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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Perbandt, M."

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Search Summary

This query matches 159 Structures.

Refinements

Structure Determination Methodology

experimental (159)

Scientific Name of Source Organism

	Klebsiella pneumoniae (30)
	Daboia russelii pulchella (12)
	enterovirus D68 (9)
	Bos taurus (8)
	Thaumatococcus daniellii (8)
	Plasmodium falciparum (7)
	Severe acute respiratory syndrome coronavirus 2 (6)
	Parengyodontium album (5)
	Daboia russelii russelii (4)
	Fusarium haematococcum (4)

More...

Taxonomy

	Eukaryota (81)
	Bacteria (53)
	Riboviria (16)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (159)

Polymer Entity Type

	Protein (144)
	RNA (15)

Refinement Resolution (Å)

	0.5 - 1.0 (4)
	1.0 - 1.5 (33)
	1.5 - 2.0 (69)
	2.0 - 2.5 (33)
	2.5 - 3.0 (16)
	3.0 - 3.5 (4)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (29)
	2005 - 2009 (35)
	2010 - 2014 (22)
	2015 - 2019 (24)
	2020 - 2024 (46)

Enzyme Classification Name

	Hydrolases (94)
	Transferases (15)
	Lyases (7)
	Oxidoreductases (5)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (93)
	Cyclic (42)
	Dihedral (13)

SCOP Classification

	All alpha proteins (35)
	Alpha and beta proteins (a/b) (26)
	All beta proteins (33)
	Alpha and beta proteins (a+b) (15)
	Artifacts (19)
	Small proteins (4)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 159 Structures

Page 1 of 7

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1AOK \| pdb_00001aok	Download File View File

VIPOXIN COMPLEX

Perbandt, M., Wilson, J.C., Eschenburg, S., Betzel, C.

(1997) FEBS Lett 412: 573-577

Released	1998-01-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vipera ammodytes meridionalis
Macromolecule	VIPOXIN COMPLEX (protein)
Unique Ligands	ACT

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1CE7 \| pdb_00001ce7	Download File View File

MISTLETOE LECTIN I FROM VISCUM ALBUM

Krauspenhaar, R., Eschenburg, S., Perbandt, M., Kornilov, V., Konareva, N., Mikailova, I., Stoeva, S., Wacker, R., Maier, T., Singh, T.P., Mikhailov, A., Voelter, W., Betzel, C.

(1999) Biochem Biophys Res Commun 257: 418-424

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Viscum album
Macromolecule	PROTEIN (RIBOSOME-INACTIVATING PROTEIN TYPE II) (protein)
Unique Ligands	NAG

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1FV0 \| pdb_00001fv0	Download File View File

FIRST STRUCTURAL EVIDENCE OF THE INHIBITION OF PHOSPHOLIPASE A2 BY ARISTOLOCHIC ACID: CRYSTAL STRUCTURE OF A COMPLEX FORMED BETWEEN PHOSPHOLIPASE A2 AND ARISTOLOCHIC ACID

Chandra, V., Jasti, J., Kaur, P., Srinivasan, A., Betzel, C., Singh, T.P.

(2002) Biochemistry 41: 10914-10919

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Daboia russelii pulchella
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	9AR, ACT, DIO, GOL, SO4

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1G8T \| pdb_00001g8t	Download File View File

SM ENDONUCLEASE FROM SERATIA MARCENSCENS AT 1.1 A RESOLUTION

Lunin, V.V., Perbandt, M., Betzel, C.H., Mikhailov, A.M.

(2000) Acta Crystallogr D Biol Crystallogr 56: 567-572

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Serratia marcescens
Macromolecule	NUCLEASE SM2 ISOFORM (protein)
Unique Ligands	MG, SO4

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1IC6 \| pdb_00001ic6	Download File View File

STRUCTURE OF A SERINE PROTEASE PROTEINASE K FROM TRITIRACHIUM ALBUM LIMBER AT 0.98 A RESOLUTION

Betzel, C., Gourinath, S., Kumar, P., Kaur, P., Perbandt, M., Eschenburg, S., Singh, T.P.

(2001) Biochemistry 40: 3080-3088

Released	2001-04-11
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Parengyodontium album
Macromolecule	PROTEINASE K (protein)
Unique Ligands	CA, NO3

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1JQ9 \| pdb_00001jq9	Download File View File

Crystal structure of a complex formed between phospholipase A2 from Daboia russelli pulchella and a designed pentapeptide Phe-Leu-Ser-Tyr-Lys at 1.8 resolution

Chandra, V., Jasti, J., Kaur, P., Dey, S., Betzel, C., Singh, T.P.

(2002) J Biological Chem 277: 41079-41085

Released	2002-11-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Daboia russelii pulchella
Macromolecule	Peptide inhibitor (protein) Phospholipase A2 (protein)
Unique Ligands	ACY

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1L3P \| pdb_00001l3p	Download File View File

CRYSTAL STRUCTURE OF THE FUNCTIONAL DOMAIN OF THE MAJOR GRASS POLLEN ALLERGEN Phl p 5b

Rajashankar, K.R., Bufe, A., Weber, W., Eschenburg, S., Lindner, B., Betzel, C.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1175-1181

Released	2003-02-28
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Phleum pratense
Macromolecule	POLLEN ALLERGEN Phl p 5b (protein)
Unique Ligands	MG, PO4

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1LNL \| pdb_00001lnl	Download File View File

Structure of deoxygenated hemocyanin from Rapana thomasiana

Perbandt, M., Guthoehrlein, E.W., Rypniewski, W., Idakieva, K., Stoeva, S., Voelter, W., Genov, N., Betzel, C.

(2003) Biochemistry 42: 6341-6346

Released	2003-06-03
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Rapana venosa
Macromolecule	hemocyanin (protein)
Unique Ligands	CU, NAG

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1OQS \| pdb_00001oqs	Download File View File

Crystal Structure of RV4/RV7 Complex

Perbandt, M., Betzel, C.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1679-1687

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Daboia siamensis
Macromolecule	Phospholipase A2 RV-4 (protein) Phospholipase A2 RV-7 (protein)

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1OXG \| pdb_00001oxg	Download File View File

Crystal structure of a complex formed between organic solvent treated bovine alpha-chymotrypsin and its autocatalytically produced highly potent 14-residue peptide at 2.2 resolution

Singh, N., Jabeen, T., Sharma, S., Roy, I., Gupta, M.N., Bilgrami, S., Singh, T.P.

(2005) FEBS J 272: 562-572

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	Chymotrypsinogen A (protein)
Unique Ligands	SO4

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1P7V \| pdb_00001p7v	Download File View File

Structure of a complex formed between Proteinase K and a designed heptapeptide inhibitor Pro-Ala-Pro-Phe-Ala-Ala-Ala at atomic resolution

Bilgrami, S., Kaur, P., Chandra, V., Banumathi, S., Perbandt, M., Betzel, C., Singh, T.P.

To be published

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Parengyodontium album
Macromolecule	inhibitor peptide (protein) proteinase K (protein)
Unique Ligands	CA, NO3

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1P7W \| pdb_00001p7w	Download File View File

Crystal structure of the complex of Proteinase K with a designed heptapeptide inhibitor Pro-Ala-Pro-Phe-Ala-Ser-Ala at atomic resolution

Bilgrami, S., Perbandt, M., Chandra, V., Banumathi, S., Kaur, P., Betzel, C., Singh, T.P.

To be published

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Parengyodontium album
Macromolecule	inhibitor peptide (protein) proteinase K (protein)
Unique Ligands	CA, NO3

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1PA3 \| pdb_00001pa3	Download File View File

Crystal Structure of Glutathione-S-transferase from Plasmodium falciparum

Perbandt, M., Betzel, C., Liebau, E.

(2004) J Biological Chem 279: 1336-1342

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Plasmodium falciparum
Macromolecule	Glutathione s-transferase, putative (protein)

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1Q4J \| pdb_00001q4j	Download File View File

Crystal Structure of Pf-GST1 with its inhibitor s-hexyl-GSH

Perbandt, M., Betzel, C., Liebau, E.

(2004) J Biological Chem 279: 1336-1342

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Plasmodium falciparum
Macromolecule	Glutathione s-transferase (protein)
Unique Ligands	GTX

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1Q5T \| pdb_00001q5t	Download File View File

Gln48 PLA2 separated from Vipoxin from the venom of Vipera ammodytes meridionalis.

Georgieva, D.N., Perbandt, M., Rypniewski, W., Hristov, K., Genov, N., Betzel, C.

(2004) Biochem Biophys Res Commun 316: 33-38

Released	2004-05-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vipera ammodytes meridionalis
Macromolecule	Phospholipase A2 inhibitor (protein)
Unique Ligands	SO4

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1QL0 \| pdb_00001ql0	Download File View File

Sm Endonuclease from Seratia marcenscens at atomic resolution

Perbandt, M., Mikhailov, A.M., Betzel, C.H.

(2000) Acta Crystallogr D Biol Crystallogr 56: 567

Released	2000-05-07
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Serratia marcescens
Macromolecule	NUCLEASE (protein)
Unique Ligands	MG

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1R3O \| pdb_00001r3o	Download File View File

Crystal structure of the first RNA duplex in L-conformation at 1.9A resolution

Vallazza, M., Perbandt, M., Klussmann, S., Rypniewski, W., Erdmann, V.A., Betzel, C.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1-7

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	L-RNA (nucleic acid)

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1S6B \| pdb_00001s6b	Download File View File

X-ray Crystal Structure of a Complex Formed Between Two Homologous Isoforms of Phospholipase A2 from Naja naja sagittifera: Principle of Molecular Association and Inactivation

Jabeen, T., Sharma, S., Singh, R.K., Kaur, P., Singh, T.P.

(2005) Proteins 59: 856-863

Released	2004-02-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Naja sagittifera
Macromolecule	Phospholipase A2 isoform 1 (protein) Phospholipase A2 isoform 2 (protein)
Unique Ligands	ACY, CA, PO4

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1SKG \| pdb_00001skg	Download File View File

Structure-based rational drug design: Crystal structure of the complex formed between Phospholipase A2 and a pentapeptide Val-Ala-Phe-Arg-Ser

Ethayathulla, A.S., Singh, N., Sharma, S., Makker, J., Dey, S., Perbandt, M., Betzel, C., Singh, T.P.

To be published

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.21 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 (protein) VAFRS (protein)
Unique Ligands	MOH, SO4

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1SV3 \| pdb_00001sv3	Download File View File

Structure of the complex formed between Phospholipase A2 and 4-methoxybenzoic acid at 1.3A resolution.

Singh, N., Prahathees, E., Jabeen, T., Pal, A., Ethayathulla, A.S., Prem kumar, R., Sharma, S., Singh, T.P.

(2006) Proteins 64: 89-100

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 (protein)
Unique Ligands	ANN, SO4

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1TDV \| pdb_00001tdv	Download File View File

Non-specific binding to phospholipase A2:Crystal structure of the complex of PLA2 with a designed peptide Tyr-Trp-Ala-Ala-Ala-Ala at 1.7A resolution

Singh, N., Jabeen, T., Ethayathulla, A.S., Somvanshi, R.K., Sharma, S., Dey, S., Perbandt, M., Betzel, C., Singh, T.P.

To be published

Released	2004-06-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein) YWAAAA (protein)
Unique Ligands	SO4

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1TEJ \| pdb_00001tej	Download File View File

Crystal structure of a disintegrin heterodimer at 1.9 A resolution.

Bilgrami, S., Kaur, P., Yadav, S., Perbandt, M., Betzel, C., Singh, T.P.

(2005) Biochemistry 44: 11058-11066

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Echis carinatus
Macromolecule	disintegrin chain A (protein) disintegrin chain B (protein)

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1TG1 \| pdb_00001tg1	Download File View File

Crystal Structure of the complex formed between russells viper phospholipase A2 and a designed peptide inhibitor PHQ-Leu-Val-Arg-Tyr at 1.2A resolution

Singh, N., Kaur, P., Somvanshi, R.K., Sharma, S., Dey, S., Perbandt, M., Betzel, C., Singh, T.P.

To be published

Released	2004-06-08
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Daboia russelii russelii synthetic construct
Macromolecule	Phospholipase A2 (protein) peptide inhibitor (protein)
Unique Ligands	ACY, MOH, SO4

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1TG4 \| pdb_00001tg4	Download File View File

Design of specific inhibitors of groupII phospholipase A2(PLA2): Crystal structure of the complex formed between russells viper PLA2 and designed peptide Phe-Leu-Ala-Tyr-Lys at 1.7A resolution

Singh, N., Somvanshi, R.K., Sharma, S., Dey, S., Perbandt, M., Betzel, C., Ethayathulla, A.S., Singh, T.P.

To be published

Released	2004-06-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Daboia russelii russelii
Macromolecule	FLAYK peptide (protein) Phospholipase A2 (protein)
Unique Ligands	SO4