RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Jana, S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (8)
	Geotrichum candidum (4)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Trichoderma atroviride IMI 206040 (2)
	Geotrichum galactomycetum (1)
	Trichoderma reesei (1)

Taxonomy

	Eukaryota (16)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (8)
	2.0 - 2.5 (4)

Release Date

	2015 - 2019 (13)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (10)
	Lyases (5)
	Oxidoreductases (2)
	Transferases (1)

Symmetry Type

	Asymmetric (16)
	Dihedral (2)

SCOP Classification

	All beta proteins (13)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (2)
	Artifacts (4)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

Sort by

Explore in 3D

4ZZT \| pdb_00004zzt	Download File View File

Geotrichum candidum Cel7A structure complex with thio-linked cellotriose at 1.56A

Borisova, A.S., Stahlberg, J.

(2015) FEBS J 282: 4515

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Geotrichum candidum
Macromolecule	CELLOBIOHYDROLASE CEL7A (protein)
Unique Ligands	GOL, MG, NAG
Unique branched monosaccharides	BGC, MAN, NAG, SGC

Explore in 3D

4ZZU \| pdb_00004zzu	Download File View File

Geotrichum candidum Cel7A structure complex with thio-linked cellotetraose at 1.4A

Borisova, A.S., Stahlberg, J.

(2015) FEBS J 282: 4515

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Geotrichum galactomycetum
Macromolecule	CELLOBIOHYDROLASE I (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	BGC, NAG, SGC

Explore in 3D

4ZZV \| pdb_00004zzv	Download File View File

Geotrichum candidum Cel7A apo structure at 1.4A

Borisova, A.S., Stahlberg, J.

(2015) FEBS J 282: 4515

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Geotrichum candidum
Macromolecule	CELLOBIOHYDROLASE I (protein)
Unique Ligands	MAN, MG, NAG
Unique branched monosaccharides	NAG

Explore in 3D

4ZZW \| pdb_00004zzw	Download File View File

Geotrichum candidum Cel7A structure complex with cellobiose at 1.5A

Borisova, A.S., Stahlberg, J.

(2015) FEBS J 282: 4515

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geotrichum candidum
Macromolecule	CELLOBIOHYDROLASE I (protein)
Unique Ligands	GOL, MAN, MG, NAG, PEG
Unique branched monosaccharides	BGC, NAG

Explore in 3D

5AMP \| pdb_00005amp	Download File View File

Geotrichum candidum Cel7A apo structure at 2.1A

Borisova, A.S., Stahlberg, J.

(2015) FEBS J 282: 4515

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Geotrichum candidum
Macromolecule	CELLOBIOHYDROLASE I (protein)
Unique Ligands	GOL, NAG, PEG
Unique branched monosaccharides	NAG

Explore in 3D

5O59 \| pdb_00005o59	Download File View File

Cellobiohydrolase Cel7A from T. atroviride

Borisova, A.S., Stahlberg, J., Hansson, H.

(2018) Biotechnol Biofuels 11: 5-5

Released	2018-01-31
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Trichoderma atroviride IMI 206040
Macromolecule	Glucanase (protein)
Unique Ligands	BTB, GLC, GOL, GS1, NAG, NI, PEG

Explore in 3D

5O5D \| pdb_00005o5d	Download File View File

Cellobiohydrolase Cel7A from T. atroviride

Borisova, A.S., Stahlberg, J., Hansson, H.

(2018) Biotechnol Biofuels 11: 5-5

Released	2018-01-31
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Trichoderma atroviride IMI 206040
Macromolecule	Glucanase (protein)
Unique Ligands	BTB, CL, GOL, NAG, NI, PEG

Explore in 3D

5OA5 \| pdb_00005oa5	Download File View File

CELLOBIOHYDROLASE I (CEL7A) FROM HYPOCREA JECORINA WITH IMPROVED THERMAL STABILITY

Goedegebuur, F., Hansson, H., Karkehabadi, S., Mikkelsen, N., Stahlberg, J., Sandgren, M.

(2017) J Biological Chem 292: 17418-17430

Released	2017-09-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trichoderma reesei
Macromolecule	Exoglucanase 1 (protein)
Unique Ligands	GOL, NAG

Explore in 3D

6NJ2 \| pdb_00006nj2	Download File View File

thermostable carbonic anhydrase II variant with tetrazine 2.0 at site 186

Kean, K.M., Karplus, P.A.

(2019) ACS Appl Mater Interfaces 11: 36391-36398

Released	2019-10-02
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	GOL, SO4, ZN

Explore in 3D

6NJ3 \| pdb_00006nj3	Download File View File

Thermostable variant of human carbonic anhydrase with ordered tetrazine 2.0 at site 233

Kean, K.M., Karplus, P.A.

(2019) ACS Appl Mater Interfaces 11: 36391-36398

Released	2019-10-02
Method	X-RAY DIFFRACTION 1.01 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	ACT, ZN

Explore in 3D

6NJ4 \| pdb_00006nj4	Download File View File

Thermostable variant of human carbonic anhydrase with disordered tetrazine 2.0 reacted with strained trans-cyclooctene at site 233

Kean, K.M., Karplus, P.A.

(2019) ACS Appl Mater Interfaces 11: 36391-36398

Released	2019-10-02
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	ZN

Explore in 3D

6NJ5 \| pdb_00006nj5	Download File View File

Thermostable variant of human carbonic anhydrase II with disordered tetrazine 2.0 at site 233

Kean, K.M., Karplus, P.A.

(2019) ACS Appl Mater Interfaces 11: 36391-36398

Released	2019-10-02
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	ZN

Explore in 3D

6NJ6 \| pdb_00006nj6	Download File View File

Thermostable variant of human carbonic anhydrase with tetrazine 2.0 at site 186 reacted with sTCO in crystallo

Kean, K.M., Karplus, P.A.

(2019) ACS Appl Mater Interfaces 11: 36391-36398

Released	2019-10-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	GOL, MOH, SO4, ZN

Explore in 3D

6Q0D \| pdb_00006q0d	Download File View File

CRYSTAL STRUCTURE OF LDHA IN COMPLEX WITH COMPOUND NCGC00384414-01 AT 2.05 A RESOLUTION

Dranow, D.M., Davies, D.R.

(2020) J Med Chem 63: 10984-11011

Released	2020-09-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	L-lactate dehydrogenase A chain (protein)
Unique Ligands	GOL, NAI, P8M, PO4

Explore in 3D

6Q13 \| pdb_00006q13	Download File View File

CRYSTAL STRUCTURE OF LDHA IN COMPLEX WITH COMPOUND NCGC00420737-09 AT 2.00 A RESOLUTION

Davies, D.R., Dranow, D.M.

(2020) J Med Chem 63: 10984-11011

Released	2020-09-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	L-lactate dehydrogenase A chain (protein)
Unique Ligands	EDO, NAI, P8V

Explore in 3D

8GIA \| pdb_00008gia	Download File View File

Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with TFMU-ADPr

Wallace, S.D., Bagde, S.R., Fromme, J.C.

(2023) ACS Chem Biol 18: 1200-1207

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	ZJ3

Explore in 3D

9AZX \| pdb_00009azx	Download File View File

Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with NDPr

Wallace, S.D., Bagde, S.R., Fromme, J.C.

(2024) ACS Chem Biol 19: 1093-1105

Released	2024-05-01
Method	X-RAY DIFFRACTION 1.395 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	A1AH3

Explore in 3D

9CBT \| pdb_00009cbt	Download File View File

Crystal structure of human sirtuin 3 fragment (residues 118-399) bound to intermediates from reaction with NAD and inhibitor NH6-10

Fenwick, M.K., Young, H.J., Lin, H.

(2024) J Med Chem 67: 15428-15437

Released	2024-08-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	5I7, 5IA, PG4, ZN

1 to 18 of 18 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4ZZT | pdb_00004zzt

Geotrichum candidum Cel7A structure complex with thio-linked cellotriose at 1.56A

4ZZU | pdb_00004zzu

Geotrichum candidum Cel7A structure complex with thio-linked cellotetraose at 1.4A

4ZZV | pdb_00004zzv

Geotrichum candidum Cel7A apo structure at 1.4A

4ZZW | pdb_00004zzw

Geotrichum candidum Cel7A structure complex with cellobiose at 1.5A

5AMP | pdb_00005amp

Geotrichum candidum Cel7A apo structure at 2.1A

5O59 | pdb_00005o59

Cellobiohydrolase Cel7A from T. atroviride

5O5D | pdb_00005o5d

Cellobiohydrolase Cel7A from T. atroviride

5OA5 | pdb_00005oa5

CELLOBIOHYDROLASE I (CEL7A) FROM HYPOCREA JECORINA WITH IMPROVED THERMAL STABILITY

6NJ2 | pdb_00006nj2

thermostable carbonic anhydrase II variant with tetrazine 2.0 at site 186

6NJ3 | pdb_00006nj3

Thermostable variant of human carbonic anhydrase with ordered tetrazine 2.0 at site 233

6NJ4 | pdb_00006nj4

Thermostable variant of human carbonic anhydrase with disordered tetrazine 2.0 reacted with strained trans-cyclooctene at site 233

6NJ5 | pdb_00006nj5

Thermostable variant of human carbonic anhydrase II with disordered tetrazine 2.0 at site 233

6NJ6 | pdb_00006nj6

Thermostable variant of human carbonic anhydrase with tetrazine 2.0 at site 186 reacted with sTCO in crystallo

6Q0D | pdb_00006q0d

CRYSTAL STRUCTURE OF LDHA IN COMPLEX WITH COMPOUND NCGC00384414-01 AT 2.05 A RESOLUTION

6Q13 | pdb_00006q13

CRYSTAL STRUCTURE OF LDHA IN COMPLEX WITH COMPOUND NCGC00420737-09 AT 2.00 A RESOLUTION

8GIA | pdb_00008gia

Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with TFMU-ADPr

9AZX | pdb_00009azx

Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with NDPr

9CBT | pdb_00009cbt

Crystal structure of human sirtuin 3 fragment (residues 118-399) bound to intermediates from reaction with NAD and inhibitor NH6-10

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4ZZT | pdb_00004zzt

4ZZU | pdb_00004zzu

4ZZV | pdb_00004zzv

4ZZW | pdb_00004zzw

5AMP | pdb_00005amp

5O59 | pdb_00005o59

5O5D | pdb_00005o5d

5OA5 | pdb_00005oa5

6NJ2 | pdb_00006nj2

6NJ3 | pdb_00006nj3

6NJ4 | pdb_00006nj4

6NJ5 | pdb_00006nj5

6NJ6 | pdb_00006nj6

6Q0D | pdb_00006q0d

6Q13 | pdb_00006q13

8GIA | pdb_00008gia

9AZX | pdb_00009azx

9CBT | pdb_00009cbt