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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kim, S.H."

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Search Summary

This query matches 242 Structures.

Refinements

Structure Determination Methodology

experimental (242)

Scientific Name of Source Organism

	Homo sapiens (93)
	Methanocaldococcus jannaschii (14)
	Salmonella enterica subsp. enterica serovar Typhimurium (13)
	Escherichia coli (9)
	Thermotoga maritima (9)
	Arabidopsis thaliana (7)
	Aquifex aeolicus (6)
	Gallus gallus (6)
	Staphylococcus aureus subsp. aureus N315 (6)
	Mus musculus (5)

More...

Taxonomy

	Eukaryota (122)
	Bacteria (83)
	Archaea (26)
	Riboviria (8)
	Duplodnaviria (5)
	Eukaryota (eukaryotes) (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (235)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (237)
	RNA (5)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (74)
	2.0 - 2.5 (88)
	2.5 - 3.0 (47)
	3.0 - 3.5 (18)
	3.5 - 4.0 (4)
	> 4.5 (1)

Release Date

	1975 - 1979 (1)
	1985 - 1989 (2)
	1990 - 1994 (12)
	1995 - 1999 (38)
	2000 - 2004 (47)
	2005 - 2009 (56)
	2010 - 2014 (11)
	2015 - 2019 (30)
	2020 - 2024 (45)

Enzyme Classification Name

	Hydrolases (48)
	Transferases (59)
	Oxidoreductases (17)
	Translocases (7)
	Ligases (4)
	Lyases (4)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (13)
	MemProtMD (10)
	OPM (4)

Symmetry Type

	Asymmetric (139)
	Cyclic (94)
	Dihedral (16)
	Helical (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (55)
	Alpha and beta proteins (a/b) (52)
	All beta proteins (31)
	All alpha proteins (29)
	Membrane and cell surface proteins and peptides (5)
	Artifacts (13)
	Multi-domain proteins (alpha and beta) (10)
	Small proteins (9)
	Coiled coil proteins (3)

AllSelected

1 to 25 of 242 Structures

Page 1 of 10

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1AIN \| pdb_00001ain	Download File View File

CRYSTAL STRUCTURE OF HUMAN ANNEXIN I AT 2.5 ANGSTROMS RESOLUTION

Kim, S.-H.

(1993) Protein Sci 2: 448-458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	ANNEXIN I (protein)
Unique Ligands	CA

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1AQ1 \| pdb_00001aq1	Download File View File

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR STAUROSPORINE

Endicott, J.A., Noble, M.E.M., Johnson, L.N., Lawrie, A., Tunnah, P., Brown, N.R.

(1997) Nat Struct Biol 4: 796-801

Released	1997-11-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT PROTEIN KINASE 2 (protein)
Unique Ligands	STU

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1B0U \| pdb_00001b0u	Download File View File

ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM

Hung, L.-W., Wang, I.X., Nikaido, K., Liu, P.-Q., Ames, G.F.-L., Kim, S.-H.

(1998) Nature 396: 703-707

Released	1999-11-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	HISTIDINE PERMEASE (protein)
Unique Ligands	ATP, CL

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1B38 \| pdb_00001b38	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2

Brown, N.R., Noble, M.E.M., Lawrie, A.M., Morris, M.C., Tunnah, P., Divita, G., Johnson, L.N., Endicott, J.A.

(1999) J Biological Chem 274: 8746-8756

Released	1998-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CELL DIVISION PROTEIN KINASE 2) (protein)
Unique Ligands	ATP, MG

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1B39 \| pdb_00001b39	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2 PHOSPHORYLATED ON THR 160

Brown, N.R., Noble, M.E.M., Lawrie, A.M., Morris, M.C., Tunnah, P., Divita, G., Johnson, L.N., Endicott, J.A.

(1999) J Biological Chem 274: 8746-8756

Released	1998-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CELL DIVISION PROTEIN KINASE 2) (protein)
Unique Ligands	ATP, MG

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1B78 \| pdb_00001b78	Download File View File

STRUCTURE-BASED IDENTIFICATION OF THE BIOCHEMICAL FUNCTION OF A HYPOTHETICAL PROTEIN FROM METHANOCOCCUS JANNASCHII:MJ0226

Hwang, K.Y., Chung, J.H., Han, Y.S., Kim, S.H., Cho, Y.

(1999) Nat Struct Biol 6: 691-696

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PYROPHOSPHATASE (protein)

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1B8P \| pdb_00001b8p	Download File View File

MALATE DEHYDROGENASE FROM AQUASPIRILLUM ARCTICUM

Kim, S.Y., Hwang, K.Y., Kim, S.-H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)

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1B8U \| pdb_00001b8u	Download File View File

MALATE DEHYDROGENASE FROM AQUASPIRILLUM ARCTICUM

Kim, S.Y., Hwang, K.Y., Kim, S.-H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)
Unique Ligands	NAD, OAA

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1B8V \| pdb_00001b8v	Download File View File

Malate dehydrogenase from Aquaspirillum arcticum

Kim, S.Y., Hwang, K.Y., Kim, S.H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)
Unique Ligands	NAD

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1BCC \| pdb_00001bcc	Download File View File

CYTOCHROME BC1 COMPLEX FROM CHICKEN

Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.-I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A., Kim, S.-H.

(1998) Nature 392: 677-684

Released	1998-08-19
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Gallus gallus
Macromolecule	Unique protein chains: 10
Unique Ligands	BOG, FES, HEM, PEE, U10

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1BU2 \| pdb_00001bu2	Download File View File

X-RAY STRUCTURE OF A VIRAL CYCLIN FROM HERPESVIRUS SAIMIRI

Schulze-Gahmen, U., Jung, J.U., Kim, S.-H.

(1999) Structure 7: 245-254

Released	1999-06-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Herpesvirus saimiri (strain 11)
Macromolecule	CYCLIN HOMOLOG (protein)

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1CKP \| pdb_00001ckp	Download File View File

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR PURVALANOL B

Gray, N.S., Thunnissen, A.M.W.H., Schultz, P.G., Kim, S.H.

(1998) Science 281: 533-538

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CYCLIN-DEPENDENT PROTEIN KINASE 2) (protein)
Unique Ligands	EDO, PVB

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1COJ \| pdb_00001coj	Download File View File

FE-SOD FROM AQUIFEX PYROPHILUS, A HYPERTHERMOPHILIC BACTERIUM

Lim, J.H., Yu, Y.G., Kim, S.-H., Cho, S.-J., Ahn, B.Y., Han, Y.S., Cho, Y.

(1997) J Mol Biology 270: 259-274

Released	1999-06-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex pyrophilus
Macromolecule	PROTEIN (SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	FE

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1DCF \| pdb_00001dcf	Download File View File

CRYSTAL STRUCTURE OF THE RECEIVER DOMAIN OF THE ETHYLENE RECEPTOR OF ARABIDOPSIS THALIANA

Muller-Dieckmann, H.J., Grantz, A., Kim, S.H.

(1999) Structure 7: 1547-1556

Released	2000-01-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	ETR1 PROTEIN (protein)

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1DM2 \| pdb_00001dm2	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR HYMENIALDISINE

Thunnissen, A.M., Kim, S.-H.

(2000) Chem Biol 7: 51-63

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 2 (protein)
Unique Ligands	EDO, HMD

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1DUS \| pdb_00001dus	Download File View File

MJ0882-A hypothetical protein from M. jannaschii

Hung, L., Huang, L., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Struct Funct Genomics 2: 121-127

Released	2000-07-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	MJ0882 (protein)

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1EIF \| pdb_00001eif	Download File View File

EUKARYOTIC TRANSLATION INITIATION FACTOR 5A FROM METHANOCOCCUS JANNASCHII

Kim, K.K., Hung, L.W., Yokota, H., Kim, R., Kim, S.H.

(1998) Proc Natl Acad Sci U S A 95: 10419-10424

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	EUKARYOTIC TRANSLATION INITIATION FACTOR 5A (protein)

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1EKE \| pdb_00001eke	Download File View File

CRYSTAL STRUCTURE OF CLASS II RIBONUCLEASE H (RNASE HII) WITH MES LIGAND

Lai, L.H., Yokota, H., Hung, L.W., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2000) Structure 8: 897-904

Released	2000-09-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	RIBONUCLEASE HII (protein)
Unique Ligands	MES

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1F5S \| pdb_00001f5s	Download File View File

CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM METHANOCOCCUS JANNASCHII

Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2001) Structure 9: 65-72

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (PSP) (protein)
Unique Ligands	MG, PO4

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1FBN \| pdb_00001fbn	Download File View File

CRYSTAL STRUCTURE OF A FIBRILLARIN HOMOLOGUE FROM METHANOCOCCUS JANNASCHII, A HYPERTHERMOPHILE, AT 1.6 A

Wang, H., Boisvert, D., Kim, K.K., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2000) EMBO J 19: 317-323

Released	2000-04-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	MJ FIBRILLARIN HOMOLOGUE (protein)

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1FJS \| pdb_00001fjs	Download File View File

CRYSTAL STRUCTURE OF THE INHIBITOR ZK-807834 (CI-1031) COMPLEXED WITH FACTOR XA

Adler, M., Whitlow, M.

(2000) Biochemistry 39: 12534-12542

Released	2000-10-04
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	COAGULATION FACTOR XA (protein)
Unique Ligands	CA, CL, GOL, Z34

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1G5S \| pdb_00001g5s	Download File View File

CRYSTAL STRUCTURE OF HUMAN CYCLIN DEPENDENT KINASE 2 (CDK2) IN COMPLEX WITH THE INHIBITOR H717

Dreyer, M.K., Borcherding, D.R., Dumont, J.A., Peet, N.P., Tsay, J.T., Wright, P.S., Bitonti, A.J., Shen, J., Kim, S.-H.

(2001) J Med Chem 44: 524-530

Released	2001-11-02
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	I17

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1G8A \| pdb_00001g8a	Download File View File

PYROCOCCUS HORIKOSHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN

Boisvert, D.C., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

To be published

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pyrococcus horikoshii
Macromolecule	FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN (protein)

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1G8S \| pdb_00001g8s	Download File View File

METHANOCOCCUS JANNASCHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN

Boisvert, D.C., Kim, S.H.

To be published

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN (protein)
Unique Ligands	MET