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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Li, S."

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Search Summary

This query matches 1,261 Structures.

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Structure Determination Methodology

experimental (1,261)

Scientific Name of Source Organism

	Homo sapiens (460)
	Mus musculus (110)
	synthetic construct (55)
	Severe acute respiratory syndrome coronavirus 2 (44)
	Arabidopsis thaliana (39)
	Meiothermus taiwanensis (36)
	Coxsackievirus B1 (26)
	Mycobacterium tuberculosis H37Rv (25)
	Caenorhabditis elegans (23)
	Pseudomonas aeruginosa PAO1 (22)

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Taxonomy

	Eukaryota (801)
	Bacteria (332)
	Riboviria (224)
	other sequences (56)
	Duplodnaviria (26)
	Monodnaviria (25)
	Varidnaviria (17)
	Eukaryota (eukaryotes) (8)
	Viruses incertae sedis (5)
	Archaea (2)

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Experimental Method

	X-RAY DIFFRACTION (724)
	ELECTRON MICROSCOPY (512)
	SOLUTION NMR (24)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (1,216)
	RNA (100)
	DNA (69)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (56)
	1.5 - 2.0 (200)
	2.0 - 2.5 (246)
	2.5 - 3.0 (210)
	3.0 - 3.5 (254)
	3.5 - 4.0 (161)
	4.0 - 4.5 (44)
	> 4.5 (64)

Release Date

	1990 - 1994 (1)
	2000 - 2004 (47)
	2005 - 2009 (57)
	2010 - 2014 (105)
	2015 - 2019 (311)
	2020 - 2024 (711)
	2025 - 2029 (29)

Enzyme Classification Name

	Transferases (245)
	Hydrolases (236)
	Oxidoreductases (78)
	Ligases (47)
	Isomerases (35)
	Lyases (33)
	Translocases (3)

Membrane Protein Annotation

	PDBTM (107)
	mpstruc (83)
	OPM (78)
	MemProtMD (64)

Symmetry Type

	Asymmetric (762)
	Cyclic (319)
	Icosahedral (80)
	Dihedral (56)
	Helical (11)
	Octahedral (8)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (97)
	All alpha proteins (81)
	Alpha and beta proteins (a/b) (91)
	Alpha and beta proteins (a+b) (58)
	Artifacts (44)
	Membrane and cell surface proteins and peptides (8)
	Small proteins (9)
	Coiled coil proteins (1)
	Peptides (1)

AllSelected

1 to 25 of 1,261 Structures

Page 1 of 51

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1C82 \| pdb_00001c82	Download File View File

MECHANISM OF HYALURONAN BINDING AND DEGRADATION: STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE IN COMPLEX WITH HYALURONIC ACID DISACCHARIDE AT 1.7 A RESOLUTION

Ponnuraj, K., Jedrzejas, M.J.

(2000) J Mol Biology 299: 885-895

Released	2001-04-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	CAC, NA
Unique branched monosaccharides	GCD, NAG

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1EGU \| pdb_00001egu	Download File View File

CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE AT 1.56 A RESOLUTION

Li, S., Kelly, S.J., Lamani, E., Ferraroni, M., Jedrzejas, M.J.

(2000) EMBO J 19: 1228-1240

Released	2001-02-16
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4

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1ESL \| pdb_00001esl	Download File View File

INSIGHT INTO E-SELECTIN(SLASH)LIGAND INTERACTION FROM THE CRYSTAL STRUCTURE AND MUTAGENESIS OF THE LEC(SLASH)EGF DOMAINS

Graves, B.J., Crowther, R.L.

(1994) Nature 367: 532-538

Released	1994-08-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HUMAN E-SELECTIN (protein)
Unique Ligands	CA, CL

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1F1S \| pdb_00001f1s	Download File View File

CRYSTAL STRUCTURE OF STREPTOCOCCUS AGALACTIAE HYALURONATE LYASE AT 2.1 ANGSTROM RESOLUTION.

Li, S., Jedrzejas, M.J.

(2001) J Biological Chem 276: 41407-41416

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus agalactiae
Macromolecule	HYALURONATE LYASE (protein)

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1F70 \| pdb_00001f70	Download File View File

REFINED SOLUTION STRUCTURE OF CALMODULIN N-TERMINAL DOMAIN

Chou, J., Li, S., Bax, A.

(2000) J Biomol NMR 18: 217-227

Released	2000-09-22
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1F71 \| pdb_00001f71	Download File View File

REFINED SOLUTION STRUCTURE OF CALMODULIN C-TERMINAL DOMAIN

Chou, J., Li, S., Bax, A.

(2000) J Biomol NMR 18: 217-227

Released	2000-09-22
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1F9G \| pdb_00001f9g	Download File View File

CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE COCRYSTALLIZED WITH ASCORBIC ACID

Li, S., Jedrzejas, M.J.

(2001) J Biological Chem 276: 15125-15130

Released	2001-05-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	ASC

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1FNJ \| pdb_00001fnj	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF CHORISMATE MUTASE MUTANT C88S/R90K

Kast, P., Grisostomi, C., Chen, I.A., Li, S., Krengel, U., Xue, Y., Hilvert, D.

(2000) J Biological Chem 275: 36832-36838

Released	2000-10-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (CHORISMATE MUTASE) (protein)

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1FNK \| pdb_00001fnk	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF CHORISMATE MUTASE MUTANT C88K/R90S

Kast, P., Grisostomi, C., Chen, I.A., Li, S., Krengel, U., Xue, Y., Hilvert, D.

(2000) J Biological Chem 275: 36832-36838

Released	2000-10-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (CHORISMATE MUTASE) (protein)

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1H52 \| pdb_00001h52	Download File View File

Binding of Phosphate and Pyrophosphate ions at the active site of human Angiogenin as revealed by X-ray Crystallography

Leonidas, D.D., Chavali, G.B., Jardine, A.M., Li, S., Shapiro, R., Acharya, K.R.

(2001) Protein Sci 10: 1669

Released	2001-08-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	POP

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1H53 \| pdb_00001h53	Download File View File

Binding of Phosphate and Pyrophosphate ions at the active site of human Angiogenin as revealed by X-ray Crystallography

Leonidas, D.D., Chavali, G.B., Jardine, A.M., Li, S., Shapiro, R., Acharya, K.R.

(2001) Protein Sci 10: 1669

Released	2001-08-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	CIT, PO4

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1HBY \| pdb_00001hby	Download File View File

Binding of Phosphate and Pyrophosphate ions at the active site of human angiogenin as revealed by X-ray Crystallography

Leonidas, D.D., Chavali, G.B., Jardine, A.S., Li, S., Shapiro, R., Acharya, K.R.

(2001) Protein Sci 10: 1669

Released	2001-08-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	PO4

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1HZ3 \| pdb_00001hz3	Download File View File

ALZHEIMER'S DISEASE AMYLOID-BETA PEPTIDE (RESIDUES 10-35)

Zhang, S., Iwata, K., Lachenmann, M.J., Peng, J.W., Li, S., Stimson, E.R., Lu, Y., Felix, A.M., Maggio, J.E., Lee, J.P.

(2000) J Struct Biol 130: 130-141

Released	2001-01-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	A-BETA AMYLOID (protein)

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1I8Q \| pdb_00001i8q	Download File View File

CRYSTAL STRUCTURE OF STREPTOCOCCUS AGALACTIAE HYALURONATE LYASE COMPLEXED WITH ENZYME PRODUCT, UNSATURATED DISACCHARIDE HYALURONAN

Li, S., Jedrzejas, M.J.

(2001) J Biological Chem 276: 41407-41416

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptococcus agalactiae
Macromolecule	HYALURONATE LYASE (protein)
Unique branched monosaccharides	GC4, NAG

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1J4H \| pdb_00001j4h	Download File View File

crystal structure analysis of the FKBP12 complexed with 000107 small molecule

Li, P., Ding, Y., Wang, L., Wu, B., Shu, C., Li, S., Shen, B., Rao, Z.

(2003) Biophys J 85: 3194-3201

Released	2003-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	FKBP12 (protein)
Unique Ligands	SUB

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1J4I \| pdb_00001j4i	Download File View File

crystal structure analysis of the FKBP12 complexed with 000308 small molecule

Li, P., Ding, Y., Wang, L., Wu, B., Shu, C., Li, S., Shen, B., Rao, Z.

(2003) Biophys J 85: 3194-3201

Released	2003-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	FKBP12 (protein)
Unique Ligands	TST

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1J7O \| pdb_00001j7o	Download File View File

Solution structure of Calcium-calmodulin N-terminal domain

Chou, J.J., Klee, C.B., Bax, A.

(2001) Nat Struct Biol 8: 990-997

Released	2001-11-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Calmodulin (protein)
Unique Ligands	CA

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1J7P \| pdb_00001j7p	Download File View File

Solution structure of Calcium calmodulin C-terminal domain

Chou, J.J., Klee, C.B., Bax, A.

(2001) Nat Struct Biol 8: 990-997

Released	2001-11-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Calmodulin (protein)
Unique Ligands	CA

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1LOH \| pdb_00001loh	Download File View File

Streptococcus pneumoniae Hyaluronate Lyase in Complex with Hexasaccharide Hyaluronan Substrate

Jedrzejas, M.J., Mello, L.V., De Groot, B.L., Li, S.

(2002) J Biological Chem 277: 28287-28297

Released	2002-08-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Hyaluronate Lyase (protein)
Unique branched monosaccharides	BDP, NAG

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1LPL \| pdb_00001lpl	Download File View File

Structural Genomics of Caenorhabditis elegans: CAP-Gly domain of F53F4.3

Li, S., Finley, J., Liu, Z.-J., Qiu, S.H., Luan, C.H., Carson, M., Tsao, J., Johnson, D., Lin, G., Zhao, J., Thomas, W., Nagy, L.A., Sha, B., DeLucas, L.J., Wang, B.-C., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

(2002) J Biological Chem 277: 48596-48601

Released	2002-05-22
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Caenorhabditis elegans
Macromolecule	Hypothetical 25.4 kDa protein F53F4.3 in chromosome V (protein)

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1LXK \| pdb_00001lxk	Download File View File

Streptococcus pneumoniae Hyaluronate Lyase in Complex with Tetrasaccharide Hyaluronan Substrate

Jedrzejas, M.J., Mello, L.V., De Groot, B.L., Li, S.

(2002) J Biological Chem 277: 28287-28297

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Hyaluronate Lyase (protein)
Unique branched monosaccharides	BDP, NAG

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1LXM \| pdb_00001lxm	Download File View File

Crystal Structure of Streptococcus agalactiae Hyaluronate Lyase Complexed with Hexasaccharide Unit of Hyaluronan

Mello, L.V., de Groot, B.L., Li, S., Jedrzejas, M.J.

(2002) J Biological Chem 277: 36678-36688

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptococcus agalactiae
Macromolecule	HYALURONATE Lyase (protein)
Unique branched monosaccharides	BDP, NAG

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1M9C \| pdb_00001m9c	Download File View File

X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) M-type Complex.

Howard, B.R., Vajdos, F.F., Li, S., Sundquist, W.I., Hill, C.P.

(2003) Nat Struct Biol 10: 475-481

Released	2003-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Cyclophilin A (protein) HIV-1 Capsid (protein)

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1M9D \| pdb_00001m9d	Download File View File

X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) O-type chimera Complex.

Howard, B.R., Vajdos, F.F., Li, S., Sundquist, W.I., Hill, C.P.

(2003) Nat Struct Biol 10: 475-481

Released	2003-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Cyclophilin A (protein) HIV-1 Capsid (protein)

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1M9E \| pdb_00001m9e	Download File View File

X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) M-type H87A Complex.

Howard, B.R., Vajdos, F.F., Li, S., Sundquist, W.I., Hill, C.P.

(2003) Nat Struct Biol 10: 475-481

Released	2003-05-27
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Cyclophilin A (protein) HIV-1 Capsid (protein)

1 to 25 of 1,261 Structures

Page 1 of 51

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1C82 | pdb_00001c82

1EGU | pdb_00001egu

1ESL | pdb_00001esl

1F1S | pdb_00001f1s

1F70 | pdb_00001f70

1F71 | pdb_00001f71

1F9G | pdb_00001f9g

1FNJ | pdb_00001fnj

1FNK | pdb_00001fnk

1H52 | pdb_00001h52

1H53 | pdb_00001h53

1HBY | pdb_00001hby

1HZ3 | pdb_00001hz3

1I8Q | pdb_00001i8q

1J4H | pdb_00001j4h

1J4I | pdb_00001j4i

1J7O | pdb_00001j7o

1J7P | pdb_00001j7p

1LOH | pdb_00001loh

1LPL | pdb_00001lpl

1LXK | pdb_00001lxk

1LXM | pdb_00001lxm

1M9C | pdb_00001m9c

1M9D | pdb_00001m9d

1M9E | pdb_00001m9e