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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mandelkow, H."

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Search Summary

This query matches 58 Structures.

Refinements

Structure Determination Methodology

experimental (58)

Scientific Name of Source Organism

	Escherichia coli K-12 (33)
	Klebsiella pneumoniae (17)
	Homo sapiens (10)
	Nostoc punctiforme (7)
	Klebsiella oxytoca (6)
	Escherichia coli (3)
	Escherichia phage T7 (2)
	Escherichia coli O157:H7 (1)
	Escherichia coli S88 (1)
	Gallus gallus (1)

More...

Taxonomy

	Bacteria (45)
	Eukaryota (11)
	Duplodnaviria (2)

Experimental Method

	ELECTRON MICROSCOPY (31)
	X-RAY DIFFRACTION (24)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (56)
	DNA (24)
	RNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (7)
	2.0 - 2.5 (7)
	2.5 - 3.0 (4)
	3.0 - 3.5 (6)
	3.5 - 4.0 (10)
	4.0 - 4.5 (2)
	> 4.5 (16)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (16)
	2010 - 2014 (4)
	2015 - 2019 (9)
	2020 - 2024 (20)
	2025 - 2029 (6)

Enzyme Classification Name

	Transferases (30)
	Hydrolases (3)

Symmetry Type

	Asymmetric (46)
	Cyclic (12)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a+b) (6)
	Artifacts (3)
	All alpha proteins (1)

AllSelected

1 to 25 of 58 Structures

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1E8L \| pdb_00001e8l	Download File View File

NMR solution structure of hen lysozyme

Schwalbe, H., Grimshaw, S.B., Spencer, A., Buck, M., Boyd, J., Dobson, C.M., Redfield, C., Smith, L.J.

(2001) Protein Sci 10: 677-688

Released	2000-10-09
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

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1HWU \| pdb_00001hwu	Download File View File

STRUCTURE OF PII PROTEIN FROM HERBASPIRILLUM SEROPEDICAE

Benelli, E.M., Buck, M., Polikarpov, I., De Souza, E.M., Cruz, L.M., Pedrosa, F.O.

(2002) Eur J Biochem 269: 3296-3303

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Herbaspirillum seropedicae
Macromolecule	PII PROTEIN (protein)

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2BJV \| pdb_00002bjv	Download File View File

Crystal Structure of PspF(1-275) R168A mutant

Rappas, M., Schumacher, J., Beuron, F., Niwa, H., Bordes, P., Wigneshweraraj, S., Keetch, C.A., Robinson, C.V., Buck, M., Zhang, X.

(2005) Science 307: 1972

Released	2005-03-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)

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2BJW \| pdb_00002bjw	Download File View File

PspF AAA domain

Rappas, M., Schumacher, J., Beuron, F., Niwa, H., Bordes, P., Wigneshweraraj, S., Keetch, C.A., Robinson, C.V., Buck, M., Zhang, X.

(2005) Science 307: 1972

Released	2005-03-31
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)

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2C96 \| pdb_00002c96	Download File View File

Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF

Rappas, M., Schumacher, J., Niwa, H., Buck, M., Zhang, X.

(2006) J Mol Biology 357: 481

Released	2006-02-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	ATP

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2C98 \| pdb_00002c98	Download File View File

Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF

Rappas, M., Schumacher, J., Niwa, H., Buck, M., Zhang, X.

(2006) J Mol Biology 357: 481

Released	2006-02-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	ADP

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2C99 \| pdb_00002c99	Download File View File

Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF

Rappas, M., Schumacher, J., Niwa, H., Buck, M., Zhang, X.

(2006) J Mol Biology 357: 481

Released	2006-02-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	ANP

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2C9C \| pdb_00002c9c	Download File View File

Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF

Rappas, M., Schumacher, J., Niwa, H., Buck, M., Zhang, X.

(2006) J Mol Biology 357: 481

Released	2006-02-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	ATP, MG

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2F8W \| pdb_00002f8w	Download File View File

Crystal structure of d(CACGTG)2

Narayana, N., Shamala, N., Ganesh, K.N., Viswamitra, M.A.

(2006) Biochemistry 45: 1200-1211

Released	2006-01-31
Method	X-RAY DIFFRACTION 1.2 Å
Macromolecule	5'-D(CPAPCPGPTPG)-3' (nucleic acid)
Unique Ligands	13D, SPM

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2JPH \| pdb_00002jph	Download File View File

NMR solution structure of the Rho GTPase binding domain of human plexin-b1

Tong, Y., Buck, M.

(2008) Structure 16: 246-258

Released	2008-03-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Plexin-B1 (protein)

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2KSO \| pdb_00002kso	Download File View File

EphA2:SHIP2 SAM:SAM complex

Hota, P.K., Preeti, C., Stetzik, L., Kim, S., Wang, B., Lee, H., Buck, M.

To be published

Released	2011-07-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ephrin type-A receptor 2 (protein) Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 (protein)

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2R2O \| pdb_00002r2o	Download File View File

Crystal structure of the effector domain of human Plexin B1

Tong, Y., Tempel, W., Shen, L., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

(2007) J Biological Chem 282: 37215-37224

Released	2007-09-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Plexin-B1 (protein)
Unique Ligands	UNX

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2VII \| pdb_00002vii	Download File View File

PspF1-275-Mg-AMP

Joly, N., Rappas, M., Buck, M., Zhang, X.

(2008) J Mol Biology 375: 1206

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	AMP, MG

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362D \| pdb_0000362d	Download File View File

THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS

Harper, N.A., Brannigan, J.A., Buck, M., Lewis, R.J., Moore, M.H., Schneider, B.

(1998) Acta Crystallogr D Biol Crystallogr 54: 1273-1284

Released	1997-11-20
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	DNA (5'-D(TPGPCPGPCPA)-3') (nucleic acid)
Unique Ligands	NCO

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3CXL \| pdb_00003cxl	Download File View File

Crystal structure of human chimerin 1 (CHN1)

Shen, L., Buck, M., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Wilkstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	N-chimerin (protein)
Unique Ligands	UNX, ZN

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3H6N \| pdb_00003h6n	Download File View File

Crystal Structure of the ubiquitin-like domain of plexin D1

Tong, Y., Nedyalkova, L., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Buck, M., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2009-05-19
Method	X-RAY DIFFRACTION 2.004 Å
Organisms	Homo sapiens
Macromolecule	Plexin-D1 (protein)
Unique Ligands	ARS, UNX

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3HEI \| pdb_00003hei	Download File View File

Ligand Recognition by A-Class Eph Receptors: Crystal Structures of the EphA2 Ligand-Binding Domain and the EphA2/ephrin-A1 Complex

Himanen, J.P., Goldgur, Y., Miao, H., Myshkin, E., Guo, H., Buck, M., Nguyen, M., Rajashankar, K.R., Wang, B., Nikolov, D.B.

(2009) EMBO Rep 10: 722-728

Released	2009-06-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ephrin type-A receptor 2 (protein) Ephrin-A1 (protein)

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3HM6 \| pdb_00003hm6	Download File View File

Crystal structure of the cytoplasmic domain of human plexin B1

Tong, Y., He, H., Shen, L., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

(2009) J Biological Chem 284: 35962-35972

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.402 Å
Organisms	Homo sapiens
Macromolecule	Plexin-B1 (protein) Unknown peptide (protein)
Unique Ligands	UNX

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3HPN \| pdb_00003hpn	Download File View File

Ligand recognition by A-class EPH receptors: crystal structures of the EPHA2 ligand-binding domain and the EPHA2/EPHRIN-A1 complex

Himanen, J.P., Goldgur, Y., Miao, H., Myshkin, E., Guo, H., Buck, M., Nguyen, M., Rajashankar, K.R., Wang, B., Nikolov, D.B.

(2009) EMBO Rep 10: 722-728

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens
Macromolecule	Ephrin type-A receptor 2 (protein)

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3KUZ \| pdb_00003kuz	Download File View File

Crystal structure of the ubiquitin like domain of PLXNC1

Wang, H., Li, B., Tempel, W., Tong, Y., Guan, X., Zhong, N., Crombet, L., MacKenzie, F., Buck, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Plexin-C1 (protein)
Unique Ligands	UNX

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4QNM \| pdb_00004qnm	Download File View File

CRYSTAL STRUCTURE of PSPF(1-265) E108Q MUTANT

Darbari, V.C., Lawton, E., Lu, D., Burrows, P.C., Wiesler, S., Joly, N., Zhang, N., Zhang, X., Buck, M.

(2014) Nucleic Acids Res 42: 9249-9261

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.628 Å
Organisms	Escherichia coli K-12
Macromolecule	Psp operon transcriptional activator (protein)
Unique Ligands	EPE, GOL

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4QNR \| pdb_00004qnr	Download File View File

CRYSTAL STRUCTURE OF PSPF(1-265) E108Q MUTANT bound to ATP

Darbari, V.C., Lawton, E., Lu, D., Burrows, P.C., Wiesler, S., Joly, N., Zhang, N., Zhang, X., Buck, M.

(2014) Nucleic Acids Res 42: 9249-9261

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.539 Å
Organisms	Escherichia coli K-12
Macromolecule	Psp operon transcriptional activator (protein)
Unique Ligands	ATP, EPE, GOL, MG

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4QOS \| pdb_00004qos	Download File View File

CRYSTAL STRUCTURE OF PSPF(1-265) E108Q MUTANT bound to ADP

Darbari, V.C., Lawton, E., Lu, D., Burrows, P.C., Wiesler, S., Joly, N., Zhang, N., Zhang, X., Buck, M.

(2014) Nucleic Acids Res 42: 9249-9261

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Escherichia coli K-12
Macromolecule	Psp operon transcriptional activator (protein)
Unique Ligands	ADP, EPE, GOL

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5EZK \| pdb_00005ezk	Download File View File

RNA polymerase model placed by Molecular replacement into X-ray diffraction map of DNA-bound RNA Polymerase-Sigma 54 holoenzyme complex.

Darbari, V.C., Yang, Y., Lu, D., Zhang, N., Glyde, R., Wang, Y., Murakami, K.S., Buck, M., Zhang, X.

(2015) Science 349: 882-885

Released	2015-12-16
Method	X-RAY DIFFRACTION 8.5 Å
Organisms	Escherichia coli
Macromolecule	DNA-directed RNA polymerase subunit alpha (protein) DNA-directed RNA polymerase subunit beta (protein) DNA-directed RNA polymerase subunit beta' (protein) DNA-directed RNA polymerase subunit omega (protein)

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5NSR \| pdb_00005nsr	Download File View File

Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex

Glyde, R., Ye, F.Z., Darbari, V.C., Zhang, N., Buck, M., Zhang, X.D.

(2017) Mol Cell 67: 106-116.e4

Released	2017-06-28
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Escherichia coli K-12 Klebsiella pneumoniae
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

1 to 25 of 58 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1E8L | pdb_00001e8l

1HWU | pdb_00001hwu

2BJV | pdb_00002bjv

2BJW | pdb_00002bjw

2C96 | pdb_00002c96

2C98 | pdb_00002c98

2C99 | pdb_00002c99

2C9C | pdb_00002c9c

2F8W | pdb_00002f8w

2JPH | pdb_00002jph

2KSO | pdb_00002kso

2R2O | pdb_00002r2o

2VII | pdb_00002vii

362D | pdb_0000362d

3CXL | pdb_00003cxl

3H6N | pdb_00003h6n

3HEI | pdb_00003hei

3HM6 | pdb_00003hm6

3HPN | pdb_00003hpn

3KUZ | pdb_00003kuz

4QNM | pdb_00004qnm

4QNR | pdb_00004qnr

4QOS | pdb_00004qos

5EZK | pdb_00005ezk

5NSR | pdb_00005nsr