RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Strynadka, N.C."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 208 Structures.

Refinements

Structure Determination Methodology

experimental (208)

Scientific Name of Source Organism

	Escherichia coli (44)
	Klebsiella pneumoniae (14)
	Staphylococcus aureus (14)
	Escherichia coli K-12 (13)
	Salmonella enterica subsp. enterica serovar Typhimurium (13)
	Neisseria meningitidis (7)
	Niallia circulans (7)
	Penicillium janthinellum (7)
	Pseudomonas aeruginosa (6)
	Rhodococcus sp. (in: high G+C Gram-positive bacteria) (6)

More...

Taxonomy

	Bacteria (195)
	Eukaryota (14)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (192)
	ELECTRON MICROSCOPY (10)
	SOLUTION NMR (6)

Polymer Entity Type

Protein (208)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (72)
	2.0 - 2.5 (66)
	2.5 - 3.0 (30)
	3.0 - 3.5 (10)
	3.5 - 4.0 (3)
	4.0 - 4.5 (2)
	> 4.5 (6)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (7)
	2000 - 2004 (49)
	2005 - 2009 (49)
	2010 - 2014 (51)
	2015 - 2019 (48)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (82)
	Transferases (48)
	Oxidoreductases (13)
	Isomerases (2)
	Translocases (2)

Membrane Protein Annotation

	mpstruc (15)
	PDBTM (11)
	MemProtMD (8)
	OPM (8)

Symmetry Type

	Asymmetric (140)
	Cyclic (85)
	Dihedral (16)
	Helical (1)

SCOP Classification

	All beta proteins (39)
	Alpha and beta proteins (a+b) (42)
	Multi-domain proteins (alpha and beta) (35)
	Alpha and beta proteins (a/b) (31)
	Artifacts (9)
	All alpha proteins (7)
	Membrane and cell surface proteins and peptides (6)
	Small proteins (1)
	Peptides (1)

AllSelected

1 to 25 of 208 Structures

Page 1 of 9

Sort by

Explore in 3D

1AVS \| pdb_00001avs	Download File View File

X-RAY CRYSTALLOGRAPHIC STUDY OF CALCIUM-SATURATED N-TERMINAL DOMAIN OF TROPONIN C

Strynadka, N.C.J., James, M.N.G.

(1997) J Mol Biology 273: 238-255

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Gallus gallus
Macromolecule	TROPONIN C (protein)
Unique Ligands	CA

Explore in 3D

1B12 \| pdb_00001b12	Download File View File

CRYSTAL STRUCTURE OF TYPE 1 SIGNAL PEPTIDASE FROM ESCHERICHIA COLI IN COMPLEX WITH A BETA-LACTAM INHIBITOR

Paetzel, M., Dalbey, R., Strynadka, N.C.J.

(1998) Nature 396: 186-190

Released	1999-12-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	SIGNAL PEPTIDASE I (protein)
Unique Ligands	1PN, PO4

Explore in 3D

1DLI \| pdb_00001dli	Download File View File

THE FIRST STRUCTURE OF UDP-GLUCOSE DEHYDROGENASE (UDPGDH) REVEALS THE CATALYTIC RESIDUES NECESSARY FOR THE TWO-FOLD OXIDATION

Campbell, R.E., Mosimann, S.C., van de Rijn, I., Tanner, M.E., Strynadka, N.C.J.

(2000) Biochemistry 39: 7012-7023

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Streptococcus pyogenes
Macromolecule	UDP-GLUCOSE DEHYDROGENASE (protein)
Unique Ligands	GOL, NAD, SO4, UDX

Explore in 3D

1DLJ \| pdb_00001dlj	Download File View File

THE FIRST STRUCTURE OF UDP-GLUCOSE DEHYDROGENASE (UDPGDH) REVEALS THE CATALYTIC RESIDUES NECESSARY FOR THE TWO-FOLD OXIDATION

Campbell, R.E., Mosimann, S.C., van de Rijn, I., Tanner, M.E., Strynadka, N.C.J.

(2000) Biochemistry 39: 7012-7023

Released	2000-05-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus pyogenes
Macromolecule	UDP-GLUCOSE DEHYDROGENASE (protein)
Unique Ligands	GOL, NAI, SO4, UGA

Explore in 3D

1EAI \| pdb_00001eai	Download File View File

COMPLEX OF ASCARIS CHYMOTRPSIN/ELASTASE INHIBITOR WITH PORCINE ELASTASE

Huang, K., Strynadka, N.C.J., Bernard, V.D., Peanasky, R.J., James, M.N.G.

(1994) Structure 2: 679-689

Released	1999-04-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Ascaris suum Sus scrofa
Macromolecule	PROTEIN (CHYMOTRYPSIN/ELASTASE ISOINHIBITOR 1) (protein) PROTEIN (ELASTASE) (protein)

Explore in 3D

1ERM \| pdb_00001erm	Download File View File

X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHANE BORONIC ACID

Ness, S., Martin, R., Kindler, A.M., Paetzel, M., Gold, M., Jones, J.B., Strynadka, N.C.J.

(2000) Biochemistry 39: 5312-5321

Released	2000-05-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	TEM-1 BETA-LACTAMASE (protein)
Unique Ligands	BJI

Explore in 3D

1ERO \| pdb_00001ero	Download File View File

X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-2-PHENYLACETAMIDO-2-(3-CARBOXYPHENYL)ETHYL BORONIC ACID

Ness, S., Martin, R., Kindler, A.M., Paetzel, M., Gold, M., Jones, J.B., Strynadka, N.C.J.

(2000) Biochemistry 39: 5312-5321

Released	2000-05-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	TEM-1 BETA-LACTAMASE (protein)
Unique Ligands	BJP

Explore in 3D

1ERQ \| pdb_00001erq	Download File View File

X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2-(3-CARBOXY-2-HYDROXYPHENYL)ETHYL BORONIC ACID

Ness, S., Martin, R., Kindler, A.M., Paetzel, M., Gold, M., Jones, J.B., Strynadka, N.C.J.

(2000) Biochemistry 39: 5312-5321

Released	2000-05-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	TEM-1 BETA-LACTAMASE (protein)
Unique Ligands	BJH

Explore in 3D

1EYR \| pdb_00001eyr	Download File View File

Structure of a sialic acid activating synthetase, CMP acylneuraminate synthetase in the presence and absence of CDP

Mosimann, S.C., Gilbert, M., Dombrowski, D., Wakarchuk, W., Strynadka, N.C.

(2001) J Biological Chem 276: 8190-8196

Released	2001-02-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Neisseria meningitidis
Macromolecule	CMP-N-ACETYLNEURAMINIC ACID SYNTHETASE (protein)
Unique Ligands	CDP

Explore in 3D

1EZI \| pdb_00001ezi	Download File View File

Structure of a sialic acid activating synthetase, CMP acylneuraminate synthetase in the presence and absence of CDP

Mosimann, S.C., Gilbert, M., Dombrowski, D., Wakarchuk, W., Strynadka, N.C.

(2001) J Biological Chem 276: 8190-8196

Released	2001-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Neisseria meningitidis
Macromolecule	CMP-N-ACETYLNEURAMINIC ACID SYNTHETASE (protein)

Explore in 3D

1F00 \| pdb_00001f00	Download File View File

CRYSTAL STRUCTURE OF C-TERMINAL 282-RESIDUE FRAGMENT OF ENTEROPATHOGENIC E. COLI INTIMIN

Luo, Y., Frey, E.A., Pfuetzner, R.A., Creagh, A.L., Knoechel, D.G., Haynes, C.A., Finlay, B.B., Strynadka, N.C.J.

(2000) Nature 405: 1073-1077

Released	2000-07-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	INTIMIN (protein)

Explore in 3D

1F02 \| pdb_00001f02	Download File View File

CRYSTAL STRUCTURE OF C-TERMINAL 282-RESIDUE FRAGMENT OF INTIMIN IN COMPLEX WITH TRANSLOCATED INTIMIN RECEPTOR (TIR) INTIMIN-BINDING DOMAIN

Luo, Y., Frey, E.A., Pfuetzner, R.A., Creagh, A.L., Knoechel, D.G., Haynes, C.A., Finlay, B.B., Strynadka, N.C.J.

(2000) Nature 405: 1073-1077

Released	2000-07-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	INTIMIN (protein) TRANSLOCATED INTIMIN RECEPTOR (protein)

Explore in 3D

1F6D \| pdb_00001f6d	Download File View File

THE STRUCTURE OF UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE FROM E. COLI.

Campbell, R.E., Mosimann, S.C., Tanner, M.E., Strynadka, N.C.J.

(2000) Biochemistry 39: 14993-15001

Released	2000-12-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE (protein)
Unique Ligands	CL, NA, UDP

Explore in 3D

1FOF \| pdb_00001fof	Download File View File

CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-10

Paetzel, M., Danel, F., de Castro, L., Mosimann, S.C., Page, M.G.P., Strynadka, N.C.J.

(2000) Nat Struct Biol 7: 918-925

Released	2000-10-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA LACTAMASE OXA-10 (protein)
Unique Ligands	CO, SO4

Explore in 3D

1FQG \| pdb_00001fqg	Download File View File

MOLECULAR STRUCTURE OF THE ACYL-ENZYME INTERMEDIATE IN TEM-1 BETA-LACTAMASE

Strynadka, N.C.

(1992) Nature 359: 700-705

Released	2000-11-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	TEM-1 BETA-LACTAMASE (protein)
Unique Ligands	PNM

Explore in 3D

1G68 \| pdb_00001g68	Download File View File

PSE-4 CARBENICILLINASE, WILD TYPE

Lim, D., Sanschagrin, F., Passmore, L., De Castro, L., Levesque, R.C., Strynadka, N.C.J.

(2001) Biochemistry 40: 395-402

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE PSE-4 (protein)
Unique Ligands	SO4

Explore in 3D

1G6A \| pdb_00001g6a	Download File View File

PSE-4 CARBENICILLINASE, R234K MUTANT

Lim, D., Sanschagrin, F., Passmore, L., De Castro, L., Levesque, R.C., Strynadka, N.C.J.

(2001) Biochemistry 40: 395-402

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE PSE-4 (protein)
Unique Ligands	SO4

Explore in 3D

1G9R \| pdb_00001g9r	Download File View File

CRYSTAL STRUCTURE OF GALACTOSYLTRANSFERASE LGTC IN COMPLEX WITH MN AND UDP-2F-GALACTOSE

Persson, K., Hoa, D.L., Diekelmann, M., Wakarchuk, W.W., Withers, S.G., Strynadka, N.C.J.

(2001) Nat Struct Biol 8: 166-175

Released	2001-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Neisseria meningitidis
Macromolecule	GLYCOSYL TRANSFERASE (protein)
Unique Ligands	ACY, MN, UPF

Explore in 3D

1GA8 \| pdb_00001ga8	Download File View File

CRYSTAL STRUCTURE OF GALACOSYLTRANSFERASE LGTC IN COMPLEX WITH DONOR AND ACCEPTOR SUGAR ANALOGS.

Persson, K., Ly, H.D., Diekelmann, M., Wakarchuk, W.W., Withers, S.G., Strynadka, N.C.J.

(2001) Nat Struct Biol 8: 166-175

Released	2001-02-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Neisseria meningitidis
Macromolecule	GALACTOSYL TRANSFERASE LGTC (protein)
Unique Ligands	MN, UPF
Unique branched monosaccharides	BGC, Z9D

Explore in 3D

1JDI \| pdb_00001jdi	Download File View File

CRYSTAL STRUCTURE OF L-RIBULOSE-5-PHOSPHATE 4-EPIMERASE

Luo, Y., Samuel, J., Mosimann, S.C., Lee, J.E., Tanner, M.E., Strynadka, N.C.J.

(2001) Biochemistry 40: 14763-14771

Released	2002-01-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli K-12
Macromolecule	L-RIBULOSE 5 PHOSPHATE 4-EPIMERASE (protein)
Unique Ligands	ZN

Explore in 3D

1JHC \| pdb_00001jhc	Download File View File

LEXA S119A C-TERMINAL TRYPTIC FRAGMENT

Luo, Y., Pfuetzner, R.A., Mosimann, S., Little, J.W., Strynadka, N.C.J.

(2001) Cell 106: 585-594

Released	2001-09-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	LEXA REPRESSOR (protein)

Explore in 3D

1JHE \| pdb_00001jhe	Download File View File

LEXA L89P Q92W E152A K156A MUTANT

Luo, Y., Pfuetzner, R.A., Mosimann, S., Little, J.W., J Strynadka, N.C.

(2001) Cell 106: 585-594

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	LEXA REPRESSOR (protein)

Explore in 3D

1JHF \| pdb_00001jhf	Download File View File

LEXA G85D MUTANT

Luo, Y., Pfuetzner, R.A., Mosimann, S., Little, J.W., Strynadka, N.C.J.

(2001) Cell 106: 585-594

Released	2001-09-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	LEXA REPRESSOR (protein)
Unique Ligands	SO4

Explore in 3D

1JHH \| pdb_00001jhh	Download File View File

LEXA S119A MUTANT

Luo, Y., Pfuetzner, R.A., Mosimann, S., Little, J.W., Strynadka, N.C.J.

(2001) Cell 106: 585-594

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	LEXA REPRESSOR (protein)
Unique Ligands	SO4

Explore in 3D

1JTD \| pdb_00001jtd	Download File View File

Crystal structure of beta-lactamase inhibitor protein-II in complex with TEM-1 beta-lactamase

Lim, D.C., Park, H.U., De Castro, L., Kang, S.G., Lee, H.S., Jensen, S., Lee, K.J., Strynadka, N.C.J.

(2001) Nat Struct Biol 8: 848-852

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Streptomyces exfoliatus
Macromolecule	TEM-1 beta-lactamase (protein) beta-lactamase inhibitor protein II (protein)
Unique Ligands	CA

1 to 25 of 208 Structures

Page 1 of 9

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AVS | pdb_00001avs

1B12 | pdb_00001b12

1DLI | pdb_00001dli

1DLJ | pdb_00001dlj

1EAI | pdb_00001eai

1ERM | pdb_00001erm

1ERO | pdb_00001ero

1ERQ | pdb_00001erq

1EYR | pdb_00001eyr

1EZI | pdb_00001ezi

1F00 | pdb_00001f00

1F02 | pdb_00001f02

1F6D | pdb_00001f6d

1FOF | pdb_00001fof

1FQG | pdb_00001fqg

1G68 | pdb_00001g68

1G6A | pdb_00001g6a

1G9R | pdb_00001g9r

1GA8 | pdb_00001ga8

1JDI | pdb_00001jdi

1JHC | pdb_00001jhc

1JHE | pdb_00001jhe

1JHF | pdb_00001jhf

1JHH | pdb_00001jhh

1JTD | pdb_00001jtd