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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hota, P.K."

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Search Summary

This query matches 494 Structures.

Refinements

Structure Determination Methodology

experimental (494)

Scientific Name of Source Organism

	Homo sapiens (148)
	Meiothermus taiwanensis (36)
	Rattus norvegicus (31)
	Sus scrofa (30)
	Escherichia coli (24)
	synthetic construct (21)
	Severe acute respiratory syndrome coronavirus 2 (19)
	Escherichia coli K-12 (14)
	Tetrahymena thermophila (14)
	Mus musculus (9)

More...

Taxonomy

	Eukaryota (283)
	Bacteria (172)
	Riboviria (58)
	other sequences (22)
	Duplodnaviria (10)
	Archaea (6)
	Varidnaviria (2)

Experimental Method

	ELECTRON MICROSCOPY (289)
	X-RAY DIFFRACTION (203)
	SOLUTION NMR (2)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (447)
	RNA (66)
	DNA (20)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (72)
	2.0 - 2.5 (81)
	2.5 - 3.0 (78)
	3.0 - 3.5 (113)
	3.5 - 4.0 (71)
	4.0 - 4.5 (19)
	> 4.5 (44)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (12)
	2010 - 2014 (40)
	2015 - 2019 (87)
	2020 - 2024 (319)
	2025 - 2029 (32)

Enzyme Classification Name

	Translocases (41)
	Hydrolases (110)
	Transferases (56)
	Oxidoreductases (35)
	Lyases (14)
	Isomerases (4)
	Ligases (7)

Membrane Protein Annotation

	PDBTM (73)
	mpstruc (68)
	OPM (62)
	MemProtMD (57)

Symmetry Type

	Asymmetric (280)
	Cyclic (136)
	Dihedral (23)
	Helical (11)
	Octahedral (5)
	Icosahedral (4)

SCOP Classification

	All alpha proteins (6)
	Alpha and beta proteins (a/b) (14)
	All beta proteins (8)
	Alpha and beta proteins (a+b) (6)
	Membrane and cell surface proteins and peptides (1)
	Artifacts (4)

AllSelected

1 to 25 of 494 Structures

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1N4E \| pdb_00001n4e	Download File View File

Crystal Structure of a DNA Decamer Containing a Thymine-dimer

Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.-S., Kang, C.

(2002) Proc Natl Acad Sci U S A 99: 15965-15970

Released	2003-02-04
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	5'-D(CPGPAPAPTPTPAPAPGPC)-3' (nucleic acid) 5'-D(GPCPTPTPAPAPTPTPCPG)-3' (nucleic acid)

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1SM5 \| pdb_00001sm5	Download File View File

Crystal Structure of a DNA Decamer Containing a Thymine-dimer

Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.-S., Kang, C.

(2002) Proc Natl Acad Sci U S A 99: 15965-15970

Released	2004-05-25
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(CPGPAPAPTPTPAPAPGPC)-3' (nucleic acid) 5'-D(GPCP(BRU)PTPAPAPTP(BRU)PCPG)-3' (nucleic acid)

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1T4I \| pdb_00001t4i	Download File View File

Crystal Structure of a DNA Decamer Containing a Thymine-dimer

Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.S., Kang, C.

(2002) Proc Natl Acad Sci U S A 99: 15965-15970

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	5'-D(CPGPAPAPTPTPAPAPGPC)-3' (nucleic acid) 5'-D(GPCPTPTPAPAPTPTPCPG)-3' (nucleic acid)

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1X92 \| pdb_00001x92	Download File View File

CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE IN COMPLEX WITH REACTION PRODUCT D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPHATE

Walker, J.R., Evdokimova, E., Kudritska, M., Joachimiak, A., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2008) J Biological Chem 283: 2835-2845

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PHOSPHOHEPTOSE ISOMERASE (protein)
Unique Ligands	M7P

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1ZM0 \| pdb_00001zm0	Download File View File

Crystal Structure of the Carboxyl Terminal PH Domain of Pleckstrin To 2.1 Angstroms

Jackson, S.G., Zhang, Y., Zhang, K., Summerfield, R., Haslam, R.J., Junop, M.S.

(2006) Acta Crystallogr D Biol Crystallogr 62: 324-330

Released	2006-02-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Pleckstrin (protein)

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2GMW \| pdb_00002gmw	Download File View File

Crystal Structure of D,D-heptose 1.7-bisphosphate phosphatase from E. Coli.

Zhang, K., DeLeon, G., Wright, G.D., Junop, M.S.

(2010) Biochemistry 49: 1033-1041

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	D,D-heptose 1,7-bisphosphate phosphatase (protein)
Unique Ligands	ZN

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2HW2 \| pdb_00002hw2	Download File View File

Crystal structure of Rifampin ADP-ribosyl transferase in complex with Rifampin

Baysarowich, J., Wright, G.D., Junop, M.

(2008) Proc Natl Acad Sci U S A 105: 4886-4891

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Rifampin ADP-ribosyl transferase (protein)
Unique Ligands	GLY, RFP

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2I22 \| pdb_00002i22	Download File View File

Crystal structure of Escherichia coli phosphoheptose isomerase in complex with reaction substrate sedoheptulose 7-phosphate

Blakely, K., Zhang, K., DeLeon, G., Wright, G., Junop, M.

(2008) J Biological Chem 283: 2835-2845

Released	2007-08-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Phosphoheptose isomerase (protein)
Unique Ligands	I22

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2I2W \| pdb_00002i2w	Download File View File

Crystal Structure of Escherichia Coli Phosphoheptose Isomerase

DeLeon, G., Blakely, K., Zhang, K., Wright, G., Junop, M.

(2008) J Biological Chem 283: 2835-2845

Released	2007-08-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Phosphoheptose isomerase (protein)
Unique Ligands	GOL

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2OPT \| pdb_00002opt	Download File View File

Crystal Structure of Apo ActR from Streptomyces coelicolor.

Willems, A.R., Junop, M.S.

(2008) J Mol Biology 376: 1377-1387

Released	2008-02-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Streptomyces coelicolor
Macromolecule	ActII protein (protein)

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3B6A \| pdb_00003b6a	Download File View File

Crystal structure of the Streptomyces coelicolor TetR family protein ActR in complex with actinorhodin

Willems, A.R., Junop, M.S.

(2008) J Mol Biology 376: 1377-1387

Released	2008-02-05
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Streptomyces coelicolor
Macromolecule	ActR protein (protein)
Unique Ligands	ZCT

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3B6C \| pdb_00003b6c	Download File View File

Crystal structure of the Streptomyces coelicolor TetR family protein ActR in complex with (S)-DNPA

Willems, A.R., Junop, M.S.

(2008) J Mol Biology 376: 1377-1387

Released	2008-02-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptomyces coelicolor
Macromolecule	ActII protein (protein)
Unique Ligands	SDN

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3BJZ \| pdb_00003bjz	Download File View File

Crystal structure of Pseudomonas aeruginosa phosphoheptose isomerase

Walker, J.R., Evdokimova, E., Kudritska, M., Osipiuk, J., Joachimiak, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2008) J Biological Chem 283: 2835-2845

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Phosphoheptose isomerase (protein)
Unique Ligands	CL, SO4

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3EPU \| pdb_00003epu	Download File View File

Crystal Structure of STM2138, a novel virulence chaperone in Salmonella

Zhang, K., Andres, S.N., Hannemann, M., Coombes, B., Junop, M.

To be published

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	STM2138 Virulence Chaperone (protein)

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3ESQ \| pdb_00003esq	Download File View File

Crystal Structure of Calcium-bound D,D-heptose 1.7-bisphosphate phosphatase from E. Coli

Sugiman-Marangos, S.N., Junop, M.S.

To be published

Released	2008-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	D,D-heptose 1,7-bisphosphate phosphatase (protein)
Unique Ligands	CA, ZN

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3ESR \| pdb_00003esr	Download File View File

Crystal Structure of D,D-heptose1.7-bisphosphate phosphatase from E. coli in complex with calcium and phosphate

Sugiman-Marangos, S.N., Junop, M.S.

To be published

Released	2008-10-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli K-12
Macromolecule	D,D-heptose 1,7-bisphosphate phosphatase (protein)
Unique Ligands	CA, PO4, ZN

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3IZ3 \| pdb_00003iz3	Download File View File

CryoEM structure of cytoplasmic polyhedrosis virus

Cheng, L., Sun, J., Zhang, K., Mou, Z., Huang, X., Ji, G., Sun, F., Zhang, J., Zhu, P.

(2011) Proc Natl Acad Sci U S A 108: 1373-1378

Released	2011-03-16
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Bombyx mori cypovirus 1
Macromolecule	Structural protein VP1 (protein) Structural protein VP3 (protein) Viral structural protein 5 (protein)

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3J17 \| pdb_00003j17	Download File View File

Structure of a transcribing cypovirus by cryo-electron microscopy

Yang, C., Ji, G., Liu, H., Zhang, K., Liu, G., Sun, F., Zhu, P., Cheng, L.

(2012) Proc Natl Acad Sci U S A 109: 6118-6123

Released	2012-04-04
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Bombyx mori cypovirus 1
Macromolecule	Structural protein VP3 (protein) Structural protein VP5 (protein) VP1 (protein)

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3J1B \| pdb_00003j1b	Download File View File

Cryo-EM structure of 8-fold symmetric rATcpn-alpha in apo state

Zhang, K., Wang, L., Liu, Y.X., Wang, X., Gao, B., Hu, Z.J., Ji, G., Chan, K.Y., Schulten, K., Dong, Z.Y., Sun, F.

(2013) Protein Cell 4: 432-444

Released	2013-08-07
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Acidianus tengchongensis
Macromolecule	Chaperonin alpha subunit (protein)

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3J1C \| pdb_00003j1c	Download File View File

Cryo-EM structure of 9-fold symmetric rATcpn-alpha in apo state

Zhang, K., Wang, L., Liu, Y.X., Wang, X., Gao, B., Hu, Z.J., Ji, G., Chan, K.Y., Schulten, K., Dong, Z.Y., Sun, F.

(2013) Protein Cell 4: 432-444

Released	2013-08-07
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Acidianus tengchongensis
Macromolecule	Chaperonin alpha subunit (protein)

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3J1E \| pdb_00003j1e	Download File View File

Cryo-EM structure of 9-fold symmetric rATcpn-beta in apo state

Zhang, K., Wang, L., Liu, Y.X., Wang, X., Gao, B., Hu, Z.J., Ji, G., Chan, K.Y., Schulten, K., Dong, Z.Y., Sun, F.

(2013) Protein Cell 4: 432-444

Released	2013-08-07
Method	ELECTRON MICROSCOPY 8.3 Å
Organisms	Acidianus tengchongensis
Macromolecule	Chaperonin beta subunit (protein)

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3J1F \| pdb_00003j1f	Download File View File

Cryo-EM structure of 9-fold symmetric rATcpn-beta in ATP-binding state

Zhang, K., Wang, L., Liu, Y.X., Wang, X., Gao, B., Hu, Z.J., Ji, G., Chan, K.Y., Schulten, K., Dong, Z.Y., Sun, F.

(2013) Protein Cell 4: 432-444

Released	2013-08-07
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Acidianus tengchongensis
Macromolecule	Chaperonin beta subunit (protein)
Unique Ligands	ATP, MG

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3J1P \| pdb_00003j1p	Download File View File

Atomic model of rabbit hemorrhagic disease virus

Wang, X., Liu, Y., Sun, F.

(2013) PLoS Pathog 9: e1003132-e1003132

Released	2013-01-30
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	Rabbit hemorrhagic disease virus
Macromolecule	Major capsid protein VP60 (protein)

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3JUE \| pdb_00003jue	Download File View File

Crystal Structure of ArfGAP and ANK repeat domain of ACAP1

Pang, X., Zhang, K., Ma, J., Zhou, Q., Sun, F.

(2012) J Biological Chem 287: 28675-28685

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	ARFGAP with coiled-coil, ANK repeat and PH domain-containing protein 1 (protein)
Unique Ligands	SO4, ZN

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3K6J \| pdb_00003k6j	Download File View File

Crystal structure of the dehydrogenase part of multifuctional enzyme 1 from C.elegans

Ouyang, Z., Zhang, K., Zhai, Y., Lu, J., Sun, F.

To be published

Released	2010-10-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Caenorhabditis elegans
Macromolecule	Protein F01G10.3, confirmed by transcript evidence (protein)
Unique Ligands	PO4, ZN

1 to 25 of 494 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1N4E | pdb_00001n4e

1SM5 | pdb_00001sm5

1T4I | pdb_00001t4i

1X92 | pdb_00001x92

1ZM0 | pdb_00001zm0

2GMW | pdb_00002gmw

2HW2 | pdb_00002hw2

2I22 | pdb_00002i22

2I2W | pdb_00002i2w

2OPT | pdb_00002opt

3B6A | pdb_00003b6a

3B6C | pdb_00003b6c

3BJZ | pdb_00003bjz

3EPU | pdb_00003epu

3ESQ | pdb_00003esq

3ESR | pdb_00003esr

3IZ3 | pdb_00003iz3

3J17 | pdb_00003j17

3J1B | pdb_00003j1b

3J1C | pdb_00003j1c

3J1E | pdb_00003j1e

3J1F | pdb_00003j1f

3J1P | pdb_00003j1p

3JUE | pdb_00003jue

3K6J | pdb_00003k6j