplex Involving Stacked G(anti)G(anti)G(anti)G(syn) Tetrads

Zhang, N., Gorin, A., Majumdar, A., Kettani, A., Chernichenko, N., Skripkin, E., Patel, D.J.

(2001) J Mol Biology 311: 1063-1079

Released	2001-09-19
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPGPAPGPGPTPTPTPGPGPGPAPT)-3' (nucleic acid)

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1JVC \| pdb_00001jvc	Download File View File

Dimeric DNA Quadruplex Containing Major Groove-Aligned A.T.A.T and G.C.G.C Tetrads Stabilized by Inter-Subunit Watson-Crick A:T and G:C Pairs

Zhang, N., Gorin, A., Majumdar, A., Kettani, A., Chernichenko, N., Skripkin, E., Patel, D.J.

(2001) J Mol Biology 312: 1073-1088

Released	2001-10-24
Method	SOLUTION NMR
Macromolecule	5'-D(GPAPGPCPAPGPGPT)-3' (nucleic acid)

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1ULL \| pdb_00001ull	Download File View File

RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES

Ye, X., Gorin, A., Ellington, A.D., Patel, D.J.

(1996) Nat Struct Biol 3: 1026-1033

Released	1997-08-20
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	REV PEPTIDE (protein) RNA (5'-R (GPGPCPUPGPGPAPCPUPCPGPUPAPCPUPUPCPGP GPUPAPCPUPGPGPAPGPAPAPAPCPAPGPCPC)-3') (nucleic acid)

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484D \| pdb_0000484d	Download File View File

SOLUTION STRUCTURE OF HIV-1 REV PEPTIDE-RNA APTAMER COMPLEX

Ye, X., Gorin, A.A., Frederick, R., Hu, W., Majumdar, A., Xu, W., Mclendon, G., Ellington, A., Patel, D.J.

(1999) Chem Biol 6: 657-669

Released	1999-10-14
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1
Macromolecule	BASIC REV PEPTIDE (protein) RNA APTAMER (nucleic acid)

1A4T | pdb_00001a4t

SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

1A8N | pdb_00001a8n

SOLUTION STRUCTURE OF A NA+ CATION STABILIZED DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS FORMED BY G-G-G-C REPEATS OBSERVED IN AAV AND HUMAN CHROMOSOME 19, NMR, 8 STRUCTURES

1AX6 | pdb_00001ax6

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES

1AX7 | pdb_00001ax7

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED AT A TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

1AXL | pdb_00001axl

SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES

1AXO | pdb_00001axo

STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES

1AXU | pdb_00001axu

SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES

1AXV | pdb_00001axv

SOLUTION NMR STRUCTURE OF THE [BP]DA ADDUCT OPPOSITE DT IN A DNA DUPLEX, 6 STRUCTURES

1C0Y | pdb_00001c0y

SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED OPPOSITE DA AT A TEMPLATE-PRIMER JUNCTION

1EEG | pdb_00001eeg

A(GGGG)A HEXAD PAIRING ALIGMENT FOR THE D(G-G-A-G-G-A-G) SEQUENCE

1EXY | pdb_00001exy

SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET

1F3S | pdb_00001f3s

Solution Structure of DNA Sequence GGGTTCAGG Forms GGGG Tetrade and G(C-A) Triad.

1FJ5 | pdb_00001fj5

TAMOXIFEN-DNA ADDUCT

1JJP | pdb_00001jjp

A(GGGG) Pentad-Containing Dimeric DNA Quadruplex Involving Stacked G(anti)G(anti)G(anti)G(syn) Tetrads

1JVC | pdb_00001jvc

Dimeric DNA Quadruplex Containing Major Groove-Aligned A.T.A.T and G.C.G.C Tetrads Stabilized by Inter-Subunit Watson-Crick A:T and G:C Pairs

1ULL | pdb_00001ull

RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES

484D | pdb_0000484d

SOLUTION STRUCTURE OF HIV-1 REV PEPTIDE-RNA APTAMER COMPLEX

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1A4T | pdb_00001a4t

1A8N | pdb_00001a8n

1AX6 | pdb_00001ax6

1AX7 | pdb_00001ax7

1AXL | pdb_00001axl

1AXO | pdb_00001axo

1AXU | pdb_00001axu

1AXV | pdb_00001axv

1C0Y | pdb_00001c0y

1EEG | pdb_00001eeg

1EXY | pdb_00001exy

1F3S | pdb_00001f3s

1FJ5 | pdb_00001fj5

1JJP | pdb_00001jjp

1JVC | pdb_00001jvc

1ULL | pdb_00001ull

484D | pdb_0000484d