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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Secchi, A."

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Search Summary

This query matches 70 Structures.

Refinements

Structure Determination Methodology

experimental (70)

Scientific Name of Source Organism

	Homo sapiens (39)
	synthetic construct (10)
	Octodon degus (2)
	Plasmodium falciparum (2)
	Saccharomyces cerevisiae (2)
	Homo (1)
	Mus musculus (1)
	Odocoileus hemionus (1)
	Vibrio cholerae (1)
	human papillomavirus 52 (1)

Taxonomy

	Eukaryota (48)
	other sequences (10)
	Bacteria (1)
	Monodnaviria (1)

Experimental Method

	SOLUTION NMR (69)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

	DNA (49)
	Protein (14)
	RNA (8)

Refinement Resolution (Å)

2.0 - 2.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (14)
	2015 - 2019 (28)
	2020 - 2024 (24)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (1)

SCOP Classification

	All alpha proteins (2)
	Artifacts (2)

AllSelected

1 to 25 of 70 Structures

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1LVS	Download File View File

THE SOLUTION STRUCTURE OF D(G4T4G3)2

Crnugelj, M., Hud, N.V., Plavec, J.

(2002) J Mol Biology 320: 911-924

Released	2002-07-24
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGP*G)-3' (nucleic acid)

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1U64	Download File View File

The Solution Structure of d(G3T4G4)2

Sket, P., Crnugelj, M., Plavec, J.

(2004) Bioorg Med Chem 12: 5735-5744

Released	2004-10-26
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPGPTPTPTPTPGPGPGP*G)-3' (nucleic acid)

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1XV6	Download File View File

The solution structure of 2',5'-linked 3'-O-(2-methoxyethyl)-RNA hairpin

Plevnik, M., Gdaniec, Z., Plavec, J.

(2005) Nucleic Acids Res 33: 1749-1759

Released	2005-04-05
Method	SOLUTION NMR
Macromolecule	5'-R((C2L)P(G2L)P(C2L)P(G2L)P(A2L)P(A2L)P(U2L)P(U2L)P(C2L)P(G2L)P(C2L)P(G2L))-2' (nucleic acid)

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2JXV	Download File View File

Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans

Cevec, M., Thibaudeau, C., Plavec, J.

(2008) Nucleic Acids Res 36: 2330-2337

Released	2008-04-29
Method	SOLUTION NMR
Macromolecule	RNA (33-MER) (nucleic acid)

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2KPV	Download File View File

NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans

Cevec, M., Thibaudeau, C., Plavec, J.

(2010) Nucleic Acids Res 38: 7814-7821

Released	2010-08-04
Method	SOLUTION NMR
Macromolecule	RNA (34-MER) (nucleic acid)

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2KUN	Download File View File

Three dimensional structure of HuPrP(90-231 M129 Q212P)

Ilc, G., Giachin, G., Jaremko, M., Jaremko, L., Zhukov, I., Plavec, J., Legname, G., Benetti, F.

(2010) PLoS One 5: e11715-e11715

Released	2010-08-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2KWG	Download File View File

Solution structure of a fully modified 2'-F/2'-OMe siRNA construct

Podbevsek, P., Bhat, B., Plavec, J.

(2010) Nucleic Acids Res 38: 7298-7307

Released	2010-07-21
Method	SOLUTION NMR
Macromolecule	5'-R((GF2)P(OMG)P(GF2)P(OMU)P(AF2)P(A2M)P(AF2)P(OMU)P(AF2)P(OMC)P(AF2)P(OMU)P(UFT)P(OMC)P(UFT)P(OMU)P(CFZ)P(A2M)P(UFT)P(OMU)P(UFT))-3' (nucleic acid) 5'-R(P(A2M)P(UFT)P(OMG)P(AF2)P(A2M)P(GF2)P(A2M)P(AF2)P(OMU)P(GF2)P(OMU)P(AF2)P(OMU)P(UFT)P(OMU)P(AF2)P(OMC)P(CFZ)P(OMC)P(UFT)P(OMU))-3' (nucleic acid)

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2LED	Download File View File

Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene

Trajkovski, M., Plavec, J., Webba da Silva, M.

(2012) J Am Chem Soc 134: 4132-4141

Released	2012-03-14
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPAPGPGPGPCPGPGPGPAPGPGPGPAPGPGPGPAP*A)-3') (nucleic acid)

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2LEE	Download File View File

Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene

Trajkovski, M., Plavec, J., Webba da Silva, M.

(2012) J Am Chem Soc 134: 4132-4141

Released	2012-03-14
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPAPGPGPGPCPGPGPGPAPGPGPGPAPGPGPGPAP*A)-3') (nucleic acid)

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2LEJ	Download File View File

human prion protein mutant HuPrP(90-231, M129, V210I)

Biljan, I., Ilc, G., Giachin, G., Raspadori, A., Zhukov, I., Plavec, J., Legname, G.

(2011) J Mol Biology 412: 660-673

Released	2011-08-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2LFT	Download File View File

Human prion protein with E219K protective polymorphism

Biljan, I., Ilc, G., Giacin, G., Zhukov, I., Plavec, J., Legname, G.

(2012) Biochem J 446: 243-251

Released	2012-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2LOD	Download File View File

Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops

Marusic, M., Sket, P., Bauer, L., Viglasky, V., Plavec, J.

(2012) Nucleic Acids Res 40: 6946-6956

Released	2012-05-30
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPGPAPTPGPGPGPAPCPAPCPAPGPGPGPGPAPCPGPGPG)-3') (nucleic acid)

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2LSB	Download File View File

Solution-state NMR structure of the human prion protein

Biljan, I., Ilc, G., Giancin, G., Zhukov, I., Plavec, J., Legname, G.

(2012) Biochem J 446: 243-251

Released	2012-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2LV1	Download File View File

Solution-state NMR structure of prion protein mutant V210I at neutral pH

Biljan, I., Ilc, G., Giachin, G., Legname, G., Plavec, J.

(2012) Biochemistry 51: 7465-7474

Released	2012-09-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2M39	Download File View File

The solution structure of 3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX

Plevnik, M., Cevec, M., Plavec, J.

(2013) Biochimie 95: 2385-2391

Released	2013-11-27
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R((C5L)P(G48)P(C5L)P(G48)P(A44)P(A44)P(T39)P(T39)P(C5L)P(G48)P(C5L)PDG)-3') (nucleic acid)

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2M53	Download File View File

G-rich VEGF aptamer with LNA modifications

Marusic, M., Veedu, R.N., Plavec, J.

(2013) Nucleic Acids Res 41: 9524-9536

Released	2013-08-28
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	G-rich VEGF aptamer (nucleic acid)

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2MAE	Download File View File

Transmembrane-cytosolic part of Trop2 explored by NMR and Molecular Dynamics

Vidmar, T., Pavi, M., Ilc, G., Plavec, J., Lenari, B.

To be published

Released	2014-07-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tumor-associated calcium signal transducer 2 (protein)

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2MJJ	Download File View File

A tetrahelical DNA fold adopted by alternating GGG and GCG tracts

Kocman, V., Plavec, J.

(2014) Nat Commun 5: 5831-5831

Released	2014-12-24
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPGPAPGPCPGPAPGPGPGPAPGPCP*G)-3' (nucleic acid)

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2MVK	Download File View File

Solution structure of phosphorylated cytosolic part of Trop2

Ilc, G., Plavec, J., Vidmar, T., Pavsic, M., Lenarcic, B.

(2015) Sci Rep 5: 10324-10324

Released	2015-05-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tumor-associated calcium signal transducer 2 (protein)

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2MVL	Download File View File

Solution structure of cytosolic part of Trop2

Ilc, G., Plavec, J., Vidmar, T., Pavsic, M., Lenarcic, B.

(2015) Sci Rep 5: 10324-10324

Released	2015-05-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tumor-associated calcium signal transducer 2 (protein)

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2N2D	Download File View File

Structure of DNA G-quadruplex adopted by ALS and FTD related GGGGCC repeat with G21 to Br-G21 substitution

Brcic, J., Plavec, J.

(2015) Nucleic Acids Res 43: 8590-8600

Released	2015-09-23
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPGPGPGPCPCPGPGPGPGPCPCPGPGPGPGPCPCPGPGP(BGM)PG)-3') (nucleic acid)

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2N8Y	Download File View File

Holo form of Calmodulin-Like Domain of Human Non-Muscle alpha-actinin 1

Drmota Prebil, S., Slapsak, U., de Almeida Ribeiro, E., Pavsic, M., Ilc, G., Zielinska, K., Hartl, M., Backman, L., Plavec, J., Lenarcic, B., Djinovic-Carugo, K.

(2016) Sci Rep 6: 27383-27383

Released	2016-06-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-actinin-1 (protein)
Unique Ligands	CA

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2N8Z	Download File View File

Apo form of Calmodulin-Like Domain of Human Non-Muscle alpha-actinin 1

Drmota Prebil, S., Slapsak, U., de Almeida Ribeiro, E., Pavsic, M., Ilc, G., Zielinska, K., Hartl, M., Backman, L., Plavec, J., Lenarcic, B., Djinovic-Carugo, K.

(2016) Sci Rep 6: 27383-27383

Released	2016-06-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-actinin-1 (protein)

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5L6R	Download File View File

PrP226* - Solution-state NMR structure of truncated human prion protein

Kovac, V., Zupancic, B., Ilc, G., Curin Serbec, V., Plavec, J.

(2017) Biochem Biophys Res Commun 484: 45-50

Released	2016-10-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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5LIG	Download File View File

G-Quadruplex formed at the 5'-end of NHEIII_1 Element in human c-MYC promoter bound to triangulenium based fluorescence probe DAOTA-M2

Kotar, A., Wang, B., Shivalingam, A., Gonzalez-Garcia, J., Vilar, R., Plavec, J.

(2016) Angew Chem Int Ed Engl 55: 12508-12511

Released	2016-09-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA (5'-D(TPAPGPGPGPAPGPGPGPTPAPGPGPGPAPGPGPGP*T)-3') (nucleic acid)
Unique Ligands	6XM