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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Pai, E.F."

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Search Summary

This query matches 977 Structures.

Refinements

Structure Determination Methodology

experimental (977)

Scientific Name of Source Organism

	Homo sapiens (385)
	Severe acute respiratory syndrome coronavirus 2 (131)
	synthetic construct (100)
	Mus musculus (46)
	Lama glama (38)
	Escherichia coli (28)
	Pseudomonas aeruginosa PAO1 (20)
	Saccharomyces cerevisiae S288C (20)
	Vicugna pacos (16)
	African swine fever virus (15)

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Taxonomy

	Eukaryota (535)
	Bacteria (239)
	Riboviria (190)
	other sequences (101)
	Duplodnaviria (53)
	Varidnaviria (32)
	Archaea (22)
	Adnaviria (6)
	Viruses incertae sedis (6)
	unclassified sequences (4)

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Experimental Method

	X-RAY DIFFRACTION (699)
	ELECTRON MICROSCOPY (248)
	SOLUTION NMR (30)

Polymer Entity Type

	Protein (960)
	DNA (45)
	RNA (20)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (54)
	1.5 - 2.0 (212)
	2.0 - 2.5 (226)
	2.5 - 3.0 (234)
	3.0 - 3.5 (134)
	3.5 - 4.0 (54)
	4.0 - 4.5 (18)
	> 4.5 (15)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (6)
	2000 - 2004 (9)
	2005 - 2009 (63)
	2010 - 2014 (154)
	2015 - 2019 (207)
	2020 - 2024 (491)
	2025 - 2029 (46)

Enzyme Classification Name

	Hydrolases (288)
	Transferases (93)
	Oxidoreductases (51)
	Lyases (24)
	Ligases (15)
	Isomerases (9)
	Translocases (7)

Membrane Protein Annotation

	PDBTM (142)
	MemProtMD (99)
	mpstruc (93)
	OPM (60)

Symmetry Type

	Asymmetric (585)
	Cyclic (324)
	Dihedral (43)
	Icosahedral (17)
	Helical (7)
	Octahedral (3)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (81)
	Alpha and beta proteins (a+b) (90)
	Alpha and beta proteins (a/b) (65)
	All alpha proteins (41)
	Artifacts (44)
	Membrane and cell surface proteins and peptides (19)
	Small proteins (5)
	Multi-domain proteins (alpha and beta) (8)

AllSelected

1 to 25 of 977 Structures

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1AZV \| pdb_00001azv	Download File View File

FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN)

Hart, P.J., Liu, H., Pellegrini, M., Nersissian, A.M., Gralla, E.B., Valentine, J.S., Eisenberg, D.

(1998) Protein Sci 7: 545-555

Released	1998-02-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	COPPER/ZINC SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CU, ZN

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1B10 \| pdb_00001b10	Download File View File

SOLUTION NMR STRUCTURE OF RECOMBINANT SYRIAN HAMSTER PRION PROTEIN RPRP(90-231) , 25 STRUCTURES

James, T.L., Liu, H., Ulyanov, N.B., Farr-Jones, S.

(1997) Proc Natl Acad Sci U S A 94: 10086-10091

Released	1998-12-02
Method	SOLUTION NMR
Organisms	Mesocricetus auratus
Macromolecule	PROTEIN (PRION PROTEIN) (protein)

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1BLS \| pdb_00001bls	Download File View File

CRYSTALLOGRAPHIC STRUCTURE OF A PHOSPHONATE DERIVATIVE OF THE ENTEROBACTER CLOACAE P99 CEPHALOSPORINASE: MECHANISTIC INTERPRETATION OF A BETA-LACTAMASE TRANSITION STATE ANALOG

Knox, J.R., Moews, P.C., Lobkovsky, E.

(1994) Biochemistry 33: 6762-6772

Released	1995-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Enterobacter cloacae
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	IPP

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1CEF \| pdb_00001cef	Download File View File

CEFOTAXIME COMPLEXED WITH THE STREPTOMYCES R61 DD-PEPTIDASE

Knox, J.R., Kuzin, A.P.

(1995) Biochemistry 34: 9532-9540

Released	1996-10-14
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE TRANSPEPTIDASE (protein)
Unique Ligands	CEF

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1CEG \| pdb_00001ceg	Download File View File

CEPHALOTHIN COMPLEXED WITH DD-PEPTIDASE

Knox, J.R., Kuzin, A.P.

(1995) Biochemistry 34: 9532-9540

Released	1996-10-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE TRANSPEPTIDASE (protein)
Unique Ligands	CEP

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1FOR \| pdb_00001for	Download File View File

STRUCTURE DETERMINATION OF AN FAB FRAGMENT THAT NEUTRALIZES HUMAN RHINOVIRUS AND ANALYSIS OF THE FAB-VIRUS COMPLEX

Smith, T.J., Liu, H.

(1994) J Mol Biology 240: 127-137

Released	1994-09-30
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Mus musculus
Macromolecule	IGG2A-KAPPA 17-IA FAB (HEAVY CHAIN) (protein) IGG2A-KAPPA 17-IA FAB (LIGHT CHAIN) (protein)

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1HVB \| pdb_00001hvb	Download File View File

CRYSTAL STRUCTURE OF STREPTOMYCES R61 DD-PEPTIDASE COMPLEXED WITH A NOVEL CEPHALOSPORIN ANALOG OF CELL WALL PEPTIDOGLYCAN

McDonough, M.A., Lee, W., Silvaggi, N.R., Mobashery, S., Kelly, J.A.

(2001) Proc Natl Acad Sci U S A 98: 1427-1431

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE (protein)
Unique Ligands	CEH

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1IKG \| pdb_00001ikg	Download File View File

MICHAELIS COMPLEX OF STREPTOMYCES R61 DD-PEPTIDASE WITH A SPECIFIC PEPTIDOGLYCAN SUBSTRATE FRAGMENT

Mcdonough, M.A., Anderson, J.W., Silvaggi, N.R., Pratt, R.F., Knox, J.R., Kelly, J.A.

(2002) J Mol Biology 322: 111-122

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE (protein)
Unique Ligands	REX

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1IKI \| pdb_00001iki	Download File View File

COMPLEX OF STREPTOMYCES R61 DD-PEPTIDASE WITH THE PRODUCTS OF A SPECIFIC PEPTIDOGLYCAN SUBSTRATE FRAGMENT

Mcdonough, M.A., Anderson, J.W., Silvaggi, N.R., Pratt, R.F., Knox, J.R., Kelly, J.A.

(2002) J Mol Biology 322: 111-122

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Streptomyces sp. R61
Macromolecule	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE (protein)
Unique Ligands	DAL, REY

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1MY9 \| pdb_00001my9	Download File View File

Solution structure of a K+ cation stabilized dimeric RNA quadruplex containing two G:G(:A):G:G(:A) hexads, G:G:G:G tetrads and UUUU loops

Liu, H., Matsugami, A., Katahira, M., Uesugi, S.

(2002) J Mol Biology 322: 955-970

Released	2003-10-07
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPAPGPGPUPUPUPUPGPGPAPGPG)-3' (nucleic acid)

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1MYQ \| pdb_00001myq	Download File View File

An intramolecular quadruplex of (GGA)(4) triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction

Matsugami, A., Ouhashi, K., Kanagawa, M., Liu, H., Kanagawa, S., Uesugi, S., Katahira, M.

(2001) J Mol Biology 313: 255-269

Released	2002-10-23
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPAPGPGPAPGPGPAPGPGPA)-3' (nucleic acid)

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1OZ8 \| pdb_00001oz8	Download File View File

Intramolecular higher-order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA

Matsugami, A., Okuizumi, T., Uesugi, S., Katahira, M.

(2003) J Biological Chem 278: 28147-28153

Released	2004-04-08
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPAPGPGPAPGPGPAPGPGPAPGPGPAPGPGPAPGPGPAPGPGPA)-3' (nucleic acid)

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1RVF \| pdb_00001rvf	Download File View File

FAB COMPLEXED WITH INTACT HUMAN RHINOVIRUS

Smith, T.J.

(1996) Nature 383: 350-354

Released	1998-02-25
Method	X-RAY DIFFRACTION 4 Å
Organisms	Human rhinovirus sp. Mus musculus rhinovirus B14
Macromolecule	Unique protein chains: 6

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1ST0 \| pdb_00001st0	Download File View File

Structure of DcpS bound to m7GpppG

Gu, M., Fabrega, C., Liu, S.W., Liu, H., Kiledjian, M., Lima, C.D.

(2004) Mol Cell 14: 67-80

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	mRNA decapping enzyme (protein)
Unique Ligands	GTG, YT3

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1ST4 \| pdb_00001st4	Download File View File

Structure of DcpS bound to m7GpppA

Gu, M., Fabrega, C., Liu, S.W., Liu, H., Kiledjian, M., Lima, C.D.

(2004) Mol Cell 14: 67-80

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	mRNA decapping enzyme (protein)
Unique Ligands	GTA, YT3

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1V0J \| pdb_00001v0j	Download File View File

Udp-galactopyranose mutase from Mycobacterium tuberculosis

Beis, K., Naismith, J.H.

(2005) J Mol Biology 348: 971-982

Released	2005-01-26
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	UDP-GALACTOPYRANOSE MUTASE (protein)
Unique Ligands	BCN, FAD

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1WAM \| pdb_00001wam	Download File View File

Structure of UDP-galactopyranose mutase from Klebsiella Pneumoniae with FADH-

Beis, K., Srikannathasan, V., Naismith, J.H.

(2005) J Mol Biology 348: 971

Released	2006-05-24
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Klebsiella pneumoniae
Macromolecule	UDP-GALACTOPYRANOSE MUTASE (protein)
Unique Ligands	FAD

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1XX2 \| pdb_00001xx2	Download File View File

Refinement of P99 beta-lactamase from Enterobacter cloacae

Knox, J.R., Sun, T.

(1994) Biochemistry 33: 6762-6772

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Enterobacter cloacae
Macromolecule	Beta-lactamase (protein)

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2ALW \| pdb_00002alw	Download File View File

Golgi alpha-mannosidase II complex with Noeuromycin

Kuntz, D.A., Bols, M.B., Liu, H., Rose, D.R.

(2006) Biocatal Biotransformation 34: 55-61

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase II (protein)
Unique Ligands	MNM, MPD, NAG, ZN

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2BI7 \| pdb_00002bi7	Download File View File

udp-galactopyranose mutase from Klebsiella pneumoniae oxidised FAD

Beis, K., Srikannathasan, V., Naismith, J.

(2005) J Mol Biology 348: 971

Released	2005-05-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Klebsiella pneumoniae
Macromolecule	UDP-GALACTOPYRANOSE MUTASE (protein)
Unique Ligands	FAD

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2BI8 \| pdb_00002bi8	Download File View File

udp-galactopyranose mutase from Klebsiella pneumoniae with reduced FAD

Beis, K., Srikannathasan, V., Naismith, J.H.

(2005) J Mol Biology 348: 971

Released	2005-05-05
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Klebsiella pneumoniae
Macromolecule	UDP-GALACTOPYRANOSE MUTASE (protein)
Unique Ligands	FAD

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2BKQ \| pdb_00002bkq	Download File View File

NEDD8 protease

Shen, L.N., Liu, H., Dong, C., Xirodimas, D., Naismith, J.H., Hay, R.T.

(2005) EMBO J 24: 1341

Released	2005-02-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SENTRIN-SPECIFIC PROTEASE 8 (protein)

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2BKR \| pdb_00002bkr	Download File View File

NEDD8 NEDP1 complex

Shen, L.N., Liu, H., Dong, C., Xirodimas, D., Naismith, J.H., Hay, R.T.

(2005) EMBO J 24: 1341

Released	2005-09-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	NEDDYLIN (protein) SENTRIN-SPECIFIC PROTEASE 8 (protein)

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2CKG \| pdb_00002ckg	Download File View File

The structure of SENP1 SUMO-2 co-complex suggests a structural basis for discrimination between SUMO paralogues during processing

Dong, C., Naismith, J.H.

(2006) Biochem J 397: 279

Released	2006-04-26
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	SENTRIN-SPECIFIC PROTEASE 1 (protein)

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2CKH \| pdb_00002ckh	Download File View File

SENP1-SUMO2 complex

Shen, L.N., Dong, C., Liu, H., Hay, R.T., Naismith, J.H.

(2006) Biochem J 397: 279

Released	2006-04-26
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	SENTRIN-SPECIFIC PROTEASE 1 (protein) SMALL UBIQUITIN-RELATED MODIFIER 2 (protein)

1 to 25 of 977 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AZV | pdb_00001azv

1B10 | pdb_00001b10

1BLS | pdb_00001bls

1CEF | pdb_00001cef

1CEG | pdb_00001ceg

1FOR | pdb_00001for

1HVB | pdb_00001hvb

1IKG | pdb_00001ikg

1IKI | pdb_00001iki

1MY9 | pdb_00001my9

1MYQ | pdb_00001myq

1OZ8 | pdb_00001oz8

1RVF | pdb_00001rvf

1ST0 | pdb_00001st0

1ST4 | pdb_00001st4

1V0J | pdb_00001v0j

1WAM | pdb_00001wam

1XX2 | pdb_00001xx2

2ALW | pdb_00002alw

2BI7 | pdb_00002bi7

2BI8 | pdb_00002bi8

2BKQ | pdb_00002bkq

2BKR | pdb_00002bkr

2CKG | pdb_00002ckg

2CKH | pdb_00002ckh