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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kim, S.J."

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Search Summary

This query matches 170 Structures.

Refinements

Structure Determination Methodology

experimental (170)

Scientific Name of Source Organism

	Homo sapiens (76)
	Helicobacter pylori 26695 (9)
	Saccharomyces cerevisiae (7)
	Bacillus subtilis (6)
	Saccharomyces cerevisiae S288C (5)
	Arabidopsis thaliana (4)
	Drosophila melanogaster (4)
	Escherichia coli (4)
	Mus musculus (4)
	Xenopus laevis (4)

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Taxonomy

	Eukaryota (105)
	Bacteria (49)
	Archaea (11)
	Monodnaviria (4)
	Riboviria (3)
	Varidnaviria (2)
	other sequences (2)
	Duplodnaviria (1)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (161)
	ELECTRON MICROSCOPY (5)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (169)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (42)
	2.0 - 2.5 (53)
	2.5 - 3.0 (40)
	3.0 - 3.5 (14)
	3.5 - 4.0 (4)
	4.0 - 4.5 (3)
	> 4.5 (2)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (1)
	2000 - 2004 (10)
	2005 - 2009 (31)
	2010 - 2014 (53)
	2015 - 2019 (49)
	2020 - 2024 (24)

Enzyme Classification Name

	Hydrolases (72)
	Oxidoreductases (13)
	Transferases (13)
	Lyases (8)
	Isomerases (3)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (107)
	Cyclic (60)
	Dihedral (12)
	Tetrahedral (2)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (49)
	Artifacts (13)
	All beta proteins (9)
	Alpha and beta proteins (a+b) (11)
	All alpha proteins (8)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 170 Structures

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1AGU \| pdb_00001agu	Download File View File

THE SOLUTION NMR STRUCTURE OF THE C10R ADDUCT OF BENZO[A]PYRENE-DIOL-EPOXIDE AT THE N6 POSITION OF ADENINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE

Zegar, I.S., Stone, M.P.

(1996) Biochemistry 35: 6212-6224

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPEPAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

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1HKS \| pdb_00001hks	Download File View File

SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR

Vuister, G.W., Kim, S.-J., Orosz, A., Marquardt, J.L., Wu, C., Bax, A.

(1994) Nat Struct Biol 1: 605-614

Released	1994-09-30
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	HEAT-SHOCK TRANSCRIPTION FACTOR (protein)

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1HKT \| pdb_00001hkt	Download File View File

SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR

Vuister, G.W., Kim, S.-J., Orosz, A., Marquardt, J.L., Wu, C., Bax, A.

(1994) Nat Struct Biol 1: 605-614

Released	1994-09-30
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	HEAT-SHOCK TRANSCRIPTION FACTOR (protein)

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1I7F \| pdb_00001i7f	Download File View File

CRYSTAL STRUCTURE OF THE HSP33 DOMAIN WITH CONSTITUTIVE CHAPERONE ACTIVITY

Kim, S.-J., Jeong, D.-G., Chi, S.-W., Lee, J.-S., Ryu, S.-E.

(2001) Nat Struct Biol 8: 459-466

Released	2001-05-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	HEAT SHOCK PROTEIN 33 (protein)
Unique Ligands	GOL, SO4

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1IY7 \| pdb_00001iy7	Download File View File

Crystal Structure of CPA and sulfamide-based inhibitor complex

Kim, S.J., Woo, J.R., Park, J.D., Kim, D.H., Ryu, S.E.

(2002) J Med Chem 45: 5295-5302

Released	2003-01-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	Carboxypeptidase A (protein)
Unique Ligands	CXA, ZN

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1IZ3 \| pdb_00001iz3	Download File View File

Dimeric structure of FIH (Factor inhibiting HIF)

Lee, C., Kim, S.-J., Jeong, D.-G., Lee, S.M., Ryu, S.-E.

(2003) J Biological Chem 278: 7558-7563

Released	2003-06-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	FIH (protein)
Unique Ligands	SO4

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1IZY \| pdb_00001izy	Download File View File

Crystal structure of Hsp31

Cha, S.S., Lee, S.J.

(2003) J Biological Chem 278: 44552-44559

Released	2003-10-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Hsp31 (protein)

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1IZZ \| pdb_00001izz	Download File View File

Crystal structure of Hsp31

Cha, S.S., Lee, S.J.

(2003) J Biological Chem 278: 44552-44559

Released	2003-10-16
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli
Macromolecule	Hsp31 (protein)

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1J42 \| pdb_00001j42	Download File View File

Crystal Structure of Human DJ-1

Cha, S.S.

(2003) J Biological Chem 278: 44552-44559

Released	2004-02-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	RNA-binding protein regulatory subunit (protein)

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1KU0 \| pdb_00001ku0	Download File View File

Structure of the Bacillus stearothermophilus L1 lipase

Jeong, S.-T., Kim, H.-K., Kim, S.-J., Chi, S.-W., Pan, J.-G., Oh, T.-K., Ryu, S.-E.

(2002) J Biological Chem 277: 17041-17047

Released	2002-08-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	L1 lipase (protein)
Unique Ligands	CA, ZN

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1NM3 \| pdb_00001nm3	Download File View File

Crystal structure of Heamophilus influenza hybrid-Prx5

Kim, S.J., Woo, J.R., Hwang, Y.S., Jeong, D.G., Shin, D.H., Kim, K.H., Ryu, S.E.

(2003) J Biological Chem 278: 10790-10798

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Haemophilus influenzae
Macromolecule	Protein HI0572 (protein)
Unique Ligands	SO4

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1UC7 \| pdb_00001uc7	Download File View File

Crystal structure of DsbDgamma

Kim, J.H., Kim, S.J., Jeong, D.G., Son, J.H., Ryu, S.E.

(2003) FEBS Lett 543: 164-169

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Thiol:disulfide interchange protein dsbD (protein)

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1WOU \| pdb_00001wou	Download File View File

Crystal Structure of human Trp14

Woo, J.R., Kim, S.J., Jeong, W., Cho, Y.H., Lee, S.C., Chung, Y.J., Rhee, S.G., Ryu, S.E.

(2004) J Biological Chem 279: 48120-48125

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	thioredoxin -related protein, 14 kDa (protein)

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1XM2 \| pdb_00001xm2	Download File View File

Crystal structure of Human PRL-1

Jeong, D.G., Kim, S.J., Kim, J.H., Son, J.H., Ryu, S.E.

(2005) J Mol Biology 345: 401-413

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine Phosphatase (protein)
Unique Ligands	SO4

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1YZ4 \| pdb_00001yz4	Download File View File

Crystal structure of DUSP15

Kim, S.J., Ryu, S.E., Jeong, D.G., Yoon, T.S., Kim, J.H., Cho, Y.H., Jeong, S.K., Lee, J.W., Son, J.H.

(2005) Proteins 61: 694-697

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	dual specificity phosphatase-like 15 isoform a (protein)
Unique Ligands	BOG, SO4

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1ZKJ \| pdb_00001zkj	Download File View File

Structural Basis for the Extended Substrate Spectrum of CMY-10, a Plasmid-Encoded Class C beta-lactamase

Cha, S.S., Jung, H.I., An, Y.J., Lee, S.H.

(2006) Mol Microbiol 60: 907-916

Released	2006-04-18
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Klebsiella aerogenes
Macromolecule	extended-spectrum beta-lactamase (protein)
Unique Ligands	ACY, ZN

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1ZZW \| pdb_00001zzw	Download File View File

Crystal Structure of catalytic domain of Human MAP Kinase Phosphatase 5

Jeong, D.G., Yoon, T.S., Kim, J.H., Shim, M.Y., Jeong, S.K., Son, J.H., Ryu, S.E., Kim, S.J.

(2006) J Mol Biology 360: 946-955

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 10 (protein)
Unique Ligands	EDO, SO4

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2E0T \| pdb_00002e0t	Download File View File

Crystal structure of catalytic domain of dual specificity phosphatase 26, MS0830 from Homo sapiens

Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Chen, L., Liu, Z.J., Wang, B.C., Shirozu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2013) Acta Crystallogr D Biol Crystallogr 69: 1160-1170

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity phosphatase 26 (protein)

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2EH7 \| pdb_00002eh7	Download File View File

Crystal structure of humanized KR127 FAB

Chi, S.-W., Kim, S.-J., Maeng, C.-Y., Hong, H.J., Ryu, S.-E.

(2007) Proc Natl Acad Sci U S A 104: 9230-9235

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	HUMANIZED KR127 FAB, HEAVY CHAIN (protein) HUMANIZED KR127 FAB, LIGHT CHAIN (protein)

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2EH8 \| pdb_00002eh8	Download File View File

Crystal structure of the complex of humanized KR127 fab and PRES1 peptide epitope

Chi, S.-W., Kim, S.-J., Maeng, C.-Y., Hong, H.J., Ryu, S.-E.

(2007) Proc Natl Acad Sci U S A 104: 9230-9235

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Hepatitis B virus Mus musculus
Macromolecule	HUMANIZED KR127 FAB, HEAVY CHAIN (protein) HUMANIZED KR127 FAB, LIGHT CHAIN (protein) PreS1/PreS2/surface protein (protein)

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2ESB \| pdb_00002esb	Download File View File

Crystal structure of human DUSP18

Kim, S.J., Ryu, S.E., Jeong, D.G., Cho, Y.H., Yoon, T.S., Kim, J.H.

(2006) Acta Crystallogr D Biol Crystallogr 62: 582-588

Released	2006-06-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 18 (protein)
Unique Ligands	ACT, EPE

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2G6Z \| pdb_00002g6z	Download File View File

Crystal structure of human DUSP5

Kim, S.J., Ryu, S.E.

(2007) Proteins 66: 253-258

Released	2007-01-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 5 (protein)
Unique Ligands	SO4

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2GWO \| pdb_00002gwo	Download File View File

crystal structure of TMDP

Kim, S.J., Ryu, S.E., Kim, J.H.

(2007) Proteins 66: 239-245

Released	2007-03-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 13 (protein)

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2INU \| pdb_00002inu	Download File View File

Crystal structure of Inulin fructotransferase in the absence of substrate

Rhee, S., Jung, W.S.

(2007) J Biological Chem 282: 8414-8423

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus sp. snu-7
Macromolecule	Inulin fructotransferase (protein)
Unique Ligands	2PO

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2INV \| pdb_00002inv	Download File View File

Crystal structure of Inulin fructotransferase in the presence of di-fructose

Rhee, S., Jung, W.S.

(2007) J Biological Chem 282: 8414-8423

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus sp. snu-7
Macromolecule	Inulin fructotransferase (protein)
Unique Ligands	2PO
Unique branched monosaccharides	FRU

1 to 25 of 170 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AGU | pdb_00001agu

1HKS | pdb_00001hks

1HKT | pdb_00001hkt

1I7F | pdb_00001i7f

1IY7 | pdb_00001iy7

1IZ3 | pdb_00001iz3

1IZY | pdb_00001izy

1IZZ | pdb_00001izz

1J42 | pdb_00001j42

1KU0 | pdb_00001ku0

1NM3 | pdb_00001nm3

1UC7 | pdb_00001uc7

1WOU | pdb_00001wou

1XM2 | pdb_00001xm2

1YZ4 | pdb_00001yz4

1ZKJ | pdb_00001zkj

1ZZW | pdb_00001zzw

2E0T | pdb_00002e0t

2EH7 | pdb_00002eh7

2EH8 | pdb_00002eh8

2ESB | pdb_00002esb

2G6Z | pdb_00002g6z

2GWO | pdb_00002gwo

2INU | pdb_00002inu

2INV | pdb_00002inv